Composition and process for preparing vaccine

ABSTRACT

The disclosure relates to polypeptides, polynucleic acids and pharmaceutical compositions comprising polypeptides that find use in the prevention or treatment of cancer. The disclosure also relates to methods of inducing a cytotoxic T cell response in a subject or treating cancer by administering pharmaceutical compositions comprising the peptides, and companion diagnostic methods. The disclosure also relates to a method of preparing a peptide or polynucleic acid for use in a method of inducing a T cell response against a target polypeptide, wherein the method comprises identifying epitopes in the antigen that bind to multiple HLA alleles of the highest proportion of subjects in a target population.

CROSS-REFERENCE

This application claims the benefit of GB Application No. 1814362.8 filed on Sep. 4, 2018, which application is incorporated herein by reference in its entirety.

SEQUENCE LISTING

The instant application contains a Sequence Listing which has been submitted electronically in ASCII format and is hereby incorporated by reference in its entirety. Said ASCII copy, created on Aug. 29, 2019, is named 52895706201_SL.txt and is 1,449,508 bytes in size.

FIELD

The disclosure relates to peptides and compositions that find use in vaccines and immunotherapy, to nucleic acids and vectors that encode such peptides, to methods of designing and producing such peptides, to methods of predicting whether an individual subject will respond to treatment with such peptides, to subject-specific compositions comprising such peptides, and to methods of treatment using such peptides.

BACKGROUND

For decades, scientists have assumed that chronic diseases were beyond the reach of a person's natural defences. Recently, however, significant tumor regressions observed in individuals treated with antibodies that block immune inhibitory molecules have accelerated the field of cancer immunotherapy. These clinical findings demonstrate that re-activation of existing T cell responses results in meaningful clinical benefit for individuals. These advances have renewed enthusiasm for developing cancer vaccines that induce tumor specific T cell responses.

Despite the promise, current immunotherapy is effective only in a fraction of individuals. In addition, most cancer vaccine trials have failed to demonstrate statistically significant efficacy because of a low rate of tumor regression and antitumor T cell responses in individuals. Similar failures were reported with therapeutic and preventive vaccines that sought to include T cell responses in the fields of HIV and allergy. There is a need to overcome the clinical failures of immunotherapies and vaccines.

SUMMARY

In antigen presenting cells (APC) protein antigens are processed into peptides. These peptides bind to HLA molecules and are presented on the cell surface as peptide-HLA complexes to T cells. Different individuals express different HLA molecules, and different HLA molecules present different peptides. The inventors have demonstrated that an epitope that binds to a single HLA class I allele expressed in a subject is essential, but not sufficient to induce tumor specific T cell responses. Instead tumour specific T cell responses are optimally activated when an epitope is recognised and presented by the HLA molecules encoded by at least three HLA class I genes of an individual (PCT/EP2018/055231, PCT/EP2018/055232, PCT/EP2018/055230, EP 3370065 and EP 3369431).

Based on this discovery the inventors have developed a method for designing and preparing peptides to induce T cell responses in the highest proportion of subjects in a given target human population and have used this method to design a set of peptides for use in treating cancer.

Accordingly, in a first aspect the disclosure provides a peptide of up to 50 amino acids in length and comprising the amino acid sequence of any of SEQ ID NOs: 1 to 2786 and/or 5432-5931.

In a further aspect, the disclosure provides a polynucleic acid or a vector that encodes a peptide of up to 50 amino acids in length and comprising the amino acid sequence of any of SEQ ID NOs: 1 to 2786 and/or 5432-5931.

In a further aspect, the disclosure provides a panel of two or more of the peptides or two or more of the polynucleic acids or vectors, wherein each peptide comprises, or each polynucleic acid or vector encodes a peptide that comprises, a different amino acid sequence selected from SEQ ID NOs: 1 to 2786 and/or 5432-5931.

In a further aspect, the disclosure provides a pharmaceutical composition or kit, comprising one or more of the peptides, polynucleic acids, vectors or panels, wherein the composition or kit optionally comprise at least one pharmaceutically acceptable diluent, carrier, or preservative.

In a further aspect, the disclosure provides a method of predicting that a specific human subject will have a cytotoxic T cell response and/or a helper T cell response to administration of the pharmaceutical composition or the peptides, polynucleic acids or vectors of the kit, the method comprising

-   -   (i) a. determining that the one or more peptides, or encoded         peptides, of the pharmaceutical composition or kit, comprise at         least one amino acid sequence that is a T cell epitope capable         of binding to at least three HLA class I molecules of the         subject; and         -   b. predicting that the subject will have a cytotoxic T cell             response to administration of the pharmaceutical             composition; or     -   (ii) a. determining that the one or more peptides, or encoded         peptides, of the pharmaceutical composition or kit comprise at         least one amino acid sequence that is a T cell epitope capable         of binding to at least three HLA class II molecules of the         subject; and         -   b. predicting that the subject will have a helper T cell             response to administration of the pharmaceutical             composition.

In a further aspect, the disclosure provides a method of vaccination, providing immunotherapy or inducing a cytotoxic T cell response in a subject, the method comprising administering to the subject the pharmaceutical composition or the peptides, polynucleic acids or vectors of the kit.

In further aspects, the disclosure provides

-   -   the pharmaceutical composition or the peptides, polynucleic         acids or vectors of the kit described above for use in a method         of vaccination, providing immunotherapy or inducing a cytotoxic         T cell response in a subject; and     -   use of the peptides or polynucleic acids as described above in         the manufacture of a medicament for vaccination, providing         immunotherapy or inducing a cytotoxic T cell response in a         subject.

In a further aspect, the disclosure provides a method of preparing a pharmaceutical composition or kit for use in a method of treating cancer is a specific human subject, the method comprising

-   -   a. selecting two or more peptides, or one or more polynucleic         acids or vectors according that encode at least two peptides,         wherein each peptide, or encoded peptide, comprises an amino         acid sequence selected from SEQ ID NOs: 1 to 2786 and/or         5432-5931 that comprises a T cell epitope capable of binding to         at least three HLA class I alleles and/or a T cell epitope         capable of binding to at least three HLA class II alleles of the         specific human subject; and     -   b. preparing a pharmaceutical composition or kit comprising the         two or more peptides, or one or more polynucleic acids or         vectors selected in step a.

In a further aspect, the disclosure provides a method of designing, or preparing a peptide, or a polynucleic acid or vector that encodes a peptide, or a panel of peptides, or one or more polynucleic acid or vectors that encode a panel of peptides, for use in a method of inducing a T cell response against a target polypeptide, the method comprising

-   -   (i) selecting or defining a model human population comprising a         plurality of subjects each defined by HLA class I genotype         and/or by HLA class II genotype;     -   (ii) identifying for each subject of the model population:         -   (a) amino acid sequences of the target polypeptide that are             a T cell epitope capable of binding to at least three HLA             class I molecules of the subject;         -   (b) amino acid sequences of the target polypeptide that are             a T cell epitope capable of binding to at least three HLA             class II molecules of the subject;         -   (c) amino acid sequences of the target polypeptide that             comprise a T cell epitope capable of binding to at least             three HLA class I molecules of the subject and a T cell             epitope capable of binding to at least three HLA class II             molecules of the subject; or         -   (d) amino acid sequences of the target polypeptide that both             -   i. are a T cell epitope capable of binding to at least                 three HLA class II molecules; and             -   ii. comprise an amino acid sequence that is a T cell                 epitope capable of binding to at least three HLA class I                 molecules of the subject;     -   (iii) selecting a polypeptide fragment window length of between         9 and 50 amino acids;     -   (iv) identifying a fragment of the target polypeptide that         -   (a) has the length selected in step (iii); and         -   (b) comprises an amino acid sequence identified in any one             of step (ii) (a) to (d) in the highest proportion of             subjects in the model population;     -   (v) optionally testing the fragment identified in step (iv)         against additional pre-defined criteria, rejecting the fragment         if the further pre-defined criteria are not met, and repeating         step (iv) to identify an alternative fragment of the target         polypeptide that         -   (a) has the length selected in step (iii); and         -   (b) comprises an amino acid sequence identified in step (iv)             in the next highest proportion of subjects in the model             population;     -   (vi) optionally repeating step (iv) and further optionally         step (v) in one or more further rounds, wherein a further         fragment of the target polypeptide is identified in each round,         and wherein in each round subjects are excluded from the model         population if any of the fragments selected in step (iv) and not         rejected in step (v) of any of the preceding rounds comprises an         amino acid sequence identified in step (ii) for that subject;         and     -   (vii) designing or preparing a peptide, a polynucleic acid or         vector that encodes a peptide, a panel of peptides, or one or         more polynucleic acids or vectors that encode a panel of         peptides, wherein each peptide comprises one or more of the         target polypeptide fragments identified in step (iv), (v) or         (vi), optionally wherein the polypeptide fragment is flanked at         the N and/or C terminus by additional amino acids that are not         part of the sequence of the target polypeptide antigen.

In a further aspect, the disclosure provides a panel peptides, polynucleic acids or vectors designed and/or prepared according to the method, or comprising or encoding two or more peptides designed and/or prepared according to the method.

In a further aspect, the disclosure provides a panel of peptides, or one or more polynucleic acids or vectors encoding a panel of peptides, for use in a method of inducing a T cell response against one or more target polypeptides in a subject of a target human population, wherein each of the peptides, or encoded peptides, comprises an amino acid sequence that is

-   -   (a) 9 to 50 amino acids in length; and     -   (b) comprises a fragment of the one or more target polypeptides,         wherein the fragment comprises, in at least 10% of subjects of         the intent-to-treat human population:         -   a. an amino acid sequence of the target polypeptide that is             a T cell epitope capable of binding to at least three HLA             class I molecules of the subject;         -   b. an amino acid sequence of the target polypeptide that is             a T cell epitope capable of binding to at least three HLA             class II molecules of the subject;         -   c. an amino acid sequence of the target polypeptide that             comprise a T cell epitope capable of binding to at least             three HLA class I molecules of the subject and a T cell             epitope capable of binding to at least three HLA class II             molecules of the subject; or         -   d. an amino acid sequence of the target polypeptide that             both             -   i. is a T cell epitope capable of binding to at least                 three HLA class II molecules; and             -   ii. comprise an amino acid sequence that is a T cell                 epitope capable of binding to at least three HLA class I                 molecules of the subject.

In a further aspect, the disclosure provides a pharmaceutical composition or kit comprising the panel of peptides, or one or more polynucleic acids or vectors encoding the panel of peptides, wherein the composition or kit optionally comprises at least one pharmaceutically acceptable diluent, carrier, or preservative.

In a further aspect, the disclosure provides a method of vaccination, providing immunotherapy or inducing a cytotoxic T cell response in a subject, the method comprising administering to the subject a pharmaceutical composition or the panel of peptides, polynucleic acids or vectors of the kit.

The disclosure will now be described in more detail, by way of example and not limitation, and by reference to the accompanying drawings. Many equivalent modifications and variations will be apparent, to those skilled in the art when given this disclosure. Accordingly, the exemplary embodiments of the disclosure set forth are considered to be illustrative and not limiting. Various changes to the described embodiments may be made without departing from the scope of the disclosure. All documents cited herein, whether supra or infra, are expressly incorporated by reference in their entirety.

The present disclosure includes the combination of the aspects and preferred features described except where such a combination is clearly impermissible or is stated to be expressly avoided. As used in this specification and the appended claims, the singular forms “a”, “an”, and “the” include plural referents unless the content clearly dictates otherwise. Thus, for example, reference to “a peptide” includes two or more such peptides.

Section headings are used herein for convenience only and are not to be construed as limiting in any way.

DESCRIPTION OF THE FIGURES

FIG. 1

ROC curve of HLA restricted PEPI biomarkers.

FIG. 2

ROC curve of ≥1 PEPI3+ Test for the determination of the diagnostic accuracy. AUC=0.73 classifies a fair diagnostic value for the PEPI biomarker.

FIGS. 3A-B

Distribution of HLA class I PEPI3+ compared to CD8+ T cell responses measured by a state of art assay among peptide pools used in the CD8+ T cell response assays. FIG. 3A: HLA class I restricted PEPI3+s. The 90% Overall Percent of Agreement (OPA) among the T cell responses and PEPI3+ peptides demonstrate the utility of the invented peptides for prediction of vaccine induced T cell response set of individuals (p<0.001). FIG. 3B: Class I HLA restricted epitopes (PEPI1+). The OPA between predicted epitopes and CD8+ T cell responses was 25% (not statistically significant). True positive (TP), both peptide and T cell responses were detected (shaded); True negative (TN): neither peptides nor T cell responses were detected (shaded); False negative (FN), only T cell responses were detected; False positive (FP), only peptide were detected.

FIGS. 4A-B

Correlation between PEPI Test predicted CD4 peptides and T-cell reactivity measured with peptide pools in patients treated with SLP vaccine. FIG. 4A: HLA class II allele-binding PEPIs; FIG. 4B: single HLA class II allele-binding epitopes. Gray: true positive (TP) and true negative (TN) responses; White: false negative (FN) and false positive (FP) responses. TP: both peptide and T cell responses were detected; TN: neither peptides nor T cell responses were detected; FN: only T cell responses were detected; FP: only peptides were detected.

FIGS. 5A-D

Multiple HLA binding peptides that define the HPV-16 LPV vaccine specific T cell response set of 20 VIN-3 and 5 cervical cancer patients. PEPI counts were compared to clinical responses after treatment with LPV. Predicted CD8+ T cell responders according to HLA class I PEPIs (FIG. 5A) and CD4+ T cell responders according to HLA class II PEPIs (FIG. 5B). Correlation between HLA class I (FIG. 5C) and class II (FIG. 5D) PEPI count and clinical response at 3 months follow-up in VIN-3 patients. Predicted T cell responders: PEPI count ≥1. Gray column, patient with HPV16 E6- and/or E7-specific T cell response; Dashed column, patient without T cell responses. CR, complete clinical responder; PR, partial clinical responder; NR, clinical non-responder.

FIGS. 6A-C

The multiple HLA class I binding peptides that define the HPV vaccine specific T cell response set of 2 patients. FIG. 6A: Four HPV antigens in the HPV vaccine. Boxes represent the length of the amino acid sequences from the N terminus to the C terminus. FIG. 6B: Process to identify the multiple HLA binding peptides of two patients: HLA sequences of the patients labelled as 4-digit HLA genotype right from the patient's ID. The location of the 1^(st) amino acid of the 54 and 91 epitopes that can bind to the patient 12-11 and patient 14-5 HLAs (PEPI1+) respectively are depicted with lines. PEPI2 represents the peptides selected from PEPI1+s that can bind to multiple HLAs of a patient (PEPI2+). PEPI3 represent peptides that can bind to HLAs of a patient (PEPI3+). PEPI4 represent peptides that can bind to HLAs of a patient (PEPI4+). PEPI5 represent peptides that can bind to HLAs of a patient (PEPI5+). PEPI6 represent peptides that can bind to 6 HLAs of a patient (PEPI6). FIG. 6C: The DNA vaccine specific PEPI3+ set of two patients characterizes their vaccine specific T cell responses.

FIG. 7

TSA expression probability targeted by IMA901 vaccine.

FIGS. 8A-B

HLA Class I allele binding properties of TUMAPs of IMA901 peptide vaccine for 2,915 common alleles. (FIG. 8A) and for the Class I genotype (6 alleles) of 51 HLA-A*02+ RCC patients. Percentages at the bottom indicate the proportion of HLAs the TUMAPs can bind to. Lines in darker grey indicate binding HLA alleles. (FIG. 8B) Probability indicates the proportion of patients who can present the indicated number of TUMAPs with their three or more HLAs. AP indicates number of antigens which can generate at least one PEPI. In this case, since both the antigens and the predicted PEPIs are 9mers (SEQ ID NOS 5958-5966, respectively, in order of appearance), AP=TUMAP=PEPI.

FIG. 9

Correlation between immune response measured for any TUMAP and immune response against expressed antigen on the tumor (AGP).

FIGS. 10A-G

Correlation study between immune response rates (IRR) and PEPI Score, between objective response rates (ORR) and MultiPEPI Scores and between objective response rates (ORR) and MultiAg PEPI Scores. FIG. 10A: Preliminary experiment to explore the relationship between PEPI Score and immune response rate of therapeutic vaccines (r²=0.7, p=0.001). FIG. 10B: IRR-PEPI Score plot. (r²=0.47, p=0.001). FIG. 10C: MultiPEPI Score and clinical response rate of therapeutic vaccines (r²=0.75, p=0.001). FIG. 10D: ORRs plotted against the MultiPEPI Score (r²=0.12, p=0.124). FIG. 10E: ORRs plotted against the MultiAg PEPI Score for vaccines with multiple antigens (r²=0.64; p=0.009). F: ORRs plotted against the MultiPEPI Score for vaccines with multiple antigens (r²=0.87; p=0.0002). FIG. 10G: ORRs plotted against the MultiPEPI Score in patients with target antigen positive disease (r²=0.56 and p=0.005). Dark grey dashed lines indicate the 95% confidence interval; light grey dashed line indicates the trendline.

FIG. 11

OBERTO trial design (NCT03391232)

FIGS. 12A-D

Antigen expression in CRC cohort of OBERTO trial (n=10). FIG. 12A: Expression frequencies of PolyPEPI1018 source antigens determined based on 2391 biopsies. FIG. 12B: PolyPEPI1018 vaccine design specified as 3 out of 7 TSAs are expressed in CRC tumors with above 95% probability. FIG. 12C: In average, 4 out of the 10 patients had pre-existing immune responses against each target antigens, referring to the real expression of the TSAs in the tumors of the patients. FIG. 12D: 7 out of the 10 patients had pre-existing immune responses against minimum of 1 TSA, in average against 3 different TSAs.

FIG. 13

Immunogenicity of PolyPEPI1018 in CRC patients confirms proper target antigen and target peptide selection. Upper part: target peptide selection and peptide design of PolyPEPI1018 vaccine composition (SEQ ID NO: 5967). Two 15mers from CRC specific CTA (TSA) selected to contain 9mer PEPI3+ predominant in representative Model population. Table: PolyPEPI1018 vaccine has been retrospectively tested during a preclinical study in a CRC cohort and was proven to be immunogenic in all tested individuals for at least one antigen by generating PEPI3+s. Clinical immune responses were measured specific for at least one antigen in 90% of patients, and multi-antigen immune responses were also found in 90% of patients against at least 2, and in 80% of patients against at least 3 antigens as tested with IFNy fluorospot assay specifically measured for the vaccine-comprising peptides.

FIGS. 14A-C

Clinical response for PolyPEPI1018 treatment. FIG. 14A: Swimmer plot of clinical responses of OBERTO trial (NCT03391232). FIG. 14B: Association progression free survival (PFS) and AGP count. FIG. 14C: Association tumour volume and AGP count.

FIG. 15

Illustration of hotspot analysis. Analysis identifies hotspots in sample of 7 patients (Pat1-Pat7) in a peptide of amino acid sequence PIVQNIQGQMVHQAISPRTLNAWVKVVEEK (SEQ ID NO: 5932). Crosses indicate position of a T cell epitope (9 mer) capable of binding to at least three HLA class I alleles (HLA class I-binding PEPI3+). Light shade indicates a T cell epitope (15 mer) capable of binding to at least four HLA class II alleles (HLA class II-binding PEPI4+). Dark shade indicates HLA class II-binding PEPI4+ with an embedded HLA class I-binding PEPI3+. The 20 mer containing a HLA class I-binding PEPI3+ in the maximum number of the 7 patients is indicated. The 20 mer containing HLA class II-binding PEPI4+ with an embedded HLA class I-binding PEPI3+ in the maximum number of the 7 patients is indicated as 1^(st) Hotspot 20 mer. This 1^(st) Hotspot might be selected in a first cycle of a method of the present disclosure. In a second cycle, Pat1, Pat2 and Pat4 may be disregarded and the indicated second Hotspot selected.

FIG. 16

Distribution of hotspot amino acid sequence selection after 30 cycles. Selection of fewer than 30 peptides indicates that no more sequences meeting the HLA-binding criteria (20 mer containing HLA class II-binding PEPI4+ with an embedded HLA class I-binding PEPI3+) could be identified in the model population.

FIG. 17

Process for Personalized Vaccination. Process consists of saliva sample collection and tumor sample collection for tumor pathology. Based on the determined HLA genotype of the patient and tumor type of the patient, 12 tumor and patient specific peptides are selected and personalized vaccine comprising the selected 12 peptides is prepared. Vaccine will be then administered to the patient by the oncologist.

FIG. 18

Feasibility study for a “simulated” Breast Cancer Clinical trial. This example demonstrates that >80% of patients could be treated with “patient-specific” vaccine selected from a “Warehouse” of 100 different peptides.

FIGS. 19A-B

Probability of vaccine antigen expression in the Patient-A's tumor cells. There is over 95% probability that 5 out of the 13 target antigens in the vaccine regimen is expressed in the patient's tumor. Consequently, the 13 peptide vaccines together can induce immune responses against at least 5 ovarian cancer antigens with 95% probability ((AGP95) FIG. 19B). It has 84% probability that each peptide will induce immune responses in the Patient-A. AGP50 (FIG. 19A) is the mean (expected value)=7.9 (it is a measure of the effectiveness of the vaccine in attacking the tumor of Patient-A).

FIG. 20

Treatment schedule of Patient-A.

FIG. 21

T cell responses of patient-A. A. Left: Vaccine peptide-specific T cell responses (20-mers). right: CD8+ cytotoxic T cell responses (9-mers). Predicted T cell responses are confirmed by bioassay.

FIG. 22

MRI findings of Patient-A treated with personalised (PIT) vaccine. This late stage, heavily pretreated ovarian cancer patient had an unexpected objective response after the PIT vaccine treatment. These MRI findings suggest that PIT vaccine in combination with chemotherapy significantly reduced her tumor burden. not appear on normal cells of the tissue in which the tumor developed.

FIGS. 23A-C

Probability of vaccine antigen expression in the Patient-B's tumor cells and treatment schedule of Patient-B. FIG. 23A: There is over 95% probability that 4 out of the 13 target antigens in the vaccine is expressed in the patient's tumor. FIG. 23B: Consequently, the 12 peptide vaccines together can induce immune responses against at least 4 breast cancer antigens with 95% probability (AGP95). It has 84% probability that each peptide will induce immune responses in the Patient-B. AGP50=6.45; it is a measure of the effectiveness of the vaccine in attacking the tumor of Patient-B. FIG. 23C: Treatment schedule of Patient-B.

FIG. 24

T cell responses of Patient-A. Left: Vaccine peptide-specific T cell responses (20-mers) of P. Right: Kinetic of vaccine-specific CD8+ cytotoxic T cell responses (9-mers). Predicted T cell responses are confirmed by bioassay.

FIG. 25

Treatment schedule of Patient-C.

FIGS. 26A-D

T cell responses of Patient-C. FIG. 26A: Vaccine peptide-specific T cell responses (20-mers). FIG. 26B: Vaccine peptide-specific CD8+ T cell responses (9-mers). FIGS. 26C-D: Kinetics of vaccine-specific CD4+ T cells and CD8+ cytotoxic T cell responses (9-mers), respectively. Long lasting immune responses both CD4 and CD 8 T cell specific are present after 14 months.

FIG. 27

Treatment schedule of Patient-D.

FIGS. 28A-B

Immune responses of Patient-D for PIT treatment. FIG. 28A: CD4+ specific T cell responses (20mer) and FIG. 28B: CD8+ T cell specific T cell responses (9mer). 0.5-4 months refer to the timespan following the last vaccination until PBMC sample collection.

DESCRIPTION OF THE SEQUENCES

SEQ ID NOs: 1 to 2786 set forth the “hotspot” sequences from cancer antigens described in Table 25A.

SEQ ID NOs: 2787 to 5431 set forth the “hotspot” sequences from cancer antigens described in Table 28.

SEQ ID NOs: 5432 to 5931 set forth the “hotspot” sequences from cancer antigens described in Table 25B.

SEQ ID NO: 5932 sets forth the amino acid sequence shown in FIG. 15.

SEQ ID NOs: 5933 to 5945 set forth sequences of personalized vaccine of Patient-A and are described in Table 31.

SEQ ID NOs: 5946 to 5957 set forth sequences of personalized vaccine of Patient-B and are described in Table 33.

SEQ ID NOs: 5958-5966 set forth the 9mer sequences shown in FIG. 8.

SEQ ID NO: 5967 sets forth the PolyPEPI1018 vaccine peptide shown in FIG. 13.

DETAILED DESCRIPTION HLA Genotypes

HLAs are encoded by the most polymorphic genes of the human genome. Each person has a maternal and a paternal allele for the three HLA class I molecules (HLA-A*, HLA-B*, HLA-C*) and four HLA class II molecules (HLA-DP*, HLA-DQ*, HLA-DRB1*, HLA-DRB3*/4*/5*). Practically, each person expresses a different combination of 6 HLA class I and 8 HLA class II molecules that present different epitopes from the same protein antigen.

The nomenclature used to designate the amino acid sequence of the HLA molecule is as follows: gene name*allele:protein number, which, for instance, can look like: HLA-A*02:25. In this example, “02” refers to the allele. In most instances, alleles are defined by serotypes—meaning that the proteins of a given allele will not react with each other in serological assays. Protein numbers (“25” in the example above) are assigned consecutively as the protein is discovered. A new protein number is assigned for any protein with a different amino acid sequence (e.g. even a one amino acid change in sequence is considered a different protein number). Further information on the nucleic acid sequence of a given locus may be appended to the HLA nomenclature, but such information is not required for the methods described herein.

The HLA class I genotype or HLA class II genotype of an individual may refer to the actual amino acid sequence of each class I or class II HLA of an individual, or may refer to the nomenclature, as described above, that designates, minimally, the allele and protein number of each HLA gene. In some embodiments, the HLA genotype of an individual is obtained or determined by assaying a biological sample from the individual. The biological sample typically contains subject DNA. The biological sample may be, for example, a blood, serum, plasma, saliva, urine, expiration, cell or tissue sample. In some embodiments the biological sample is a saliva sample. In some embodiments the biological sample is a buccal swab sample. An HLA genotype may be obtained or determined using any suitable method. For example, the sequence may be determined via sequencing the HLA gene loci using methods and protocols known in the art. In some embodiments, the HLA genotype is determined using sequence specific primer (SSP) technologies. In some embodiments, the HLA genotype is determined using sequence specific oligonucleotide (SSO) technologies. In some embodiments, the HLA genotype is determined using sequence based typing (SBT) technologies. In some embodiments, the HLA genotype is determined using next generation sequencing. Alternatively, the HLA set of an individual may be stored in a database and accessed using methods known in the art.

HLA-Epitope Binding

A given HLA of a subject will only present to T cells a limited number of different peptides produced by the processing of protein antigens in an APC. As used herein, “display” or “present”, when used in relation to HLA, references the binding between a peptide (epitope) and an HLA. In this regard, to “display” or “present” a peptide is synonymous with “binding” a peptide.

As used herein, the term “epitope” or “T cell epitope” refers to a sequence of contiguous amino acids contained within a protein antigen that possesses a binding affinity for (is capable of binding to) one or more HLAs. An epitope is HLA- and antigen-specific (HLA-epitope pairs, predicted with known methods), but not subject specific.

The term “personal epitope”, or “PEPI” as used herein distinguishes a subject-specific epitope from an HLA specific epitope. A “PEPI” is a fragment of a polypeptide consisting of a sequence of contiguous amino acids of the polypeptide that is a T cell epitope capable of binding to one or more HLA class I molecules of a specific human subject. In other words a “PEPI” is a T cell epitope that is recognised by the HLA class I set of a specific individual. In contrast to an “epitope”, PEPIs are specific to an individual because different individuals have different HLA molecules which each bind to different T cell epitopes. In appropriate cases a “PEPI” may also refer to a fragment of a polypeptide consisting of a sequence of contiguous amino acids of the polypeptide that is a T cell epitope capable of binding to one or more HLA class II molecules of a specific human subject.

“PEPI1” as used herein refers to a peptide, or a fragment of a polypeptide, that can bind to one HLA class I molecule (or, in specific contexts, HLA class II molecule) of an individual. “PEPI1+” refers to a peptide, or a fragment of a polypeptide, that can bind to one or more HLA class I molecule of an individual.

“PEPI2” refers to a peptide, or a fragment of a polypeptide, that can bind to two HLA class I (or II) molecules of an individual. “PEPI2+” refers to a peptide, or a fragment of a polypeptide, that can bind to two or more HLA class I (or II) molecules of an individual, i.e. a fragment identified according to a method disclosed herein.

“PEPI3” refers to a peptide, or a fragment of a polypeptide, that can bind to three HLA class I (or II) molecules of an individual. “PEPI3+” refers to a peptide, or a fragment of a polypeptide, that can bind to three or more HLA class I (or II) molecules of an individual.

“PEPI4” refers to a peptide, or a fragment of a polypeptide, that can bind to four HLA class I (or II) molecules of an individual. “PEPI4+” refers to a peptide, or a fragment of a polypeptide, that can bind to four or more HLA class I (or II) molecules of an individual.

“PEPI5” refers to a peptide, or a fragment of a polypeptide, that can bind to five HLA class I (or II) molecules of an individual. “PEPI5+” refers to a peptide, or a fragment of a polypeptide, that can bind to five or more HLA class I (or II) molecules of an individual.

“PEPI6” refers to a peptide, or a fragment of a polypeptide, that can bind to all six HLA class I (or six HLA class II) molecules of an individual.

Generally speaking, epitopes presented by HLA class I molecules are about nine amino acids long. For the purposes of this disclosure, however, an epitope may be more or less than nine amino acids long, as long as the epitope is capable of binding HLA. For example, an epitope that is capable of being presented by (binding to) one or more HLA class I molecules may be between 7, or 8 or 9 and 9 or 10 or 11 amino acids long.

Table 1. Example Software for Determining Epitope-HLA Binding

Using techniques known in the art, it is possible to determine the epitopes that will bind to a known HLA. Any suitable method may be used, provided that the same method is used to determine multiple HLA-epitope binding pairs that are directly compared. For example, biochemical analysis may be used. It is also possible to use lists of epitopes known to be bound by a given HLA. It is also possible to use predictive or modelling software to determine which epitopes may be bound by a given HLA. Examples are provided in Table 1. In some cases a T cell epitope is capable of binding to a given HLA if it has an IC50 or predicted IC50 of less than 5000 nM, less than 2000 nM, less than 1000 nM, or less than 500 nM.

TABLE 1 Example software for determining epitope-HLA binding EPITOPE PREDICTION TOOLS WEB ADDRESS BIMAS, NIH www-bimas.cit.nih.gov/molbio/hla_bind/ PPAPROC, Tubingen Univ. MHCPred, Edward Jenner Inst. of Vaccine Res. EpiJen, Edward Jenner Inst. of http://www.ddg-pharmfac.net/epijen/EpiJen/EpiJen.htm Vaccine Res. NetMHC, Center for Biological http://www.cbs.dtu.dk/services/NetMHC/ Sequence Analysis SVMHC, Tubingen Univ. http://abi.inf.uni-tuebingen.de/Services/SVMHC/ SYFPEITHI, Biomedical http://www.syfpeithi.de/bin/MHCServer.d11/EpitopePrediction.htm Informatics, Heidelberg ETK EPITOOLKIT, Tubingen http://etk.informatik.uni-tuebingen.de/epipred/ Univ. PREDEP, Hebrew Univ. Jerusalem http://margalit.huji.ac.il/Teppred/mhc-bind/index.html RANKPEP, MIF Bioinformatics http://bio.dfci.harvard.edu/RANKPEP/ IEDB, Immune Epitope Database http://tools.immuneepitope.org/main/html/tcell_tools.html EPITOPE DATABASES WEB ADDRESS MHCBN, Institute of Microbial http://www.imtech.res.in/raghava/mhcbn/ Technology, Chandigarh, INDIA SYFPEITHI, Biomedical http://www.syfpeithi.de/ Informatics, Heidelberg AntiJen, Edward Jenner Inst. of http://www.ddg- Vaccine Res. pharmfac.net/antijen/AntiJen/antijenhomepage.htm EPIMHC database of MHC http://immunax.dfci.harvard.edu/epimhc/ ligands, MIF Bioinformatics IEDB, Immune Epitope Database http://www.iedb.org/

HLA molecules regulate T cell responses. Until recently, the triggering of an immune response to individual epitopes was thought to be determined by recognition of the epitope by the product of single HLA allele, i.e. HLA-restricted epitopes. However, HLA-restricted epitopes induce T cell responses in only a fraction of individuals. Peptides that activate a T cell response in one individual are inactive in others despite HLA allele matching. Therefore, it was previously unknown how an individual's HLA molecules present the antigen-derived epitopes that positively activate T cell responses.

The inventors discovered that multiple HLA expressed by an individual need to present the same peptide in order to trigger a T cell response. Therefore the fragments of a polypeptide antigen (epitopes) that are immunogenic for a specific individual (PEPIs) are those that can bind to multiple class I (activate cytotoxic T cells) or class II (activate helper T cells) HLAs expressed by that individual. This discovery is described in PCT/EP2018/055231, PCT/EP2018/055232, PCT/EP2018/055230, EP 3370065 and EP 3369431.

Peptides

In some aspects the disclosure provides a peptide that comprises the amino acid sequence of any one of SEQ ID NOs: 1 to 2786 as shown in Table 25A and/or SEQ ID NOs: 5432 to 5931 as show in Table 25B and/or SEQ ID NOs: 2787 to 5431 shown in Table 28. Each of SEQ ID NOs: 1 to 5931 is a 20-mer fragment of a TAA, wherein the fragment comprises at least one HLA class II-binding PEPI4+ and at least one HLA class I-binding PEPI3+ embedded in the HLA class II-binding PEPI4+ in subjects of a model population of ˜16,000 subjects.

The 20-mer fragments were identified as described herein to maximise the number of subjects in the model population that would mount T cell responses to a corresponding TAA in response to administration of at least one peptide comprising one of the 20-mers for each TAA. A panel of peptides each comprising a different one or more of the 20-mer fragments, or a suitable sub-selection thereof, therefore represents an ideal panel of peptides from which to select peptides for use in vaccinating against cancer or providing immunotherapy to treat cancer in individual human subjects.

In some cases the peptides or the panel peptides of the present disclosure may (each) comprise one or more of the sequences of SEQ ID NOs: 1 to 2786 and/or 2787 to 5431 and/or 5432 to 5931 that are fragments of polypeptide antigens associated with one or more specific cancers or types of cancer, such as those of Table 24, or any other described herein. Peptides may be selected from such a panel to treat a corresponding cancer. In some cases the polypeptide antigens may have a minimum expression rate in the cancer, such as being expressed in at least about 1%, 2%, 3%, 4%, 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95% of such cancers. In some cases the polypeptide antigens may be those that are most frequently expressed in the cancer, for example the 50, 45, 40, 35, 30, 25, 20, 15, 10, 9, 8, 7, 6, 5, 4, 3, 2 or 1 most commonly expressed antigens, for example as set out in Table 24.

In some cases the peptides or the panel peptides may (each) comprise peptides that comprise the sequences of SEQ ID NOs: 1 to 2786 and/or 2787 to 5431 and/or 5432 to 5931 that are fragments of a specific polypeptide antigen or family of polypeptide antigens, such as any described herein. Peptides may be selected from such a panel to treat a corresponding cancer that is associated with expression of the antigen.

In some cases the peptides or the panel peptides may (each) comprise peptides that comprise the sequences of SEQ ID NOs: 1 to 2786 and/or 2787 to 5431 and/or 5432 to 5931 that were identified by the inventors as described herein in the first 29, 28, 27, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, 15, 14, 13, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2 or 1 cycles of the method described herein. The peptides identified in earlier cycles are those that are able to induce T cell responses against the corresponding target antigen in the highest proportion of subjects in the model population.

In some cases the panel of peptides comprises peptides that together comprise any 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, 25, 30, 40 or 50, 100, 200, 300, 400 or 500 of the amino acid sequences of Table 25 or Table 28, or of the amino acid sequences of Table 25 or Table 28 that are a fragment of a TAA that is associated with a cancer selected from those listed in Table 24,and/or that were obtained in the first 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29 or 30 cycles as described herein.

In some cases the panel comprises or encodes at least two, or at least 3, 4, 5, 6, 7, 8, 9, 10, 11 or 12 amino acid sequence selected from SEQ ID NOs: 1 to 2786 and/or 2787 to 5431 and/or 5432 to 5931, each of which comprises a T cell epitope capable of binding to at least three HLA class I alleles and/or a T cell epitope capable of binding to at least three HLA class II alleles of an individual human subject. Such a panel is a personalised, subject-specific selection of peptides that can be used to induce T cell responses in the specific subject.

In some cases the peptides of the disclosure may be up to 50, 45, 40, 35, 34, 33, 32, 32, 31, 30, 29, 28, 27, 26, 25, 24, 23, 22, 21 or 20 amino acids in length. The peptide comprises or consists of an amino acid sequence selected from any of SEQ ID NO: 1 to 2786 and/or 2787 to 5431 and/or 5432 to 5931, which is a fragment of one or more TAAs as shown in Table 24. In some cases the fragment may comprise or consist of a longer fragment of a TAA of which the sequence of SEQ ID NO: 1 to 2786 and/or 2787 to 5431 and/or 5432 to 5931 is a part. The terms “fragment” or “fragment of a polypeptide” as used herein refer to a string of amino acids or an amino acid sequence typically of reduced length relative to the or a reference polypeptide and comprising, over the common portion, an amino acid sequence identical to the reference polypeptide. Such a fragment according to the disclosure may be, where appropriate, included in a larger polypeptide of which it is a constituent.

In some cases the fragment having the amino acid sequence of any one of SEQ ID NOs: 1 to 2786, or the longer fragment of a TAA comprising the amino acid sequence of any one of SEQ ID NOs: 1 to 2786, is flanked at the N and/or C terminus of the peptide by additional amino acids that are not part of the consecutive sequence of the TAA. In some cases the sequence may be flanked by up to 30 or 25 or 20 or 15 or 10, or 9 or 8 or 7 or 6 or 5 or 4 or 3 or 2 or 1 additional amino acid at the N and/or C terminus.

In some aspects the disclosure provides a polynucleic acid or vector that encodes one or more peptides, wherein the encoded peptides comprise the amino acid sequence of any one of SEQ ID NOs: 1 to 2786 and/or 2787 to 5431 and/or 5432 to 5931 and/or 2787 to 3997, as shown in Tables 25 and 28, or panels thereof. All of the disclosure herein relating to peptides comprising the amino acid sequence of any of SEQ ID NOs: 1 to 2786 and shown in Table 25 (and methods and compositions relating to such peptides) also applies equally to polynucleic acids or vectors encoding one of more peptides comprising the amino acid sequence of any of SEQ ID NOs: 1 to 2786 and/or 2787 to 5431 and/or 5432 to 5931 and/or 2787 to 3997.

Methods of Designing and Producing Peptides

In some embodiments the disclosure provides methods of designing and preparing one or more peptides, or polynucleotides or vectors that encode peptides, that can optimally be used to induce T cell responses against one or more given polypeptide antigens in a given target population of subjects.

Target Polypeptides

As used herein, the term “polypeptide” refers to a full-length protein, a portion of a protein, or a peptide characterized as a string of amino acids. As used herein, the term “peptide” refers to a short polypeptide. The peptides are typically between 9, or 10, or 11, or 12, or 13, or 14, or 15 or 16 or 17 or 18 or 19 or 20 and 20, or 21, or 22, or 23, or 24, or 25, or 26, or 27, or 28, or 29, or 30, or 35, or 40, or 45, or 50 amino acid in length. In some cases the peptide is not a 9-mer or a 15-mer. Short peptides may not be processed by antigen presenting cells and therefore bind exogenously to the HLA molecules. Thus, injected short peptides may bind in large numbers to the HLA molecules of all nucleated cells that have surface HLA class I, leading to tolerance. On the other hand polypeptides are not processed as efficiently as long peptides. Accordingly in some cases the peptides may be about 20 or 25 to about 30 or 35 amino acids in length.

The method may comprise the step of selecting one or more target polypeptide antigens. The target polypeptide antigen may be any polypeptide or fragment of a polypeptide against which it is desirable to mount a T cell response in a subject of the target population, for example a CD4+ T cell response or a CD8+ T cell response. Typically the target polypeptide is a polypeptide that is expressed by a pathogenic organism (for example, a bacteria or a parasite), a virus, a cancer cell or other disease-associated cell. In some cases the polypeptide may be present in a sample taken from a subject, such as a subject of the specific or target human population.

The polypeptide may be a Tumor Specific Antigen (TSA) and/or cancer- or tumor-associated antigen (TAA). TAAs are proteins expressed in cancer or tumor cells. Examples of TAAs include new antigens (neoantigens, which are expressed during tumorigenesis and altered from the analogous protein in a normal or healthy cell), products of oncogenes and tumor suppressor genes, overexpressed or aberrantly expressed cellular proteins (e.g. HER2, MUC1), antigens produced by oncogenic viruses (e.g. EBV, HPV, HCV, HBV, HTLV), cancer testis antigens (CTA, e.g. MAGE family, NY-ESO) and cell-type-specific differentiation antigens (e.g. MART-1). TAA sequences may be found experimentally, or in published scientific papers, or through publicly available databases, such as the database of the Ludwig Institute for Cancer Research (www.cta.lncc.br/), Cancer Immunity database (cancerimmunity.org/peptide/) and the TANTIGEN Tumor T cell antigen database (cvc.dfci.harvard.edu/tadb/). Exemplary TAAs are listed in Tables 2 and 22. A TSA is an antigen produced by a particular type of tumor that does not appear on normal cells of the tissue in which the tumor developed. TSAs include shared antigens, neoantigens, and unique antigens. In some cases the polypeptide is not expressed or is minimally expressed in normal healthy cells or tissues, but is expressed (in those cells or tissues) in a high proportion of (with a high frequency in) subjects having a particular disease or condition, such as a type of cancer or a cancer derived from a particular cell type or tissue. Alternatively, the polypeptide may be expressed at low levels in normal healthy cells, but at high levels (overexpressed) in diseased (e.g. cancer) cells or in subjects having the disease or condition. In some cases the polypeptide is expressed in, or expressed at a high level relative to normal healthy cells or subjects, in at least 1%, 2%, 3%, 4%, 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95% or more of such individuals, or of a subject-matched human subpopulation or model or target population. For example the population may be matched by ethnicity, geographical location, gender, age, disease, disease type or stage, genotype, and/or expression of one or more biomarkers. Expression frequencies (rates) may be determined from published figures and scientific publications.

In some cases the target polypeptide is a cancer testis antigens (CTA). CTA are not typically expressed beyond embryonic development in healthy cells. In healthy adults, CTA expression is limited to male germ cells that do not express HLAs and cannot present antigens to T cells. Therefore, CTAs are considered expressional neoantigens when expressed in cancer cells. CTA expression is (i) specific for tumor cells, (ii) more frequent in metastases than in primary tumors and (iii) conserved among metastases of the same patient (Gajewski ed. Targeted Therapeutics in Melanoma. Springer New York. 2012).

In some cases the target polypeptide is one that is associated with or expressed by cancer cells or cancer cells of a particular type or cancer of a particular cell type of tissue. In some cases the cancer is a solid tumour. In some cases the cancer is a carcinoma, sarcoma, lymphoma, leukemia, germ cell tumor, or blastoma. The cancer may be a hormone related or dependent cancer (e.g., an estrogen or androgen related cancer) or a non-hormone related or dependent cancer. The tumor may be malignant or benign. The cancer may be metastatic or non-metastatic. The cancer may or may not be associated with a viral infection or viral oncogenes. In some cases the cancer is one or more selected from melanoma, lung cancer, renal cell cancer, colorectal cancer, bladder cancer, glioma, head and neck cancer, ovarian cancer, non-melanoma skin cancer, prostate cancer, kidney cancer, stomach cancer, liver cancer, cervix uteri cancer, oesophagus cancer, non-Hodgkin lymphoma, leukemia, pancreatic cancer, corpus uteri cancer, lip cancer, oral cavity cancer, thyroid cancer, brain cancer, nervous system cancer, gallbladder cancer, larynx cancer, pharynx cancer, myeloma, nasopharynx cancer, Hodgkin lymphoma, testis cancer, breast cancer, gastric cancer, colorectal cancer, renal cell cancer, hepatocellular cancer, pediatric cancer and Kaposi sarcoma.

The polypeptide may be a viral protein that is expressed intracellularly. Examples include HPV16 E6, E7; HIV Tat, Rev, Gag, Pol, Env; HTLV-Tax, Rex, Gag, Env, Human herpes virus proteins, Dengue virus proteins. The polypeptide may be a parasite protein that is expressed intracellularly, for example malaria proteins.

Non-limiting examples of suitable polypeptides include those listed in one or more of Tables 2 to 5.

TABLE 2 LIST OF NAMED TUMOUR ANTIGENS WITH CORRESPONDING ACCESSION NUMBERS. 5T4 Q13641.1 A1BG P04217.1 A33 Q99795.1 A4GALT Q9NPC4.1 AACT P01011.1 AAG Q9M6E9.1 ABI1 Q8IZP0.1 ABI2 Q9NYB9.1 ABL1 P00519.1 ABL-BCR Q8WUG5.1 ABLIM3 O94929.1 ABLL P42684.1 ABTB1 Q969K4.1 ACACA Q13085.1 ACBD4 Q8NC06.1 ACO1 P21399.1 ACRBP Q8NEB7.1* ACTL6A O96019.1 ACTL8 Q9H568.1* ACTN4 O43707.1 ACVR1 Q04771.1 ACVR1B P36896.1 ACVR2B Q13705.1 ACVRL1 P37023.1 ACS2B Q68CK6.1 ACSL5 Q9ULC5.1 ADAM-15 Q13444.1 ADAM17 P78536.1 ADAM2 Q99965.1* ADAM29 Q9UKF5.1* ADAM7 Q9H2U9.1 ADAP1 O75689.1 ADFP Q99541.1 ADGRA3 Q8IWK6.1 ADGRF1 Q5T601.1 ADGRF2 Q8IZF7.1 ADGRL2 O95490.1 ADHFE1 Q8IWW8.1 AEN Q8WTP8.1 AFF1 P51825.1 AFF4 Q9UHB7.1 AFP P02771.1 AGAP2 Q99490.1 AGO1 Q9UL18.1 AGO3 Q9H9G7.1 AGO4 Q9HCK5.1 AGR2 O95994.1 AIFM2 Q9BRQ8.1 AIM2 O14862.1 AKAP-13 Q12802.1 AKAP-3 O75969.1* AKAP-4 Q5JQC9.1* AKIP1 Q9NQ31.1 AKT1 P31749.1 AKT2 P31751.1 AKT3 Q9Y243.1 ALDH1A1 P00352.1 ALK Q9UM73.1 ALKBH1 Q13686.1 ALPK1 Q96QP1.1 AMIGO2 Q86SJ2.1 ANG2 O15123.1 ANKRD45 Q5TZF3.1* ANO1 Q5XXA6.1 ANP32A P39687.1 ANXA2 P07355.1 APC P25054.1 APEH P13798.1 APOA2 P02652.1 APOD P05090.1 APOL1 O14791.1 AR P10275.1 ARAF P10398.1 ARF4L P49703.1 ARHGEF5 Q12774.1 ARID3A Q99856.1 ARID4A P29374.1 ARL6IP5 O75915.1 ARMC3 B4DXS3.1* ARMC8 Q8IUR7.1 ARTC1 P52961.1 ARX Q96QS3.1* ATAD2 Q6PL18.1 ATIC P31939.1 AURKC Q9UQB9.1 AXIN1 O15169.1 AXL P30530.1 BAAT Q14032.1 BAFF Q9Y275.1 BAGE-1 Q13072.1* BAGE-2 Q86Y30.1* BAGE-3 Q86Y29.1* BAGE-4 Q86Y28.1 BAGE-5 Q86Y27.1* BAI1 O14514.1 BAL P19835.1 BALF2 P03227.1 3ALF4 P03188.1 BALF5 P03198.1 BARF1 P03228.1 BBRF1 P03213.1 3CAN Q96GW7.1 BCAP31 P51572.1 BCL-2 P10415.1 BCL2L1 Q07817.1 3CL6 P41182.1 BCL9 O00512.1 BCR P11274.1 BCRF1 P03180.1 3DLF3 P03224.1 BGLF4 P13288.1 BHLF1 P03181.1 BHRF1 P03182.1 3ILF1 P03208.1 BILF2 P03218.1 BIN1 O00499.1 BING-4 O15213.1 3IRC7 Q96CA5.1 BLLF1 P03200.1 BLLF2 P03199.1 BMI1 P35226.1 3MLF1 Q04360.1 BMPR1B O00238.1 BMRF1 P03191.1 BNLF2a P0C739.1 3NLF2b Q8AZJ3.1 BNRF1 P03179.1 BRAF1 P15056.1 BRD4 O60885.1 BRDT Q58F21.1* BRI3BP Q8WY22.1 BRINP1 O60477.1 BRLF1 P03209.1 3TBD2 Q9BX70.1 BUB1B O60566.1 BVRF2 P03234.1 BXLF1 P03177.1 3ZLF1 P03206.1 C15orf60 Q7Z4M0.1* CA 12-5 Q8WXI7.1 CA 19-9 Q969X2.1 CA195 Q5TG92.1 CA9 Q16790.1 CABYR O75952.1* CADM4 Q8NFZ8.1 CAGE1 Q8CT20.1* CALCA P01258.1 CALR3 Q96L12.1 CAN P35658.1 CASC3 O15234.1 CASC5 Q8NG31.1* CASP5 P51878.1 CASP8 Q14790.1 CBFA2T2 O43439.1 CBFA2T3 O75081.1 CBL P22681.1 CBLB Q13191.1 CC3 Q9BUP3.1 CCDC110 Q8TBZ0.1* CCDC33 Q8N5R6.1* CCDC36 Q8IYA8.1* CCDC6 Q16204.1 CCDC62 Q6P9F0.1* CCDC68 Q9H2F9.1 CCDC83 Q8IWF9.1* CCL13 Q99616.1 CCL2 P13500.1 CCL7 P80098.1 CCNA1 P78396.1* CCNA2 P20248.1 CCNB1 P14635.1 CCND1 P24385.1 CCNE2 O96020.1 CCNI Q14094.1 CCNL1 Q9UK58.1 CCR2 P41597.1 CD105 P17813.1 CD123 P26951.1 CD13 P15144.1 CD133 O43490.1 CD137 Q07011.1 CD138 P18827.1 CD157 Q10588.1 CD16A P08637.1 CD178 P48023.1 CD19 P15391.1 CD194 P51679.1 CD2 P06729.1 CD20 P11836.1 CD21 P20023.1 CD22 P20273.1 CD229 Q9HBG7.1 CD23 P06734.1 CD27 P26842.1 CD28 P10747.1 CD30 P28908.1 CD317 Q10589.1 CD33 P20138.1 CD350 Q9ULW2.1 CD36 P16671.1 CD37 P11049.1 CD4 P01730.1 CD40 P25942.1 CD40L P29965.1 CD45 P08575.1 CD47 Q08722.1 CD51 P06756.1 CD52 P31358.1 CD55 P08174.1 CD61 P05106.1 CD70 P32970.1 CD74 P08922.1 CD75 P15907.1 CD79B P40259.1 CD80 P33681.1 CD86 P42081.1 CD8a P01732.1 CD8b P10966.1 CD95 P25445.1 CD98 P08195.1 CDC123 O75794.1 CDC2 P06493.1 CDC27 P30260.1 CDC73 Q6P1J9.1 CDCA1 Q9BZD4.1* CDCP1 Q9H5V8.1 CDH3 P22223.1 CDK2AP1 O14519.1 CDK4 P11802.1 CDK7 P50613.1 CDKN1A P38936.1 CDKN2A P42771.1 CEA P06731.1 CEACAM1 Q86UE4.1 CENPK Q9BS16.1 CEP162 Q5TB80.1 CEP290 O15078.1* CEP55 Q53EZ4.1* CFL1 P23528.1 CH3L2 Q15782.1 CHEK1 O14757.1 CK2 P19784.1 CLCA2 Q9UQC9.1 CLOCK O15516.1 CLPP Q16740.1 CMC4 P56277.1 CML66 Q96RS6.1 CO-029 P19075.1 COTL1 Q14019.1 COX2 P35354.1 COX6B2 Q6YFQ2.1* CPSF1 Q10570.1 CPXCR1 Q8N123.1* CREBL2 O60519.1 CREG1 O75629.1 Cripto P13385.1 CRISP2 P16562.1* *CRK P46108.1 CRKL P46109.1 CRLF2 Q9HC73.1 CSAGE Q6PB30.1 CT45 Q5HYN5.1* CT45A2 Q5DJT8.1* CT45A3 Q8NHU0.1* CT45A4 Q8N7B7.1* CT45A5 Q6NSH3.1* CT45A6 P0DMU7.1* CT46 Q86X24.1* CT47 Q5JQC4.1* CT47B1 P0C2P7.1* CTAGE2 Q96RT6.1* cTAGE5 O15320.1* CTCFL Q8NI51.1* CTDSP2 O14595.1 CTGF P29279.1 CTLA4 P16410.1 CTNNA2 P26232.1* CTNNB1 P35222.1 CTNND1 O60716.1 CTSH P09668.1 CTSP1 A0RZH4.1* CTTN Q14247.1 CXCR4 P61073.1 CXorf48 Q8WUE5.1* CXorf61 Q5H943.1* Cyclin-E P24864.1 CYP1B1 Q16678.1 CypB P23284.1 CYR61 O00622.1 CS1 P28290.1 CSAG1 Q6PB30.1* CSDE1 O75534.1 CSF1 P09603.1 CSF1R P07333.1 CSF3R Q99062.1 CSK P41240.1 CSK23 Q8NEV1.1 DAPK3 O43293.1 DAZ1 Q9NQZ3.1 DBPC Q9Y2T7.1 DCAF12 Q5T6F0.1* DCT P40126.1 DCUN1D1 Q96GG9.1 DCUN1D3 Q8IWE4.1 DDR1 Q08345.1 DDX3X O00571.1 DDX6 P26196.1 DEDD O75618.1 DEK P35659.1 DENR O43583.1 DEPDC1 Q5TB30.1 DFNA5 O60443.1 DGAT2 Q96PD7.1 DHFR P00374.1 DKK1 O94907.1 DKK3 Q9UBP4.1 DKKL1 Q9UK85.1* DLEU1 O43261.1 DMBT1 Q9UGM3.1 DMRT1 Q9Y5R6.1* DNAJB8 Q8NHS0.1* DNAJC8 O75937.1 DNMT3A Q9Y6K1.1 DPPA2 Q7Z7J5.1* DR4 O00220.1 DR5 O14763.1 DRG1 Q9Y295.1* DSCR8 Q96T75.1 E2F3 O00716.1 E2F6 O75461.1 E2F8 A0AVK6.1 EBNA1 P03211.1 EBNA2 P12978.1 EBNA3 P12977.1 EBNA4 P03203.1 EBNA6 P03204.1 EBNA-LP Q8AZK7.1 E-cadherin P12830.1 ECT2 Q9H8V3.1 ECTL2 Q008S8.1 EDAG Q9BXL5.1* EEF2 P13639.1 EFNA1 P20827.1 EFS O43281.1 EFTUD2 Q15029.1 EGFL7 Q9UHF1.1 EGFR p00533.1 EI24 O14681.1 EIF4EBP1 Q13541.1 ELF3 P78545.1 ELF4 Q99607.1 ELOVL4 Q9GZR5.1* EMP1 P54849.1 ENAH Q8N8S7.1 Endosialin Q9HCU0.1 ENO1 P06733.1 ENO2 P09104.1 ENO3 P13929.1 ENTPD5 O75356.1 EpCAM P16422.1 EPHA2 P29317.1 EPHA3 P29320.1 EPHB2 P29323.1 EPHB4 P54760.1 EPHB6 O15197.1 EPS8 Q12929.1 ERBB3 P21860.1 ERBB4 Q15303.1 EREG O14944.1 ERG P11308.1 ERVK-18 O42043.1 ERVK-19 O71037.1 ESR1 P03372.1 ETAA1 Q9NY74.1 ETS1 P14921.1 ETS2 P15036.1 ETV1 P50549.1 ETV5 P41161.1 ETV6 P41212.1 EVI5 O060447.1 EWSR1 Q01844.1 EYA2 O00167.1 EZH2 Q15910.1 FABP7 O15540.1 FAM133A Q8N9E0.1* FAM13A O94988.1 F2M46D Q8NEK8.1* FAM58BP P0C7Q3.1 FANCG O15287.1 FATE1 Q969F0.1* FBXO39 Q8N4B4.1* FBXW11 Q9UKB1.1 FCHSD2 O94868.1 FER P16591.1 FES P07332.1 FEV Q99581.1 FGF10 O15520.1 FGF23 Q9GZV9.1 FGF3 P11487.1 FGF4 P08620.1 FGF5 P12034.1 FGFR1 P11362.1 FGFR2 P21802.1 FGFR3 P22607.1 FGFR4 P22455.1 FGR P09769.1 FLI1 Q01543.1 FLT3 P36888.1 FMNL1 O95466.1 FMOD Q06828.1 FMR1NB Q8N0W7.1* FN1 P02751.1 Fn14 Q9NP84.1 FNIP2 Q9P278.1 FOLR1 P15328.1 FOS P01100.1 FosB P53539.1 FOSL1 P15407.1 FOXM1 Q08050.1 FOXO1 Q12778.1 FOXO3 O43524.1 FRAT1 Q92837.1 FRMD3 A2A2Y4.1 FSIP1 Q8NA03.1 FSIP2 Q5CZC0.1 FSTL3 O95633.1 FTHL17 Q9BXU8.1* FUNDC2 Q9BWH2.1 FUS P35637.1 FUT1 P19526.1 FUT3 P21217.1 FYN P06241.1 GAB2 Q9UQC2.1 GADD45G O95257.1 GAGE-1 Q13065.1 GAGE12B/C/D/E GAGE12F P0CL80.1 GAGE12G P0CL81.1 GAGE12H A6NDE8.1 A1L429.1 GAGE12I P0CL82.1 GAGE12J A6NER3.1 GAGE-2 Q6NT46.1 GAGE-3 Q13067.1 GAGE-4 Q13068.1 GAGE-5 Q13069.1 GAGE-6 Q13070.1 GAGE-7 O76087.1 GAGE-8 Q9UEU5.1 GALGT2 Q00973.1 GAS7 O60861.1 GASZ Q8WWH4.1 GATA-3 P23771.1 GBU4-5 Q587J7.1 GCDFP-15 P12273.1 GFAP P14136.1 GFI1 Q99684.1 Ghrelin Q9UBU3.1 GHSR Q92847.1 GIPC1 O14908.1 GITR Q9Y5U5.1 GKAP1 Q5VSY0.1 GLI1 P08151.1 Glypican-3 P51654.1 GML Q99445.1 GNA11 P29992.1 GNAQ P50148.1 GNB2L1 P63244.1 GOLGA5 Q8TBA6.1 gp100 P40967.1 gp75 P17643.1 Gp96 P14625.1 GPAT2 Q6NUI2.1* GPATCH2 Q9NW75.1* GPC-3 P51654.1 GPNMB Q14956.1 GPR143 P51810.1 GPR89A B7ZAQ6.1 GRB2 P62993.1 GRP78 P11021.1 GUCY1A3 Q02108.1 H3F3A P84243.1 HAGE Q9NXZ2.1* hANP P01160.1 HBEGF Q99075.1 hCG-beta P01233.1 HDAC1 Q13547.1 HDAC2 Q92769.1 HDAC3 O15379.1 HDAC4 P56524.1 HDAC5 Q9UQL6.1 HDAC6 Q9UBN7.1 HDAC7 Q8WUI4.1 HDAC8 Q9BY41.1 HDAC9 Q9UKV0.1 HEATR1 Q9H583.1 Hepsin P05981.1 Her2/neu P04626.1 HERC2 O95714.1 HERV-K104 P61576.1 HEXB P07686.1 HEXIM1 O94992.1 HGRG8 Q9Y5A9.1 HIPK2 Q9H2X6.1 HJURP Q8NCD3.1 HMGB1 P09429.1 HMOX1 P09601.1 HNRPL P14866.1 HOM-TES-85 Q9P127.1* HORMAD1 Q86X24.1* HORMAD2 Q8N7B1.1* HPSE Q9Y251.1 HPV16 E6 P03126.1 HPV16 E7 P03129.1 HPV18 E6 P06463.1 HPV18 E7 P06788.1 HRAS P01112.1 HSD17B13 Q7Z5P4.1 HSP105 Q92598.1 HSP60 P10809.1 HSPA1A P08107.1 HSPB9 Q9BQS6.1* HST-2 P10767.1 HT001 Q2TB18.1 hTERT O14746.1 HUS1 O60921.1 ICAM-1 P05362.1 IDH1 O75874.1 IDO1 P14902.1 IER3 P46695.1 IGF1R P08069.1 IGFS11 Q5DX21.1* IL13RA2 Q14627.1* IMP-3 Q9NV31.1* ING3 Q9NXR8.1 INPPL1 O15357.1 INTS6 Q9UL03.1 IRF4 Q15306.1 IRS4 O14654.1 ITGA5 P08648.1 ITGB8 P26012.1 ITPA Q9BY32.1 ITPR2 Q14571.1 JAK2 O60674.1 JAK3 P52333.1 JARID1B Q9UGL1.1* JAZF1 Q86VZ6.1 JNK1 P45983.1 JNK2 P45984.1 JNK3 P53779.1 JTB O76095.1 JUN P05412.1 JUP P14923.1 K19 P08727.1 KAAG1 Q9UBP8.1 Kallikrein 14 Q9P0G3.1 Kallikrein 4 Q9Y5K2.1 KAT6A Q92794.1 KDM1A O60341.1 KDM5A P29375.1 KIAA0100 Q14667.1* KIAA0336 Q8IWJ2.1 KIAA1199 Q8WUJ3.1 KIAA1641 A6QL64.1 KIF11 P52732.1 KIF1B O60333.1 KIF20A O95235.1 KIT P10721.1 KLF4 O43474.1 KLHL41 O60662.1 KLK10 O43240.1 KMT2D O14686.1 KOC1 O00425.1 K-ras P01116.1 KRIT1 O00522.1 KW-12 P62913.1 KW-2 Q96RS0.1 KW-5 (SEBD4) Q9H0Z9._ KW-7 O75475.1 L1CAM P32004.1 L53 Q96EL3.1 L6 Q9BTT4.1 LAG3 P18627.1 Lage-1 O75638.1* LATS1 O95835.1 LATS2 Q9NRM7.1 LCMT2 O60294.1 LCP1 P13796.1 LDHC P07864.1* LDLR P01130.1 LEMD1 Q68G75.1* Lengsin Q5TDP6.1 LETMD1 Q6P1Q0.1 LGALS3BP Q08380.1 LGALS8 O00214.1 LIN7A O14910.1 LIPI Q6XZB0.1* LIV-1 Q13433.1 LLGL1 Q15334.1 LMO1 P25800.1 LMO2 P25791.1 LMP1 P03230.1 LMP2 P13285.1 LOC647107 Q8TAI5.1* LOXL2 Q9Y4K0.1 LRP1 Q07954.1 LRRN2 O75325.1 LTF P02788.1 LTK P29376.1 LZTS1 Q9Y250.1 LY6K Q17RY6.1* LYN P07948.1 LYPD6B Q8NI32.1* MAEA Q7L5Y9.1 MAEL Q96JY0.1* MAF O75444.1 MAFF Q9ULX9.1 MAFG O15525.1 MAFK O60675.1 MAGE-A1 P43355.1* MAGE-A10 P43363.1* MAGE-A11 P43364.1* MAGE-A12 P43365.1* MAGE-A2 P43356.1* MAGE-A2B Q6P448.1* MAGE-A3 P43357.1* MAGE-A4 P43358.1* MAGE-A5 P43359.1* MAGE-A6 P43360.1* MAGE-A8 P43361.1* MAGE-A9 P43362.1* MAGE-B1 P43366.1* MAGE-B2 O15479.1* MAGE-B3 O15480.1* MAGE-B4 O15481.1* MAGE-B5 Q9BZ81.1* MAGE-B6 Q8N7X4.1* MAGE-C1 O60732 .1* MAGE-C2 Q9UBF1.1* MAGE-C3 Q8TD91.1* mammaglobin-A MANF P55145.1 MAP2K2 P36507.1 MAP2K7 O14733.1 Q13296.1 MAP3K7 O43318.1 MAP4K5 Q9Y4K4.1 MART1 Q16655.1 MART-2 Q5VTY9.1 MAS1 P04201.1 MC1R Q01726.1 MCAK Q99661.1* MCF2 P10911.1 MCF2L O15068.1 MCL1 Q07820.1 MCTS1 Q9ULC4.1 MCSP Q6UVK1.1 MDK P21741.1 MDM2 Q00987.1 MDM4 O15151.1 ME1 P48163.1 ME491 P08962.1 MECOM Q03112.1 MELK Q14680.1 MEN1 O00255.1 MERTK Q12866.1 MET P08581.1 MFGE8 Q08431.1 MFHAS1 Q9Y4C4.1 MFI2 P08582.1 MGAT5 Q09328.1 Midkine P21741.1 MIF P14174.1 MK167 P46013.1 MLH1 P40692.1 MLL Q03164.1 MLLT1 Q03111.1 MLLT10 P55197.1 MLLT11 Q13015.1 MLLT3 P42568.1 MLLT4 P55196.1 MLLT6 P55198.1 MMP14 P50281.1 MMP2 P08253.1 MMP7 P09237.1 MMP9 P14780.1 MOB3B Q86TA1.1 MORC1 Q86VD1.1* MPHOSPH1 Q96Q89.1* MPL P40238.1 MRAS O14807.1 MRP1 P33527.1 MRP3 O15438.1 MRPL28 Q13084.1 MRPL30 Q8TCC3.1 MRPS11 P82912.1 MSLN Q13421.1 MTA1 Q13330.1 MTA2 O94776.1 MTA3 Q9BTC8.1 MTCP1 P56278.1 MTSS1 O43312.1 MUC-1 P15941.1 MUC-2 Q02817.1 MUC-3 Q02505.1 MUC-4 Q99102.1 MUC-5AC P98088.1 MUC-6 Q6W4X9.1 MUM1 Q2TAK8.1 MUM2 Q9Y5R8.1 MYB P10242.1 MYC P01106.1 MYCL P12524.1 MYCLP1 P12525.1 MYCN P04198.1 MYD88 Q99836.1 MYEOV Q96EZ4.1 MYO1B O43795.1 NA88-A P0C5K6.1* NAE1 Q13564.1 Napsin-A O96009.1 NAT6 Q93015.1 NBAS A2RRP1.1 NBPF12 Q5TAG4.1 NCOA4 Q13772.1 NDC80 O14777.1 NDUFC2 O95298.1 Nectin-4 Q96NY8.1 NEK2 P51955.1 NEMF O60524.1 NENF Q9UMX5.1 NEURL1 O76050.1 NFIB O00712.1 NFKB2 Q00653.1 NF-X1 Q12986.1 NFYC Q13952.1 NGAL P80188.1 NGEP Q6IWH7.1 NKG2D-L1 Q9BZM6.1 NKG2D-L2 Q9BZM5.1 NKG2D-L3 Q9BZM4.1 NKG2D-L4 Q8TD07.1 NKX3.1 Q99801.1 NLGN4X Q8N0W4.1 NLRP4 Q96MN2.1* NNMT P40261.1 NOL4 O94818.1* NOTCH2 Q04721.1 NOTCH3 Q9UM47.1 NOTCH4 Q99466.1 NOV P48745.1 NPM1 P06748.1 NR6A1 Q15406.1* N-RAS P01111.1 NRCAM Q92823.1 NRP1 O14786.1 NSE1 Q96KN4.1 NSE2 Q96KN1.1 NTRK1 P04629.1 NUAK1 O60285.1 NUGGC Q68CJ6.1 NXF2 Q9GZY0.1* NXF2B Q5JRM6.1* NY-BR-1 Q9BXX3.1 NYD-TSPG Q9BWV7.1 NY-ESO-1 P78358.1* NY-MEL-1 P57729.1 OCA2 Q04671.1 ODF1 Q14990.1* ODF2 Q5BJF6.1* ODF3 Q96PU9.1* ODF4 Q2M2E3.1* OGG1 O15527.1 OGT O15294.1 OIP5 O43482.1* OS9 Q13438.1 OTOA Q05BM7.1* OX40 P43489.1 OX40L P23510.1 P53 P04637.1 P56-LCK P06239.1 PA2G4 Q9UQ80.1 PAGE1 O75459.1* PAGE2 Q7Z2X2.1* PAGE2B Q5JRK9.1* PAGE3 Q5JUK9.1* PAGE4 O60829.1* PAGE5 Q96GU1.1* PAK2 Q13177.1 PANO1 I0J062.1 PAP Q06141.1 PAPOLG Q9BWT3.1 PARK2 O60260.1 PARK7 Q99497.1 PARP12 Q9H0J9.1 PASD1 Q8IV76.1* PAX3 P23760.1 PAX5 Q02548.1 PBF P00751.1 PBK Q96KB5.1* PBX1 P40424.1 PCDC1 Q15116.1 PCM1 Q15154.1 PCNXL2 A6NKB5.1 PDGFB P01127.1 PDGFRA P16234.1 PEPP2 Q9HAU0.1* PGF P49763.1 PGK1 P00558.1 PHLDA3 Q9Y5J5.1 PHLPP1 O60346.1 PIAS1 O75925.1 PIAS2 O75928.1 PIK3CA P42336.1 PIK3CD O00329.1 PIK3R2 O00459.1 PIM1 P11309.1 PIM2 Q9P1W9.1 PIM3 Q86V86.1 PIR O00625.1 PIWIL1 Q96J94.1* PIWIL2 Q8TC59.1* PIWIL3 Q7Z3Z3.1 PIWIL4 Q7Z3Z4.1 PKN3 Q6P5Z2.1 PLA2G16 P53816.1 PLAC1 Q9HBJ0.1* PLAG1 Q6DJT9.1 PLEKHG5 O94827.1 PLK3 Q9H4B4.1 PLS3 P13797.1 PLVAP Q9BX97.1 PLXNB1 O43157.1 PLXNB2 O15031.1 PML P29590.1 PML-RARA Q96QH2.1 POTEA Q6S8J7.1* POTEB Q6S5H4.1* POTEC B2RU33.1* POTED Q86YR6.1* POTEE Q6S8J3.1* POTEG Q6S5H5.1* POTEH Q6S545.1* PP2A P63151.1 PPAPDC1B Q8NEB5.1 PPFIA1 Q13136.1 PPIG Q13427.1 PPP2R1B P30154.1 PRAME P78395.1* PRDX5 P30044.1 PRKAA1 Q13131.1 PRKCI P41743.1 PRM1 P04553.1* PRM2 P04554.1* PRMT3 O60678.1 PRMT6 Q96LA8.1 PDL1 Q9NZQ7.1 PROM1 O43490.1 PRSS54 Q6PEW0.1* PRSS55 Q6UWB4.1* PRTN3 P24158.1 PRUNE Q86TP1.1 PRUNE2 Q8WUY3.1 PSA P07288.1 PSCA D3DWI6.1 PSMA Q04609.1 PSMD10 O75832.1 PSGR Q9H255.1 PSP-94 Q1L6U9.1 PTEN P60484.1 PTH-rP P12272.1 PTK6 Q13882.1 PTPN20A Q4JDL3.1* PTPRK Q15262.1 PTPRZ P23471.1 PTTG-1 O95997.1 PTTG2 Q9NZH5.1 PTTG3 Q9NZH4.1 PXDNL A1KZ92.1 RAB11FIP3 O75154.1 RAB8A P61006.1 RAD1 O60671.1 RAD17 O75943.1 RAD51C O43502.1 RAF1 P04049.1 RAGE-1 Q9UQ07.1 RAP1A P62834.1 RARA P10276.1 RASSF10 A6NK89.1 RB1 P06400.1 RBL2 Q08999.1 RBM46 Q8TBY0.1* RBP4 P02753.1 RCAS1 O00559.1 RCVRN P35243.1 RECQL4 O94761.1 RET P07949.1 RGS22 Q8NE09.1* RGS5 O15539.1 RHAMM O75330.1 RhoC P08134.1 RHOXF2 Q9BQY4.1 RL31 P62888.1 RNASET2 O00584.1 RNF43 Q68DV7.1 RNF8 O76064.1 RON Q04912.1 ROPN1A Q9HAT0.1* ROR1 Q01973.1 RPA1 O95602.1 RPL10A P62906.1 RPL7A P62424.1 RPS2 P15880.1 RPS6KA5 O75582.1 RPSA P08865.1 RQCD1 Q92600.1* RRAS2 P62070.1 RSL1D1 O76021.1 RTKN Q9BST9.1 RUNX1 Q01196.1 RUNX2 Q13950.1 RYK P34925.1 SAGE1 Q9NXZ1.1* SART2 Q9UL01.1 SART3 Q15020.1 SASH1 O94885.1 sCLU P10909.1 SCRN1 Q12765.1 SDCBP O00560.1 SDF-1 P48061.1 SDHD O14521.1 SEC31A O94979.1 SEC63 Q9UGP8.1 Semaphorin 4D SEMG1 P04279.1* SFN P31947.1 SH2B2 O14492.1 Q92854.1 SH2D1B O14796.1 SH3BP1 Q9Y3L3.1 SHB Q15464.1 SHC3 Q92529.1 SIRT2 Q8IXJ6.1 SIVA1 O15304.1 SKI P12755.1 SLBP A9UHW6.1 SLC22A10 Q63ZE4.1 SLC25A47 Q6Q0C1.1 SLC35A4 Q96G79.1 SLC45A3 Q96JT2.1 SLC4A1AP Q9BWU0.1 SLCO6A1 Q86UG4.1* SLITRK6 Q9H5Y7.1 Sm23 P27701.1 SMAD5 Q99717.1 SMAD6 O43541.1 SMO Q99835.1 Smt 3B P61956.1 SNRPD1 P62314.1 SOS1 Q07889.1 SOX-2 P48431.1 SOX-6 P35712.1 SOX-11 P35716 .1 SPA17 Q15506.1* SPACA3 Q8IXA5.1* SPAG1 Q07617.1* SPAG17 Q6Q759.1* SPAG4 Q9NPE6.1* SPAG6 O75602.1* SPAG8 Q99932.1* SPAG9 O60271.1* SPANXA1 Q9NS26.1* SPANXB Q9NS25.1* SPANXC Q9NY87.1* SPANXD Q9BXN6.1* SPANXE Q8TAD1.1* SPANXN1 Q5VSR9.1* SPANXN2 Q5MJ10.1* SPANXN3 Q5MJ09.1* SPANXN4 Q5MJ08.1* SPANXN5 Q5MJ07.1* SPATA19 Q7Z5L4.1* SPEF2 Q9C093.1* SPI1 P17947.1 SPINLW1 O95925.1* SPO11 Q9Y5K1.1* SRC P12931.1 SSPN Q14714.1 SSX-1 Q16384.1* SSX-2 Q16385.1* SSX-3 Q99909.1* SSX-4 O60224.1* SSX-5 O60225.1* SSX-6 Q7RTT6.1* SSX-7 Q7RTT5.1* SSX-9 Q7RTT3.1* ST18 O60284.1 STAT1 P42224.1 STEAP1 Q9UHE8.1 STK11 Q15831.1 STK25 O00506.1 STK3 Q13188.1 STN Q9H668.1 SUPT7L O94864.1 Survivin O15392.1 SUV39H1 O43463.1 SYCE1 Q8N0S2.1 SYCP1 Q15431.1 SYCP3 Q8IZU3.1 SYT Q15532.1 TA-4 Q96RI8.1 TACC1 O75410.1 TAF1B Q53T94.1 TAF4 O00268.1 TAF7L Q5H9L4.1* TAG-1 Q02246.1* TAL1 P17542.1 TAL2 Q16559.1 TAPBP O15533.1 TATI P00995.1 TAX1BP3 O14907.1 TBC1D3 Q8IZP1.1 TBP-1 P17980.1 TCL1A P56279.1 TCL1B O95988.1 TDHP Q9BT92.1 TDRD1 Q9BXT4.1* TDRD4 Q9BXT8.1* TDRD6 O60522.1* TEKT5 Q96M29.1* TEX101 Q9BY14.1* TEX14 Q8IWB6.1* TEX15 Q9BXT5.1* TEX38 Q6PEX7.1* TF P02787.1 TFDP3 Q5H9I0.1* TFE3 P19532.1 TGFBR1 P36897.1 TGFBR2 P37173.1 THEG Q9P2T0.1* TIE2 Q02763.1 TIPRL O75663.1 TLR2 O60603.1 TMEFF1 Q8IYR6.1* TMEFF2 Q9UIK5.1* TMEM108 Q6UXF1.1* TMEM127 O75204.1 TMPRSS12 Q86WS5.1* TNC P24821.1 TNFRSF17 Q02223.1 TNFSF15 O95150.1 TNK2 Q07912.1 TOMM34 Q15785.1 TOP2A P11388.1 TOP2B Q02880.1 TOR3A Q9H497.1 TP73 O15350.1 TPA1 8N543.1 TPGS2 Q68CL5.1 TPI1 P60174.1 TPL2 P41279.1 TPM4 P67936.1 TPO P40225.1 TPPP2 P59282.1* TPR P12270.1 TPTE P56180.1* TRAF5 O000463.1 TRAG-3 Q9Y5P2.1* TRGC2 P03986.1 TRIM24 O15164.1 TRIM37 O94972.1 TRIM68 Q6AZZ1.1 TRPM8 Q7Z2W7.1 TSGA10 Q9BZW7.1* TSP50 Q9UI38.1* TSPAN6 O43657.1 TSPY1 Q01534.1* TSPY2 A6NKD2.1* TSPY3 Q6B019.1* TSPYL1 Q9H0U9.1 TSSK6 Q9BXA6.1* TTC23 Q5W5X9.1 TTK P33981.1* TULP2 O00295.1* TUSC2 O75896.1 TWEAK O43508.1 TXNIP Q9H3M7.1 TYMS P04818.1 TYR P14679.1 U2 snRNP B P08579.1 U2AF1 Q01081.1 UBD O15205.1 UBE2A P49459.1 UBE2C O00762.1 UBE2V1 Q13404.1 UBE4B O95155.1 UBR5 O95071.1 UBXD5 Q5T124.1 UFL1 O94874.1 URI1 O94763.1 URLC10 Q17RY6.1 UROC1 Q96N76.1 USP2 O75604.1 USP4 Q13107.1 VAV1 P15498.1 VCX3A Q9NNX9.1 VEGFR1 P17948.1 VEGFR2 P35968.1 VHL P40337.1 VIM P08670.1 VWA5A O00534.1 WHSC2 Q9H3P2.1 WISP1 O95388.1 WNK2 Q9Y3S1.1 WNT10B O00744.1 WNT3 P56703.1 WNT-5a P41221.1 WT1 P19544.1 WWP1 Q9H0M0.1 XAGE-1 Q9HD64.1* XAGE-2 Q96GT9.1* XAGE-3 Q8WTP9.1* XAGE-4 Q8WWM0.1 XAGE-5 Q8WWM1.1* XBP1 P17861.1 XPO1 O14980.1 XRCC3 O43542.1 YB-1 P67809.1 YEATS4 O95619.1 YES1 P07947.1 YKL-40 P36222.1 ZBTB7A O95365.1 ZBTB7C A1YPR0.1 ZEB1 P37275.1 ZFYVE19 Q96K21.1 ZNF165 P49910.1* ZNF185 O15231.1 ZNF217 O75362.1 ZNF320 A2RRD8.1 ZNF395 Q9H8N7.1 ZNF645 Q8N7E2.1* ZUBR1 Q5T4S7.1 ZW10 O43264.1 ZWINT O95229.1 Ropporin-lA Q9HAT0 WBP2NL Q6ICG8.1 Table 2 optionally excludes Ropporin-1A Q9HAT0 and/or WBP2NL Q6ICG8.1. CTAs/TSAs = bold and *

TABLE 3 LIST OF ACCESSION NUMBERS FOR VIRAL ANTIGENS FROM IEDB Q76R62.1 P03182.1 P09258.1 P09310.1 P03227.1 P89466.1 P04601.1 P13285.1 P09991.1 P03468.1 A2T3Q0.1 P0C6X7.1 P89448.1 P12978.1 P09257.1 P50641.1 P14075.1  20178567.1 Q01023.1 P03188.1 P04585.1 P0C767.1 P12977.1 P89467.1 Q9W850.1 Q00683.1 P04591.1 P03211.1  9628706.1 P03460.1 P08666.1 P03485.1 Q04360.1 Q913Y7.1 P89449.1 Q81871.1 P03452.1 P17763.1 P89430.1 P03410.1 P04012.1 P27958.1 Q6WB99.1 P25212.1 Q9PZT1.1 P68593.1 P03203.1 P29996.1 9629374.1 P59633.1 O42053.1 P0C6L3.1 P59635.1 Q9YZN9.1 Q6WB95.1 P10233.1 P89475.1 Q6WB98.1 Q6SW67.1 Q7TFA0.1 P0CK17.1 P59594.1 1980491.1 P14079.1 P15423.1  1891762.1 P09259.1 P09269.1 Q77Q38.1 Q786F2.1 Q6SW99.1 P24771.1 F5HB98.1  9629370.1 P68336.1 P03300.1  1980486.1 Q69027.1 P28284.1 P13290.1 9626585.1 P06923.1 P14076.1 P03346.1 O42062.1 P07566.1 P03204.1 Q69091.1 P09255.1 P03206.1 O36634.1 P10205.1 F5HCM1.1 P0CK16.1 Q6WB97.1 Q85601.1 P89468.1 Q69467.1 P03218.1 Q786F3.1 P59637.1  1891763.1 Q6W394.1 P03231.1 Q9IK92.1 Q6WBA1.1 P03466.1 P14335.1 P26670.1 Q9PZT0.1 1985356.1 Q2HR63.1 P59634.1 Q6SW59.1 P03277.1 P59595.1 Q69028.1 P03383.1 P03261.1 P03200.1 P04578.1 P06484.1 F5HC97.1 S5TC82.1 P18095.1 Q96895.1 P18094.1  9629372.1 P50791.1 P03230.1 P13845.1 9629712.1 P03209.1 P03129.1 Q76R61.1 P03228.1 P0C206.1 Q9WMB5.1 P03226.1 Q9QR69.1 O36633.1 O42049.1 P03496.1 P03428.1 P03431.1 P0C0U1.1 P03433.1 P03508.1  1980456.1 P0C739.1 P69726.1 P69723.1 1980490.1 532129755.1 P03120.1 P04020.1 P06922.1 P03114.1 P03314.1 P06790.1 P06788.1 P06927.1 P03101.1 P03107.1 P06794.1 530787712.1 P04013.1 Q80872.1 P04014.1 P03126.1 P36811.1 P06463.1 P26554.1 P04016.1 P14078.1 P03191.1 1980471.1 P06821.1 P0C797.1 F5HF49.1 P0C045.1 P04296.1 P04485.1 P10230.1 P10221.1 P06487.1 P10215.1 P04293.1 P10211.1 P10209.1 P10225.1 P10224.1 P10238.1 P10185.1 P08392.1 P10231.1 P06492.1 P04290.1 P08393.1 P08543.1 P10210.1 P08617.1 F5HB53.1 P04019.1 P04015.1 P89442.1 P89452.1 P89462.1 P59632.1 O36635.1 P07210.1 Q83884.1 Q8JUX5.1 P03089.1 Q66479.1 P03185.1 P0CAP6.1 P04618.1  56160929.1 1980519.1 P08669.1 P14348.1 P03212.1 P03179.1 45617-  1511872.1 302317869.1 P69899.1 P09247.1 Q05127.1 P18272.1 other.1 Q9YMG2.1 Q05128.1 302371215.1 302371218.1 Q5XX08.1 302371214.1 P14336.1 138948- other.1 P08292.1 1803956.1 P35253.1  1891726.1 P09308.1 P03189.1 667489389.1 P09272.1 34365530.1 Q05320.1 P59596.1 P32886.1  55097.1 P03316.1 P03276.1 Q81870.1 Q81862.1 64320.1  1933190.1

TABLE 4 LIST OF ACCESSION NUMBERS FOR BACTERIAL ANTIGENS FROM IEDB B8ZUD1.1 P09621.1 P9WPE5.1 Q2GI62.1 P0A5B8.1 O50443.1 Q5NEZ3.1 P9WQF5.1 P9WK95.1 O05311.1 P9WQD7.1 P9WKG3.1 P9WHE5.1 P0CD83.1 P9WHB9.1 P9WH91.1 P9WHE3.1 P9WNK7.1 A0A0F3MKF3.1 A1JIP3.1 B2RKS6.1 P0A1D3.1 P0A6F5.1 P0COZ7.1 P0C923.1 P61439.1 Q9Z708.1 P0A521.1 P9WPE7.1 Q79FJ2.1 B8ZR84.1 I6Y3P5.1 Q2FYP2.1 P9WG41.1 P96890.1 O06625.1 I6X654.1 Q8YIE1.1 P9WQ81.1 I6XWA1.1 P11311.1 O53900.1 P9WIR7.1 P9WQB1.1 B8ZUC6.1 O06802.1 P9WMK1.1 P9WG37.1 Q2FWC4.1 Q2GGE3.1 O33347.1 P9WJ09.1 P9WJ11.1 P9WF23.1 O69703.1 I6X4K0.1 B2RM93.1 P71888.1 P9WFW3.1 P9WPV1.1 P9WPU7.1 P9WPV3.1 P9WPU5.1 O50391.1 P9WID7.1 P9WPC3.1 P96901.1 O84848.1 Q2FUX4.1 A0A0M1YNY3.1 P49944.1 P9WPQ9.1 Q45010.1 Q2FZK7.1 P9WMN3.1 P9WPQ1.1 Q45013.1 O53666.1 Q5NEH1.1 P9WHR5.1 P9WIE5.1 Q5NEQ3.1 P9WNF3.1 F2QBN0.1 B8ZTB7.1 P0C922.1 P9WMJ9.1 Q5NGW2.1 P01556.1 Q8DMZ4.1 P33768.1 Q2FUY2.1 Q5NG56.1 X8CE55.1 Q5NGE4.1 P94973.1 O06827.1 P96872.1 I6X9Y7.1 I6XFZ8.1 O50442.1 O53697.1 O53978.1 P95137.1 P95144.1 O53519.1 Q79FZ8.1 P9WJF5.1 P71629.1 P9WJS3.1 P9WPB7.1 Q7D911.1 P9WHS1.1 O06393.1 P9WP69.1 P9WPN5.1 P9WNX3.1 O53380.1 I6YAU3.1 P0A4V2.1 P9WQP3.1 P0C212.1 P9WQP1.1 P9WQN9.1 O53311.1 P9WIS7.1 O06159.1 H2GU79.1 Q2G2Q0.1 P9WNV1.1 P9WNV5.1 Q8YE98.1 Q59191.1 P9WGY7.1 P9WGY9.1 Q2G2W1.1 P9WGH1.1 P9WNG9.1 P9WNG7.1 O84591.1 Q9Z7A6.1 P9WGR1.1 P96404.1 I6YGS0.1 Q6MX18.1 P9WNK5.1 O53692.1 P9WNK3.1 P9WNK1.1 P9WNJ9.1 P9WNJ7.1 P9WNJ5.1 P9WNJ3.1 P9WNJ1.1 P9WNI9.1 P96903.1 P9WNB1.1 P9WJE1.1 P9WJD9.1 P9WJD7.1 P9WJD3.1 P9WJC5.1 P9WJC3.1 P9WJC1.1 P9WNQ3.1 P9WJE5.1 P9WJC7.1 O84646.1 I6YDV4.1 P11439.1 Q5NFJ1.1 P9WNE5.1 P14738.1 P11089.1 H7C7G3.1 L7N6B9.1 I6XFI7.1 O05578.1 P96218.1 P9WN39.1 P9WN59.1 Q8YBI3.1 P9WN83.1 P9WJA9.1 P9WMY9.1 Q5NH51.1 O53673.1 P9WIP9.1 P0CE15.1 P72041.1 Q5NEM8.1 Q5NI16.1 P9WJA3.1 P0A4Q1.1 P9WIP1.1 P9WIN9.1 P9WNF5.1 O50846.1 Q59947.1 H7C7N8.1 Q5NEC6.1 O84606.1 P9WQJ9.1 P9WQJ7.1 P9WQ71.1 O53611.1 P9WKL1.1 P9WKJ7.1 D5V9Y8.1 P0CC04.1 P23700.1 P9WJN5.1 Q5NHJ0.1 Q5NEY9.1 P15917.1 Q2G155.1 O34094.1 Q8F8E1.1 O69661.1 H6MMU4.1 P9WK61.1 P9WK55.1 Q8YGS9.1 O50811.1 P9WQ59.1 P9WIN7.1 P9WIR1.1 O50430.1 D5VCH6.1 Q5NHI7.1 P9WFU9.1 I6XFY8.1 B2RH54.1 Q46409.1 P30690.1 A0A0J5IWN3.1 A0PSI5.1 A4TAC4.1 B1MB69.1 B2HSY2.1 B8ZSN3.1 E4WHS0.1 P9WK17.1 V5XE39.1 I6X7G8.1 I6Y461.1 I6YGB1.1 I6YC99.1 Q79FY7.1 I6X5Z8.1 I6Y479.1 I6YA32.1 O05461.1 Q2G1E2.1 P9WK19.1 I6YAW3.1 Q5NGG4.1 O51624.1 P9WJW5.1 Q50584.1 B2RHG1.1 Q5NFL7.1 P9WQN7.1 P9WHH3.1 O84639.1 Q5NF24.1 P9WJH1.1 P9WJH5.1 O53203.1 P55969.1 O50418.1 Q5NGE0.1 H7C7K8.1 O54584.1 G1UB30.1 Q5NH85.1 G1UB25.1 P0A3N8.1 E1X6Y5.1 Q5NEP7.1 Q8YHH0.1 P38006.1 P43838.1 P43839.1 P0CL67.1 P0CL66.1 Q0SLZ0.1 Q07337.1 G5IXI6.1 O07721.1 O53254.1 P75330.1 I6Y936.1 L7N649.1 L7N656.1 L7N693.1 Q79FK4.1 Q79FR3.1 Q79FR5.1 Q79G04.1 Q79FS8.1 Q6MWX1.1 Q79FV6.1 Q79FS5.1 Q79FQ7.1 Q79FP3.1 Q79FP2.1 Q79FK9.1 Q79FE6.1 I6XEF1.1 Q79FD4.1 Q6MX26.1 Q6MX50.1 L7N680.1 O53695.1 I6X8R2.1 O53246.1 I6Y0L1.1 Q2G282.1 P14283.1 P04977.1 P9WMX7.1 P9WFR1.1 P9WN09.1 O86345.1 P9WGU1.1 P9WGT9.1 P9WGT7.1 P9WPF7.1 P9WIB3.1 P9WMM9.1 P9WHM5.1 P9WQE9.1 Q8DQ08.1 Q8DQ07.1 I6Y231.1 P9WHV9.1 O05877.1 O07236.1 O86370.1 O06404.1 O06410.1 B8ZRL2.1 O06807.1 O33269.1 Q79FA9.1 Q79FK6.1 Q8VKN2.1 L7N675.1 Q79FK5.1 L0T7Y7.1 Q79FI9.1 Q79FE1.1 Q6MWX9.1 O84616.1 O84647.1 P9WQ27.1 O84288.1 I6X9S5.1 P9WJW3.1 P9WPS9.1 P95149.1 O53632.1 I6Y293.1 L0T243.1 P9WP43.1 P9WKC9.1 P96402.1 P71810.1 O06417.1 P96365.1 L0T532.1 P96264.1 P9WJK5.1 P9WJQ9.1 O84419.1 O84818.1 Q8YG32.1 O06608.1 O07175.1 P9WGA3.1 O53323.1 P96354.1 P9WIM9.1 B8ZRT2.1 P9WK93.1 P13423.1 O84583.1 P9WG63.1 P9WIM1.1 P9WKJ3.1 P9WNZ7.1 P9WK31.1 Q50701.1 P9WID3.1 Q8YC41.1 P9WPL3.1 P9WNI3.1 P9WNI7.1 P9WNI5.1 P9WQ49.1 P9WMG1.1 Q2GGR3.1 P9WK71.1 O33192.1 P9WND5.1 P9WFL9.1 P9WMB7.1 P9WJ79.1 P9WND7.1 Q63RA7.1 Q631D0.1 I6YET7.1 Q9S010.1 P9WGC9.1 Q50700.1 Q5NFR6.1 P9WGK3.1 P9WHI1.1 P9WHV3.1 Q5NIA7.1 P9WG27.1 P9WF73.1 P9WGA1.1 P9WIB9.1 P9WGL3.1 O51381.1 P9WI83.1 P9WI79.1 P9WFT7.1 Q8YGS6.1 P05788.1 P17835.1 P9WIK9.1 Q5NHP7.1 P9WJU5.1 P9WGE7.1 Q2G2B2.1 P04958.1 P9WG67.1 P9WKE1.1 O07226.1 P9WJ13.1 P9WHF3.1 P9WF43.1 Q7D7L0.1 P9WMF9.1 P9WGN1.1 P9WKJ9.1 P60230.1 P9WKH7.1 O53699.1 P9WHT7.1 P9WJS5.1 Q5NII0.1 Q8YDZ3.1 Q9RPX7.1 P9WN67.1 O05576.1 Q5NHL4.1 P9WN15.1 P9WMD5.1 P9WMF5.1 P9WG85.1 P9WJW7.1 P9WIH1.1 P9WIG1.1 P9WIG3.1 P9WIF5.1 P9WIF1.1 P9WIE7.1 P9WHW9.1 P9WI41.1 P9WI39.1 P9WI37.1 P9WI25.1 Q11031.1 P9WI47.1 P9WI23.1 P9WI19.1 P9WI11.1 P9WI45.1 P9WI07.1 P9WI05.1 Q79FH3.1 P9WI43.1 P9WHZ7.1 P9WHZ5.1 P9WHZ3.1 P9WHY9.1 P9WHY7.1 P9WHY5.1 Q6MX07.1 P9WHY3.1 Q6MWY2.1 Q50703.1 P9WHX3.1 P96221.1 Q7D589.1 P9WMA3.1 P9WKW1.1 P9WKS9.1 P9WM29.1 P9WGC1.1 P9WLZ5.1 P9WLZ3.1 P9WLX1.1 P9WLV9.1 P9WLS7.1 P9WLQ1.1 P9WLJ1.1 P9WLH9.1 P9WLF3.1 P9WL97.1 P9WL87.1 P9WL85.1 P9WL83.1 P9WL67.1 P9WL63.1 P9WL51.1 P9WL47.1 P9WNH3.1 P9WGL7.1 P9WQM5.1 P9WPD9.1 A0A098A1N7.1 A0A098A2B0.1 A2RGM0.1 A5LVF6.1 A5MKZ9.1 B8ZQI8.1 B8ZQM3.1 B8ZQT5.1 B8ZR82.1 B8ZRH1.1 B8ZS71.1 B8ZS85.1 B8ZS86.1 B8ZSJ5.1 B8ZSL3.1 B8ZSL7.1 B8ZSM6.1 B8ZT30.1 B8ZTD0.1 B8ZTS2.1 B8ZTV5.1 B8ZU53.1 B8ZUA4.1 B8ZUE5.1 B8ZUF0.1 B8ZUT6.1 B8ZUX6.1 C0R9U8.1 C6DPT8.1 C6DQ35.1 E1XJN6.1 G8W6L3.1 G8W6L7.1 G8W6U7.1 H6MNY3.1 H6MQD5.1 H8HRN0.1 H8HW90.1 H8L8K3.1 I6TQ53.1 I6TX52.1 P0C5B9.1 Q1BYS7.1 R4MDK6.1 S5F815.1 W6GWM1.1 P9WFC9.1 P9WFJ9.1 P14916.1 P69996.1 P9WFC5.1 Q8VKQ6.1 P9WHS3.1 A5MKI6.1

TABLE 5 LIST OF ACCESSION NUMBERS FOR FUNGAL ANTIGENS FROM IEDB and UNIPROT Q5ANA3.1 Q5A3P6.1 Q59VM7.1 Q5A1A9.1 Q5APF0.1 Q8J0P4.1 Q4WHG0.1 Q4WQ87.1 Q59X67.1 Q59Z17.1 Q59ZI3.1 Q5AA33.1 B8N4Q9.1 Q4WAW6.1 Q4WAJ6.1 Q4X1V0.1 A0A1D8PQ86.1 Q59ZB1.1 Q873N2.1 Q59L72.1 B8NIF0.1 P46075.1 Q4WCL1.1 Q4WRP2.1 Q59L12.1 Q59LC9.1 P48989.1 Q5AFC2.1 B8N406.1 Q4WGL5.1 Q9HEQ8.1 Q4WVI6.1 P46593.1 P82611.1 Q5ADV5.1 Q59SG9.1 P41750.1 O00092.1 Q4WEN1.1 Q4WCV3.1 P0DJ06.1 O94038.1 Q59WD3.1 Q59RQ0.1 B8NM71.1 Q4WLW8.1 Q4WI37.1 Q4WNI1.1 P29717.1 P46589.1 Q59W04.1 Q59RK9.1 B8MYS6.1 Q8X176.1 Q4WZS1.1 Q4WQH4.1 Q9UW14.1 Q5AF56.1 Q59VN0.1 P31353.1 B8N8Q9.1 Q96UX3.1 Q4WDA4.1 Q4WDE1.1 Q92207.1 P83773.1 Q59WB9.1 Q5ACM4.1 B8N8R3.1 Q4WPF5.1 Q4WLS7.1 Q4WJT7.1 Q5A8T7.1 Q59YU1.1 Q59P53.1 Q5ACI8.1 B8N417.1 Q92450.1 Q4WWM6.1 Q4WLG1.1 Q5A8T4.1 Q59YV2.1 Q5A432.1 Q5AB93.1 B8N8R0.1 Q4WAW9.1 Q4WP81.1 Q4WQR6.1 P43076.1 Q5ABE5.1 Q5AK64.1 Q5ALL8.1 B8NM74.1 A4GYZ0.1 Q6MYT0.1 Q4WZS2.1 Q5AP53.1 Q59LF2.1 A0A1D8PNZ7.1 Q5A4X8.1 B8N106.1 Q4WAW3.1 Q4WTL0.1 Q4WXP0.1 Q5AL52.1 Q8NJN3.1 Q59Q30.1 Q5AD34.1 B8NHY4.1 Q70J59.1 Q4WXV2.1 Q4WU59.1 P43079.1 Q5ALN1.1 A0A1D8PN12.1 Q59V02.1 B8NJG8.1 Q4X1A4.1 Q4X0Z3.1 Q4WUG4.1 Q5AD07.1 Q59S72.1 Q5AK24.1 Q5AHC0.1 B8NM66.1 E9R876.1 Q4WN25.1 Q4WIK9.1 Q5A0E5.1 Q59K86.1 Q5AFT2.1 Q59Y11.1 B8MYL0.1 M4VQY9.1 Q4WN21.1 Q4WYP0.1 Q5AKU6.1 Q5AGD1.1 Q5A0W6.1 Q59QA5.1 B8NM62.1 Q4WF53.1 Q4X1N0.1 Q4X0B5.1 Q59RL7.1 P79023.1 P0CB63.1 Q5AMJ5.1 B8NGT5.1 Q4WZ64.1 Q4WQV2.1 Q4WYK9.1 G1UB61.1 Q59LP6.1 Q59U11.1 Q5AMF7.1 B8NM64.1 Q4WAZ0.1 Q4WZP2.1 Q4WY33.1 Q5ABC6.1 Q5AP87.1 P83775.1 Q5ABW2.1 B8NV37.1 Q4WR16.1 Q4WVK2.1 Q4X1F8.1 A0A1D8PQB9.1 P22274.1 Q5APF2.1 Q5APJ9.1 B8N151.1 Q4WLB9.1 Q4WUA0.1 Q4WA45.1 P87020.1 Q5AC48.1 Q59VP2.1 Q5AM72.1 B8NEJ3.1 Q4WQS0.1 A4DA84.1 Q4WKD7.1 P0CY27.1 Q5AP59.1 Q5AEE1.1 Q5ACU3.1 B8N8M2.1 Q4WEP7.1 Q4WJX0.1 Q4WCH5.1 Q59XX2.1 Q59MV1.1 Q5AMR5.1 Q5A1V3.1 B8MYV0.1 E9R9Y3.1 Q4WP38.1 Q4WXY3.1 Q59U10.1 Q5AL27.1 Q59SU5.1 Q59RF7.1 B8N7I7.1 P41748.1 Q4X1D7.1 Q4WPL7.1 Q59RW5.1 Q5AJD2.1 Q59VP1.1 Q5ACN3.1 B8NJG3.1 Q4WYG3.1 Q4W9Z9.1 Q4X136.1 Q59MQ0.1 P0CU38.1 Q5ADQ0.1 Q5AHE8.1 B8N8R1.1 P87184.1 Q4WE62.1 Q4WZ44.1 Q5ABU7.1 Q59QC5.1 Q5AK59.1 Q5AHA4.1 B8NJH2.1 Q4WBS1.1 Q4WZL3.1 Q4WTC7.1 Q9Y7F0.1 Q5A5N6.1 Q59RH5.1 Q5AEG7.1 B8NQ51.1 Q70DX9.1 Q4WB37.1 Q4WMK2.1 Q5AC08.1 Q59Q79.1 Q5ACW8.1 Q59V01.1 B8NM63.1 Q4WG16.1 Q4W9Z4.1 Q4WNC9.1 P30575.1 Q5AH38.1 Q5AGM0.1 Q5AK97.1 B8NM73.1 Q96X30.1 Q4WDD0.1 Q4WY67.1 Q5AAG6.1 Q5AMN3.1 Q59VN2.1 Q5A1B2.1 B8NYX0.1 Q4WV19.1 Q4WKB9.1 Q4WU12.1 O74189.1 Q5A1Z5.1 O94069.1 Q5AJK6.1 B8N3P7.1 Q4WAZ6.1 Q4WU07.1 Q4WA61.1 Q59W62.1 Q5A6K2.1 P0CY20.1 Q59L96.1 B8NJH1.1 Q4W944.1 Q4WBL6.1 Q4WA58.1 P0CY34.1 Q59L25.1 Q59XQ1.1 Q59MD0.1 B8MXJ7.1 Q4WTV7.1 Q4WX13.1 Q4WA60.1 Q5A1D3.1 Q5A922.1 O94048.1 Q5AG46.1 B8NJB0.1 Q4WMJ9.1 Q4WV71.1 Q4WX36.1 Q5AJU7.1 Q5AFG1.1 Q5ADX2.1 Q59VW6.1 B8NPS7.1 Q4WZ65.1 Q4X0C2.1 Q4WA62.1 Q5A4H5.1 Q5ALR8.1 P46586.1 Q5A8I6.1 B8N7Z8.1 A0A067Z9B6.1 Q4WRU4.1 Q4WA59.1 Q59Y31.1 Q5AEI2.1 P83776.1 Q9UW24.1 B8NSV5.1 Q66WM4.1 Q4WGS4.1 Q4WXQ7.1 P0CY29.1 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Q5A0M4.1 Q5A7P3.1 Q9B8D6.1 Q59MN0.1 E9QYP0.1 Q4WYE5.1 Q4WVK2.1 Q4WJU8.1 Q59PF9.1 Q5A6K8.1 Q9B8D0.1 Q59WH7.1 Q4WS76.1 Q4WZ01.1 Q4WUA0.1 Q4WBT4.1 Q5AFP3.1 Q5AD13.1 Q5A2K0.1 Q96WL3.1 Q4WMJ7.1 Q4W930.1 A4DA84.1 Q4WZV6.1 Q5AEK8.1 Q04782.1 Q5A1Q5.1 Q59ZX6.1 P28296.1 Q4WBR0.1 Q4WJX0.1 Q4WUV9.1 Q5AFK0.1 Q5A0J9.1 Q5AEM5.1 Q59MU1.1 E9RAH5.1 Q4WHD1.1 Q4WP38.1 Q4WLV2.1 Q5APD4.1 Q59ZZ6.1 Q5AK25.1 Q5A0J0.1 Q4WW81.1 Q4WTB3.1 Q4X1D7.1 Q4WFS2.1 Q5ADQ9.1 Q5AH25.1 Q5AK10.1 Q59WK2.1 Q50EL0.1 Q4WRV9.1 Q4W9Z9.1 Q4WBM1.1 P83779.1 Q59XM1.1 Q5AI15.1 P43073.1 Q4WY82.1 Q4X267.1 Q4WE62.1 Q4WAU7.1 Q5AAH2.1 Q59NN8.1 Q5AEM8.1 P87220.1 Q4WSF6.1 Q4WVZ3.1 Q4WZL3.1 Q4WZS3.1 O74254.1 Q5AP65.1 Q5A4J4.1 Q5ABD9.1 E9RCK4.1 Q4WR24.1 Q4WB37.1 Q4WPU9.1 Q5AL49.1 Q5AFF7.1 Q59YK4.1 P83781.1 Q4WZA8.1 Q4WPM8.1 Q4W9Z4.1 Q4WVZ0.1 P53697.1 Q59VR3.1 Q59WV0.1 Q5ANB1.1 Q4WAW7.1 Q4WE86.1 Q4WDD0.1 Q4WCX9.1 Q5ACL7.1 Q5AFH3.1 Q5AHB1.1 Q5A0E2.1 Q92405.1 A4DA70.1 Q4WKB9.1 Q4WJ38.1 Q5AEM6.1 P83780.1 Q5APK0.1 Q5AMG5.1 Q4WRY5.1 Q4WW45.1 Q4WU07.1 Q4WRC2.1 Q81G40.1 Q5A4G9.1 Q59PW0.1 Q5A6T8.1 Q7Z7W6.1 Q4WVG2.1 Q4WBL6.1 Q4WWW5.1 Q59X38.1 Q59NQ9.1 O74711.1 Q59WG5.1 Q4WZ67.1 Q4WQG9.1 Q4WX13.1 Q4WC84.1 Q59VQ3.1 A0A1D8PNP3.1 Q5ADN9.1 Q5AI80.1 Q4WZB3.1 Q4WQN1.1 Q4WV71.1 Q4WTW3.1 Q5A7Q2.1 Q5A9Z1.1 Q5ACP5.1 Q5AB49.1 Q4WLN1.1 Q4WCF1.1 Q4X0C2.1 Q4WFV6.1 Q5AJV5.1 A0A1D8PK89.1 Q5A1E1.1 Q59R32.1 Q4WR82.1 Q4WZC3.1 Q4WRU4.1 Q4WKD9.1 Q5A3Z6.1 Q59WB3.1 Q59L86.1 Q5A061.1 O14434.1 Q4WYX7.1 Q4WGS4.1 Q4WP10.1 Q5A201.1 Q59ZC8.1 Q5AD23.1 Q59P50.1 Q4WMK0.1 Q4X0A5.1 Q4WP13.1 C5JZM2.1 O93827.1 Q5A1L6.1 Q5A5U6.1 Q59WC6.1 Q4WPX2.1 Q4WUD3.1 Q4WHG5.1 P0DJ06.1 Q5AAI8.1 A0A1D8PN14.1 Q5ADQ7.1 Q5AI48.1 O43099.1 Q4WS49.1 Q4WPF7.1 P46598.1 Q5A2J7.1 Q5A8X7.1 Q59WJ4.1 Q59ZU1.1 Q4WJ81.1 Q4WCX7.1 Q4WH83.1 P87020.1 P22011.1 Q59X39.1 Q5AGV7.1 Q5AG56.1 P67875.1 Q4WXX5.1 Q4WXW1.1 P38110.1 Q9HGT6.1 Q5ACW6.1 Q59NR8.1 Q59T36.1 Q4WZB4.1 Q4WNB5.1 Q8NJM2.1 C1GK29.1 Q9UW26.1 P0CB54.1 Q5A5K7.1 Q9P840.1 E9QUT3.1 O42799.1 Q4WWD3.1 Q59LX5.1 A0A1D8PN88.1 Q5A210.1 Q5AHB8.1 Q4WAZ9.1 Q4WHA3.1 Q4WPU8.1 Q59P10.1 A0A1D8PMB1.1 Q59N10.1 Q5AKU3.1 Q4WZ70.1 Q4W9M3.1 Q4WN99.1 Q3MNT0.1 Q5ABR2.1 Q5A1B3.1 Q59ZW4.1 E9RBR0.1 Q4WVH5.1 P0C959.1

Model Population

The method may comprise the step of selecting or defining a model human population. A suitable model population is one that is relevant to the human population or a subpopulation in which it is intended to use the peptides designed or prepared by the method to induce a T cell response. This may be referred to as the target population or the intent-to-treat population. The peptides or the encoded peptides designed or produced by the method are for use in a method of inducing a T cell response against the target polypeptide in a subject of the intent-to-treat population. A relevant population is one that is representative or similar to the intent-to-treat population. In some cases the model population is representative for the whole human race. In other cases the model population may be a disease- and/or subject-matched population (subpopulation), for example a subpopulation matched to the intent-to-treat population by ethnicity, geographical location, gender, age, disease or cancer, disease or cancer type or stage, genotype, and/or expression of one or more biomarkers (for example, women having the BRCA mutation for a breast cancer vaccine), and/or partially by HLA genotype (for example subjects have one or more particular HLA alleles). In some cases the intent-to-treat population may be subjects having cancer or a type of cancer, such as any described herein. For example, the model population may have HLA class I and/or class II genomes that are representative of those found in the world population, or a subject and/or disease matched subpopulation. In some cases the model population is representative for at least 70%, or 75% or 80% or 84% or 85% or 86% or 90% or 95% of the intent-to-treat population by HLA diversity and/or HLA frequency. In some cases the model population may comprise at least 100, or 200 or 300 or 400 or 500 or 1000 or 5000 or 10000 or 15000 subjects.

Each subject in the model population is minimally defined by their HLA class I or class II genotype, e.g. complete 4-digit HLA class I genotype. Data concerning the HLA genotype of the model population may be stored or recorded in or retrieved from a database or be an in silico model human population.

HLA-Binding Criteria

The method comprises the step of identifying, for each subject of the model population, amino acid sequences within the target polypeptide that meet certain HLA-binding criteria, such as comprising a T cell epitope that can bind to multiple HLA class I and/or class II HLA molecules as described herein. For example, amino acid sequences that comprise a T cell epitope that is capable of binding to at least three HLA class I alleles of a subject and/or a T cell epitope that is capable of binding to at least three or four HLA class II alleles of the subject are optimal for inducing CD4+ T cell and/or CD8+ T cell responses. In some cases the HLA class I-binding T cell epitope and the HLC class II binding T cell epitope may overlap. In some cases the HLA class I binding T cell epitope may be fully embedded in the sequence of the HLA class II binding T cell epitope. In some cases the multiple HLA class I and class II binding epitopes are within a minimum distance on one another, such as both within a 50, or 45, or 40, or 35, or 30, or 25 amino acid fragment of the target polypeptide.

The method comprises selecting a polypeptide fragment window length. The polypeptide fragment window length defines the fragment length across the target polypeptide used to identify hotspots where the maximum number of subjects in the model population have an amino acid sequence that meets the HLA-binding criteria. The polypeptide fragment window length may be from 9 to 50 amino acids long.

Peptides that comprise a hotspot sequence as identified by the method described herein may be particularly useful for inducing T cell responses in a high proportion of the subjects of the intent-to-treat population. Peptides comprising such sequences may accordingly be designed or prepared according to the present disclosure and used in methods of treatment.

The peptide may consist of the amino acid sequence of the hotspot fragment of the target polypeptide or may comprise the sequence of a longer fragment of the target polypeptide of which the hotpot sequence is a part. In some cases the target polypeptide fragment may be flanked at the N and/or C terminus of the peptide by additional amino acids that are not part of the consecutive sequence of the target polypeptide antigen. In some cases the fragment may be flanked by up to 30 or 25 or 20 or 15 or 10, or 9 or 8 or 7 or 6 or 5 or 4 or 3 or 2 or 1 additional amino acid at the N and/or C terminus.

In some cases the method of the disclosure may be repeated in an iterative process to identify further fragments of the target polypeptide antigen that meet the HLA-binding criteria in subjects of the model population. In some case the method may be repeated in up to 50, 45, 40, 35, 30, 25, 20, 19, 18, 17, 16, 15, 14, 13, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2 or 1 cycles of the method described herein.

In some cases, the object of the iterative process may be to identify the minimum number of peptides or hotspots that will induce the desired T cell responses (cytotoxic T cell response and/or helper T cell response) in the maximum number of subjects in the model or intent-to-treat population. In this case it is desirable to remove from the model population those subjects for whom the hotspots or peptides selected in any previous rounds already meet the desired criteria before repeating the method in a further cycle. The iterative method may in some cases be continued until either no more sequences meeting the HLA-binding criteria can be identified or a pre-defined number of cycles, number of hotspots, or pre-defined minimal coverage of the model or intent-to-treat population is reached.

In some cases further predefined criteria may be applied to the hotspot selection process. If a particular hotspot sequence does not meet such additional criteria then the hotspot may be disregarded and another amino acid sequence of the selected window length and meeting the HLA-binding criteria for the next highest number of subjects in the model population may be selected, until a sequence is reached that meets the additional predefined criteria. In an iterative process, the subjects of the model population for which the selected sequence meets all of the HLA-binding criteria and other criteria should be removed from the model population before proceeding to the next cycle.

In one example, the additional predefined criteria may relate to features of the peptide sequence that influence manufacturing feasibility. For example, in some cases a peptide/hotspot sequence may be rejected in it comprises a particular amino acid residue, such as a cysteine, or a particular amino acid motif, or if the peptide/hotspot sequence has less than a minimum level of hydrophilicity.

The method of the disclosure may be used to provide peptides that are useful for inducing T cell responses against a given polypeptide, or to provide an ideal set of peptides from which to select a peptide for inducing T cell responses against one or more given polypeptides in a specific subject of a given human population.

In other cases the method may be repeated for a set of polypeptides, for example a set of polypeptides that are associated with the same disease or condition, such as polypeptides that are expressed by the same pathogen or type of pathogen, or associated with the same cancer or type of cancer, such as those disclosed herein. The method may then provide an ideal set of peptides from which to select peptides to treat the disease or condition in a specific subject of a given human population.

Panels of Peptides

In some cases the disclosure provides a panel of peptides or a panel of polynucleic acids or vectors encoding a panel of peptides. The panel may be suitable for use in a method of inducing a T cell response against one or more target polypeptides in a subject of an intent-to-treat human population. The intent-to-treat human population may be a population as described herein and may be defined by the HLA genotype distribution in the subjects of the intent-to-treat population as described herein.

In some cases the panel is a panel designed and/or prepared according to the methods described herein. In other cases the panel comprises or encodes two or more peptides designed and/or prepared according to the method described herein.

In other cases the panel comprises or encodes two or more peptides, wherein each peptide comprises a fragment of the one or more target polypeptide, wherein the fragment comprises, in a high proportion of the intent-to-treat population, a sequence that meets any of the HLA-binding criteria described herein. In some cases a “high” percentage may be at least or more than 1%, 2%, 5%, 10%, 12%, 15%, 16%, 17%, 18%, 19%, 20%, 21%, 22%, 23%, 24%, 25%, 26%, 27%, 28%, 29%, 30%, 31%, 32%, 33%, 34%, 35%, 36%, 37%, 38%, 39%, 40%, 41%, 42%, 43%, 44%, 45%, 46%, 47%, 48%, 49% or 50% of an intent-to-treat population as described herein.

The peptides of the panel may have any of the characteristics of a peptide described herein. For example, each peptide may be 9-50 amino acids in length; may comprise a fragment of the one or more target polypeptides that is 9-50 amino acids in length and meets the HLA-binding requirements; the target polypeptide fragment may be flanked at the N and/or C terminus of the peptide by additional amino acids that are not part of the consecutive sequence of the target polypeptide antigen; and/or the target polypeptide(s) may be any described herein, for example any of those listed in Tables 2 to 5.

In some cases the target polypeptide of each peptide of the panel may be the same; i.e each peptide comprises a different fragment of the target polypeptide, each of which meets the HLA-binding requirements in a high proportion of the intent-to-treat population. The panel then represents a selection of peptides that may be used to induce T cell responses against the same target polypeptide in different HLA-matched subjects. In some cases the fragments of the target polypeptide in the peptides of the panel do not overlap or do not comprise any common T cell epitopes or PEPIs.

In other cases the panel may comprise peptides that are designed to induce T cell responses against different target polypeptides, that is the selected fragments of the target polypeptides comprised in the peptides are from different target polypeptides. In some cases the panel comprises such fragments from at least 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39 or 40 different target polypeptides.

The different target polypeptides may be any different polypeptides that it is useful to target or that can be selectively targeted with different PEPIs as described herein. In some cases different target polypeptide antigens are non-homologues or non-paralogues or have less than 95%, or 90%, or 85% or 80% or 75% or 70% or 60% or 50% sequence identity across the full length of each polypeptide.

In some cases the different target polypeptides targeted by the peptides of a panel are each expressed by or associated with the same disease, condition, pathogen or cancer, such as any described herein. Such a panel of peptides may be ideal for use in treatment of the disease or condition in a subject in need thereof, particularly if the peptides are HLA/PEPI matched to the specific subject as described herein.

In some cases one or more or each of the target polypeptides is present in a sample taken from a human subject. This indicates that the polypeptide(s) are expressed in the subject, for example a cancer- or tumor-associated antigen, TSA or CTA expressed by cancer cells of the subject.

In some cases 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or 25 or more or each of the target polypeptide antigens is a TSA and/or a CTA.

Selection of Polypeptides and Patients

The peptides described herein may be used to induce T cell responses or provide vaccination or immunotherapy in a subject in need therefore. More than one peptide will typically be selected for treatment of a subject. Each peptide may be selected for treatment of a subject based on (i) the disease or condition to be treated in the subject; and/or (ii) the HLA genotype of the subject.

Each peptide selected for treatment of a subject may comprise a fragment as described herein of a target polypeptide antigen that is associated with the disease or condition to be treated in the subject, or expressed by target cells of the treatment, such as cancer cells. The disease or condition and the target polypeptide antigens may be any described herein. Typically each peptide selected for treatment of the subject will comprise a fragment as described herein of a different target polypeptide antigen. The target polypeptide antigens may be selected because they are known to be expressed by target cells in the subject. For example the target polypeptide antigens may have been detected in a sample obtained from the subject, such as a tumor biopsy. In other cases, the target polypeptide antigens may be selected based on their expression rate in the cells that are targeted by the treatment, for example the expression rate of a particular TAA in cancer or a particular type of cancer, such as any described herein. Typically the peptides selected for the treatment of the subject are those that comprise a fragment as described herein of the polypeptide antigens associated with the condition at the highest expression rates for the condition to be treated. Further the fragments typically have been predicted to induce a T cell response in the specific subject, as further described herein.

Polypeptide antigens, and particularly short peptides derived from polypeptide antigens, that are commonly used in vaccination and immunotherapy, induce immune responses in only a fraction of human subjects. The peptides of the present disclosure are specifically selected to induce immune responses in a high proportion of the general population, or a high proportion of a given intent-to-treat population. However, but they may not be effective in all individuals or all subjects of the intent-to-treat population due to HLA genotype heterogeneity.

In some cases the present disclosure provides a method of predicting that a specific human subject will have a T cell response (cytotoxic and/or helper) to administration of any of the peptides, panels of peptides or pharmaceutical compositions or kits described herein. As provided herein T cell epitope presentation by multiple HLAs of an individual is generally needed to trigger a T cell response. The best predictor of a cytotoxic (CD8+) T cell response to a given polypeptide is the presence of at least one T cell epitope that is presented by at least three HLA class I alleles of a subject (≥1 PEPI3+). Similarly the presence of at least one T cell epitope that is presented by at least three or four HLA class II alleles of a subject may be predictive of a helper (CD4+) T cell response. If such T cell epitopes correspond to a fragment of a target polypeptide antigen, such as any target polypeptide antigen described herein, then the subject is predicted to mount a T cell response that targets cells in the subject that express the target polypeptide, if present. Accordingly in some cases the method may be for predicting a T cell response in a subject to a target polypeptide antigen, such as any described herein.

The inventors have further discovered that the presence in a vaccine or immunotherapy composition of at least two T cell epitopes that (i) correspond to fragments of one or more target polypeptide antigens, and (ii) can bind to at least three HLA class I alleles of an individual is predictive for a clinical response. For example, if an individual has a total of ≥2 PEPI3+ within the active ingredient peptide(s) of a vaccine or immunotherapy composition, and these PEPI3+s are derived from polypeptide antigens that are in fact expressed by target cells in the individual (for example, target tumor cells of the individual express the target tumor-associated antigens), then the individual is a likely clinical responder (i.e. a clinically relevant immune responder).

A “clinical response” or “clinical benefit” as used herein may be the prevention or a delay in the onset of a disease or condition, the amelioration of one or more symptoms, the induction or prolonging of remission, or the delay of a relapse or recurrence or deterioration, or any other improvement or stabilisation in the disease status of a subject. Where appropriate, a “clinical response” may correlate to “disease control” or an “objective response” as defined by the Response Evaluation Criteria In Solid Tumors (RECIST) guidelines.

Accordingly some aspects of the disclosure relate to a method of predicting that a specific human subject will have a clinical response to a method of treatment as described herein or to administration of a pharmaceutical composition or the peptides, nucleic acids or vectors of a pharmaceutical kit described herein.

In some cases the method comprises determining that the active ingredient peptide(s) for treatment of the subject comprise two or more different amino acid sequences each of which is a) a fragment of a target polypeptide antigen expressed by target cells of the subject (for example, polypeptide antigens that have been detected in a biopsy); and b) a T cell epitope capable of binding to at least three HLA class I of the subject.

In some cases the likelihood that a subject will have a clinical response to a peptide vaccine or immunotherapy composition, such as those described herein, can be determined without knowing whether the target antigens are expressed in target cells, such as cancer cells of the subject and/or without determining the HLA class I genotype of the subject. Known antigen expression frequencies in the disease (e.g. MAGE-A3 in a tumor type like gastric cancer) and/or known frequencies for HLA class I and class II genotype of subjects in the target population (e.g ethnic population, general population, diseased population) may be used instead.

The likelihood that a subject will respond to treatment is increased by (i) the presence of more multiple HLA-binding PEPIs in the active ingredient polypeptides; (ii) the presence of PEPIs in more target polypeptide antigens; and (iii) expression of the target polypeptide antigens in the subject or in diseased cells of the subject. The probability that target cells in the subject (over-)express a specific or any combination of target polypeptide antigens may be determined using population expression frequency data (expression rates), e.g. probability of expression of an antigen in gastric cancer. The population expression frequency data may relate to a subject- and/or disease-matched population or the intent-to-treat population. For example, the frequency or probability of expression of a particular cancer-associated antigen in a particular cancer or subject having a particular cancer, for example breast cancer, can be determined by detecting the antigen in tumor, e.g. breast cancer tumor samples. Such expression frequencies may be determined from published figures and scientific publications. In some cases a method of the disclosure may comprise a step of determining the expression frequency of a relevant target polypeptide antigen in a relevant population.

Disclosed is a range of pharmacodynamic biomarkers to predict the activity/effect of vaccines in individual human subjects as well as in populations of human subjects. These biomarkers expedite more effective vaccine development and also decrease the development cost and may be used to assess and compare different compositions. Exemplary biomarkers are as follows.

-   -   AG95—potency of a vaccine: The number of antigens in a cancer         vaccine that a specific tumor type expresses with 95%         probability. AG95 is an indicator of the vaccine's potency, and         is independent of the immunogenicity of the vaccine antigens.         AG95 is calculated from the tumor antigen expression rate data.         Such data may be obtained from experiments published in peer         reviewed scientific journals. Technically, AG95 is determined         from the binomial distribution of antigens in the vaccine, and         takes into account all possible variations and expression rates.     -   PEPI3+ count—immunogenicity of a vaccine in a subject:         Vaccine-derived PEPI3+ are personal epitopes that bind to at         least 3 HLAs of a subject and induce T cell responses. PEPI3+         can be determined using the PEPI3+ Test in subjects who's         complete 4-digit HLA genotype is known.     -   AP count—antigenicity of a vaccine in a subject: Number of         vaccine antigens with PEPI3+. Vaccines contain sequences from         target polypeptide antigens expressed by diseased cells. AP         count is the number of antigens in the vaccine that contain         PEPI3+, and the AP count represents the number of antigens in         the vaccine that can induce T cell responses in a subject. AP         count characterizes the vaccine-antigen specific T cell         responses of the subject since it depends only on the HLA         genotype of the subject and is independent of the subject's         disease, age, and medication. The correct value is between 0 (no         PEPI presented by the antigen) and maximum number of antigens         (all antigens present PEPIs).     -   AP50—antigenicity of a vaccine in a population: The mean number         of vaccine antigens with a PEPI in a population. The AP50 is         suitable for the characterization of vaccine-antigen specific T         cell responses in a given population since it depends on the HLA         genotype of subjects in a population.     -   AGP count—effectiveness of a vaccine in a subject: Number of         vaccine antigens expressed in the tumor with PEPI. The AGP count         indicates the number of tumor antigens that vaccine recognizes         and induces a T cell response against (hit the target). The AGP         count depends on the vaccine-antigen expression rate in the         subject's tumor and the HLA genotype of the subject. The correct         value is between 0 (no PEPI presented by expressed antigen) and         maximum number of antigens (all antigens are expressed and         present a PEPI).     -   AGP50—effectiveness of a cancer vaccine in a population: The         mean number of vaccine antigens expressed in the indicated tumor         with PEPI (i.e., AGP) in a population. The AGP50 indicates the         mean number of tumor antigens that the T cell responses induced         by the vaccine can recognize. AGP50 is dependent on the         expression rate of the antigens in the indicated tumor type and         the immunogenicity of the antigens in the target population.         AGP50 can estimate a vaccine's effectiveness in different         populations and can be used to compare different vaccines in the         same population. The computation of AGP50 is similar to that         used for AG50, except the expression is weighted by the         occurrence of the PEPI3+ in the subject on the expressed vaccine         antigens. In a theoretical population, where each subject has a         PEPI from each vaccine antigen, the AGP50 will be equal to AG50.         In another theoretical population, where no subject has a PEPI         from any vaccine antigen, the AGP50 will be 0. In general, the         following statement is valid: 0≤AGP50≤AG50.     -   mAGP—a candidate biomarker for the selection of likely         responders: Likelihood that a cancer vaccine induces T cell         responses against multiple antigens expressed in the indicated         tumor. mAGP is calculated from the expression rates of         vaccine-antigens in the tumor and the presence of vaccine         derived PEPIs in the subject. Technically, based on the AGP         distribution, the mAGP is the sum of probabilities of the         multiple AGP (≥2 AGPs).

The results of a prediction as set out above may be used to inform a physician's decisions concerning treatment of the subject. Accordingly, in some cases the method of the disclosure predicts that a subject will have or is likely to have a T cell response and/or a clinical response to a treatment as described herein, and the method further comprises selecting the treatment for the human subject. In some cases a subject is selected for treatment if their likelihood of a response targeted at a predefined number of target polypeptide antigens, optionally wherein the target polypeptide antigens are (predicted to be) expressed, is above a predetermined threshold. In some cases the number of target polypeptide antigens or epitopes is two. In some cases the number of target polypeptide antigens or epitopes is three, or four, or five, or six, or seven, or eight, or nine, or ten. The method may further comprise administering the treatment to the human subject. Alternatively, the method may predict that the subject will not have an immune response and/or a clinical response and further comprise selecting a different treatment for the subject.

Pharmaceutical Compositions, Methods of Treatment and Modes of Administration

In some aspects the disclosure relates to a pharmaceutical composition or kit comprising one or more of the peptides, polynucleic acids or vectors described herein. Such pharmaceutical compositions or kits may be for use in a method of inducing an immune response, treating, vaccinating or providing immunotherapy to a subject. The pharmaceutical composition or kit may be a vaccine or immunotherapy composition or kit. Such treatment may comprise administering the pharmaceutical composition or the peptides, polynucleic acids or vectors of the kit to the subject.

The pharmaceutical compositions or kits described herein may comprise, in addition to one or more peptides, nucleic acids or vectors, a pharmaceutically acceptable excipient, carrier, diluent, buffer, stabiliser, preservative, adjuvant or other materials well known to those skilled in the art. Such materials are preferably non-toxic and preferably do not interfere with the pharmaceutical activity of the active ingredient(s). The pharmaceutical carrier or diluent may be, for example, water containing solutions. The precise nature of the carrier or other material may depend on the route of administration, e.g. oral, intravenous, cutaneous or subcutaneous, nasal, intramuscular, intradermal, and intraperitoneal routes.

The pharmaceutical compositions of the disclosure may comprise one or more “pharmaceutically acceptable carriers”. These are typically large, slowly metabolized macromolecules such as proteins, saccharides, polylactic acids, polyglycolic acids, polymeric amino acids, amino acid copolymers, sucrose (Paoletti et al., 2001, Vaccine, 19:2118), trehalose (WO 00/56365), lactose and lipid aggregates (such as oil droplets or liposomes). Such carriers are well known to those of ordinary skill in the art. The pharmaceutical compositions may also contain diluents, such as water, saline, glycerol, etc. Additionally, auxiliary substances, such as wetting or emulsifying agents, pH buffering substances, and the like, may be present. Sterile pyrogen-free, phosphate buffered physiologic saline is a typical carrier (Gennaro, 2000, Remington: The Science and Practice of Pharmacy, 20th edition, ISBN:0683306472).

The pharmaceutical compositions of the disclosure may be lyophilized or in aqueous form, i.e. solutions or suspensions. Liquid formulations of this type allow the compositions to be administered direct from their packaged form, without the need for reconstitution in an aqueous medium, and are thus ideal for injection. The pharmaceutical compositions may be presented in vials, or they may be presented in ready filled syringes. The syringes may be supplied with or without needles. A syringe will include a single dose, whereas a vial may include a single dose or multiple doses.

Liquid formulations of the disclosure are also suitable for reconstituting other medicaments from a lyophilized form. Where a pharmaceutical composition is to be used for such extemporaneous reconstitution, the disclosure provides a kit, which may comprise two vials, or may comprise one ready-filled syringe and one vial, with the contents of the syringe being used to reconstitute the contents of the vial prior to injection.

The pharmaceutical compositions of the disclosure may include an antimicrobial, particularly when packaged in a multiple dose format. Antimicrobials may be used, such as 2-phenoxyethanol or parabens (methyl, ethyl, propyl parabens). Any preservative is preferably present at low levels. Preservative may be added exogenously and/or may be a component of the bulk antigens which are mixed to form the composition (e.g. present as a preservative in pertussis antigens).

The pharmaceutical compositions of the disclosure may comprise detergent e.g. Tween (polysorbate), DMSO (dimethyl sulfoxide), DMF (dimethylformamide). Detergents are generally present at low levels, e.g. <0.01%, but may also be used at higher levels, e.g. 0.01-50%.

The pharmaceutical compositions of the disclosure may include sodium salts (e.g. sodium chloride) and free phosphate ions in solution (e.g. by the use of a phosphate buffer).

In certain embodiments, the pharmaceutical composition may be encapsulated in a suitable vehicle either to deliver the peptides into antigen presenting cells or to increase the stability. As will be appreciated by a skilled artisan, a variety of vehicles are suitable for delivering a pharmaceutical composition of the disclosure. Non-limiting examples of suitable structured fluid delivery systems may include nanoparticles, liposomes, microemulsions, micelles, dendrimers and other phospholipid-containing systems. Methods of incorporating pharmaceutical compositions into delivery vehicles are known in the art.

In order to increase the immunogenicity of the composition, the pharmacological compositions may comprise one or more adjuvants and/or cytokines.

Suitable adjuvants include an aluminum salt such as aluminum hydroxide or aluminum phosphate, but may also be a salt of calcium, iron or zinc, or may be an insoluble suspension of acylated tyrosine, or acylated sugars, or may be cationically or anionically derivatised saccharides, polyphosphazenes, biodegradable microspheres, monophosphoryl lipid A (MPL), lipid A derivatives (e.g. of reduced toxicity), 3-O-deacylated MPL [3D-MPL], quil A, Saponin, QS21, Freund's Incomplete Adjuvant (Difco Laboratories, Detroit, Mich.), Merck Adjuvant 65 (Merck and Company, Inc., Rahway, N.J.), AS-2 (Smith-Kline Beecham, Philadelphia, Pa.), CpG oligonucleotides, bioadhesives and mucoadhesives, microparticles, liposomes, polyoxyethylene ether formulations, polyoxyethylene ester formulations, muramyl peptides or imidazoquinolone compounds (e.g. imiquamod and its homologues). Human immunomodulators suitable for use as adjuvants in the disclosure include cytokines such as interleukins (e.g. IL-1, IL-2, IL-4, IL-5, IL-6, IL-7, IL-12, etc), macrophage colony stimulating factor (M-CSF), tumour necrosis factor (TNF), granulocyte, macrophage colony stimulating factor (GM-CSF) may also be used as adjuvants.

In some embodiments, the compositions comprise an adjuvant selected from the group consisting of Montanide ISA-51 (Seppic, Inc., Fairfield, N.J., United States of America), QS-21 (Aquila Biopharmaceuticals, Inc., Lexington, Mass., United States of America), GM-CSF, cyclophosamide, bacillus Calmette-Guerin (BCG), Corynbacterium parvum, levamisole, azimezone, isoprinisone, dinitrochlorobenezene (DNCB), keyhole limpet hemocyanins (KLH), Freunds adjuvant (complete and incomplete), mineral gels, aluminum hydroxide (Alum), lysolecithin, pluronic polyols, polyanions, oil emulsions, dinitrophenol, diphtheria toxin (DT).

By way of example, the cytokine may be selected from the group consisting of a transforming growth factor (TGF) such as but not limited to TGF-α and TGF-β; insulin-like growth factor-I and/or insulin-like growth factor-II; erythropoietin (EPO); an osteoinductive factor; an interferon such as but not limited to interferon-α, -β, and -γ; a colony stimulating factor (CSF) such as but not limited to macrophage-CSF (M-CSF); granulocyte-macrophage-CSF (GM-CSF); and granulocyte-CSF (G-CSF). In some embodiments, the cytokine is selected from the group consisting of nerve growth factors such as NGF-β; platelet-growth factor; a transforming growth factor (TGF) such as but not limited to TGF-α, and TGF-β; insulin-like growth factor-I and insulin-like growth factor-II; erythropoietin (EPO); an osteoinductive factor; an interferon (IFN) such as but not limited to IFN-α, IFN-β, and IFN-γ; a colony stimulating factor (CSF) such as macrophage-CSF (M-CSF); granulocyte-macrophage-CSF (GM-CSF); and granulocyte-CSF (G-CSF); an interleukin (I1) such as but not limited to IL-1, IL-1.alpha., IL-2, IL-3, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-10, IL-11, IL-12; IL-13, IL-14, IL-15, IL-16, IL-17, IL-18; LIF; kit-ligand or FLT-3; angiostatin; thrombospondin; endostatin; a tumor necrosis factor (TNF); and LT.

It is expected that an adjuvant or cytokine can be added in an amount of about 0.01 mg to about 10 mg per dose, preferably in an amount of about 0.2 mg to about 5 mg per dose. Alternatively, the adjuvant or cytokine may be at a concentration of about 0.01 to 50%, preferably at a concentration of about 2% to 30%.

In certain aspects, the pharmaceutical compositions of the disclosure are prepared by physically mixing the adjuvant and/or cytokine with the PEPIs under appropriate sterile conditions in accordance with known techniques to produce the final product.

Examples of suitable compositions of polypeptide fragments and methods of administration are provided in Esseku and Adeyeye (2011) and Van den Mooter G. (2006). Vaccine and immunotherapy composition preparation is generally described in Vaccine Design (“The subunit and adjuvant approach” (eds Powell M. F. & Newman M. J. (1995) Plenum Press New York). Encapsulation within liposomes, which is also envisaged, is described by Fullerton, U.S. Pat. No. 4,235,877.

In some embodiments, the compositions disclosed herein are prepared as a nucleic acid vaccine. In some embodiments, the nucleic acid vaccine is a DNA vaccine. In some embodiments, DNA vaccines, or gene vaccines, comprise a plasmid with a promoter and appropriate transcription and translation control elements and a nucleic acid sequence encoding one or more polypeptides of the disclosure. In some embodiments, the plasmids also include sequences to enhance, for example, expression levels, intracellular targeting, or proteasomal processing. In some embodiments, DNA vaccines comprise a viral vector containing a nucleic acid sequence encoding one or more polypeptides of the disclosure. In additional aspects, the compositions disclosed herein comprise one or more nucleic acids encoding peptides determined to have immunoreactivity with a biological sample. For example, in some embodiments, the compositions comprise one or more nucleotide sequences encoding 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, or more peptides comprising a fragment that is a T cell epitope capable of binding to at least three HLA class I molecules and/or at least three or four HLA class II molecules of a patient. In some embodiments, the peptides are derived from an antigen that is expressed in cancer. In some embodiments the DNA or gene vaccine also encodes immunomodulatory molecules to manipulate the resulting immune responses, such as enhancing the potency of the vaccine, stimulating the immune system or reducing immunosuppression. Strategies for enhancing the immunogenicity of DNA or gene vaccines include encoding of xenogeneic versions of antigens, fusion of antigens to molecules that activate T cells or trigger associative recognition, priming with DNA vectors followed by boosting with viral vector, and utilization of immunomodulatory molecules. In some embodiments, the DNA vaccine is introduced by a needle, a gene gun, an aerosol injector, with patches, via microneedles, by abrasion, among other forms. In some forms the DNA vaccine is incorporated into liposomes or other forms of nanobodies. In some embodiments, the DNA vaccine includes a delivery system selected from the group consisting of a transfection agent; protamine; a protamine liposome; a polysaccharide particle; a cationic nanoemulsion; a cationic polymer; a cationic polymer liposome; a cationic nanoparticle; a cationic lipid and cholesterol nanoparticle; a cationic lipid, cholesterol, and PEG nanoparticle; a dendrimer nanoparticle. In some embodiments, the DNA vaccines are administered by inhalation or ingestion. In some embodiments, the DNA vaccine is introduced into the blood, the thymus, the pancreas, the skin, the muscle, a tumor, or other sites.

In some embodiments, the compositions disclosed herein are prepared as an RNA vaccine. In some embodiments, the RNA is non-replicating mRNA or virally derived, self-amplifying RNA. In some embodiments, the non-replicating mRNA encodes the peptides disclosed herein and contains 5′ and 3′ untranslated regions (UTRs). In some embodiments, the virally derived, self-amplifying RNA encodes not only the peptides disclosed herein but also the viral replication machinery that enables intracellular RNA amplification and abundant protein expression. In some embodiments, the RNA is directly introduced into the individual. In some embodiments, the RNA is chemically synthesized or transcribed in vitro. In some embodiments, the mRNA is produced from a linear DNA template using a T7, a T3, or an Sp6 phage RNA polymerase, and the resulting product contains an open reading frame that encodes the peptides disclosed herein, flanking UTRs, a 5′ cap, and a poly(A) tail. In some embodiments, various versions of 5′ caps are added during or after the transcription reaction using a vaccinia virus capping enzyme or by incorporating synthetic cap or anti-reverse cap analogues. In some embodiments, an optimal length of the poly(A) tail is added to mRNA either directly from the encoding DNA template or by using poly(A) polymerase. The RNA may encode one or more peptides comprising a fragment that is a T cell epitope capable of binding to at least three HLA class I and/or at least three or four HLA class II molecules of a patient. In some embodiments, the fragments are derived from an antigen that is expressed in cancer. In some embodiments, the RNA includes signals to enhance stability and translation. In some embodiments, the RNA also includes unnatural nucleotides to increase the half-life or modified nucleosides to change the immunostimulatory profile. In some embodiments, the RNAs is introduced by a needle, a gene gun, an aerosol injector, with patches, via microneedles, by abrasion, among other forms. In some forms the RNA vaccine is incorporated into liposomes or other forms of nanobodies that facilitate cellular uptake of RNA and protect it from degradation. In some embodiments, the RNA vaccine includes a delivery system selected from the group consisting of a transfection agent; protamine; a protamine liposome; a polysaccharide particle; a cationic nanoemulsion; a cationic polymer; a cationic polymer liposome; a cationic nanoparticle; a cationic lipid and cholesterol nanoparticle; a cationic lipid, cholesterol, and PEG nanoparticle; a dendrimer nanoparticle; and/or naked mRNA; naked mRNA with in vivo electroporation; protamine-complexed mRNA; mRNA associated with a positively charged oil-in-water cationic nanoemulsion; mRNA associated with a chemically modified dendrimer and complexed with polyethylene glycol (PEG)-lipid; protamine-complexed mRNA in a PEG-lipid nanoparticle; mRNA associated with a cationic polymer such as polyethylenimine (PEI); mRNA associated with a cationic polymer such as PEI and a lipid component; mRNA associated with a polysaccharide (for example, chitosan) particle or gel; mRNA in a cationic lipid nanoparticle (for example, 1,2-dioleoyloxy-3-trimethylammoniumpropane (DOTAP) or dioleoylphosphatidylethanolainine (DOPE) lipids); snRNA complexed with cationic lipids and cholesterol; or mRNA complexed with cationic lipids, cholesterol and PEG-lipid. In some embodiments, the RNA vaccine is administered by inhalation or ingestion. In some embodiments, the RNA is introduced into the blood, the thymus, the pancreas, the skin, the muscle, a tumor, or other sites, and/or by an intradermal, intramuscular, subcutaneous, intranasal, intranodal, intravenous, intrasplenic, intratumoral or other delivery route.

Polynucleotide or oligonucleotide components may be naked nucleotide sequences or be in combination with cationic lipids, polymers or targeting systems. They may be delivered by any available technique. For example, the polynucleotide or oligonucleotide may be introduced by needle injection, preferably intradermally, subcutaneously or intramuscularly. Alternatively, the polynucleotide or oligonucleotide may be delivered directly across the skin using a delivery device such as particle-mediated gene delivery. The polynucleotide or oligonucleotide may be administered topically to the skin, or to mucosal surfaces for example by intranasal, oral, or intrarectal administration.

Uptake of polynucleotide or oligonucleotide constructs may be enhanced by several known transfection techniques, for example those including the use of transfection agents. Examples of these agents include cationic agents, for example, calcium phosphate and DEAE-Dextran and lipofectants, for example, lipofectam and transfectam. The dosage of the polynucleotide or oligonucleotide to be administered can be altered.

Administration is typically in a “prophylactically effective amount” or a “therapeutically effective amount” (as the case may be, although prophylaxis may be considered therapy), this being sufficient to result in a clinical response or to show clinical benefit to the individual, e.g. an effective amount to prevent or delay onset of the disease or condition, to ameliorate one or more symptoms, to induce or prolong remission, or to delay relapse or recurrence.

The dose may be determined according to various parameters, especially according to the substance used; the age, weight and condition of the individual to be treated; the route of administration; and the required regimen. The amount of antigen in each dose is selected as an amount which induces an immune response. A physician will be able to determine the required route of administration and dosage for any particular individual. The dose may be provided as a single dose or may be provided as multiple doses, for example taken at regular intervals, for example 2, 3 or 4 doses administered hourly. Typically peptides, polynucleotides or oligonucleotides are typically administered in the range of 1 pg to 1 mg, more typically 1 pg to 10 μg for particle mediated delivery and 1 μg to 1 mg, more typically 1-100 μg, more typically 5-50 μg for other routes. Generally, it is expected that each dose will comprise 0.01-3 mg of antigen. An optimal amount for a particular vaccine can be ascertained by studies involving observation of immune responses in subjects.

Examples of the techniques and protocols mentioned above can be found in Remington's Pharmaceutical Sciences, 20th Edition, 2000, pub. Lippincott, Williams & Wilkins.

In some cases the method of treatment may comprise administration to a subject of more than one peptide, polynucleic acid or vector. These may be administered together/simultaneously and/or at different times or sequentially. The use of combinations of different peptides, optionally targeting different antigens, may be important to overcome the challenges of genetic heterogeneity of tumors and HLA heterogeneity of individuals. The use of peptides of the disclosure in combination expands the group of individuals who can experience clinical benefit from vaccination. Multiple pharmaceutical compositions of PEPIs, manufactured for use in one regimen, may define a drug product. In some cases different peptides, polynucleic acids or vectors of a single treatment may be administered to the subject within a period of, for example, 1 year, or 6 months, or 3 months, or 60 or 50 or 40 or 30 days.

Routes of administration include but are not limited to intranasal, oral, subcutaneous, intradermal, and intramuscular. The subcutaneous administration is particularly preferred. Subcutaneous administration may for example be by injection into the abdomen, lateral and anterior aspects of upper arm or thigh, scapular area of back, or upper ventrodorsal gluteal area.

The compositions of the disclosure may also be administered in one, or more doses, as well as, by other routes of administration. For example, such other routes include, intracutaneously, intravenously, intravascularly, intraarterially, intraperitnoeally, intrathecally, intratracheally, intracardially, intralobally, intramedullarly, intrapulmonarily, and intravaginally. Depending on the desired duration of the treatment, the compositions according to the disclosure may be administered once or several times, also intermittently, for instance on a monthly basis for several months or years and in different dosages.

Solid dosage forms for oral administration include capsules, tablets, caplets, pills, powders, pellets, and granules. In such solid dosage forms, the active ingredient is ordinarily combined with one or more pharmaceutically acceptable excipients, examples of which are detailed above. Oral preparations may also be administered as aqueous suspensions, elixirs, or syrups. For these, the active ingredient may be combined with various sweetening or flavoring agents, coloring agents, and, if so desired, emulsifying and/or suspending agents, as well as diluents such as water, ethanol, glycerin, and combinations thereof.

One or more compositions of the disclosure may be administered, or the methods and uses for treatment according to the disclosure may be performed, alone or in combination with other pharmacological compositions or treatments, for example chemotherapy and/or immunotherapy and/or vaccine. The other therapeutic compositions or treatments may for example be one or more of those discussed herein, and may be administered either simultaneously or sequentially with (before or after) the composition or treatment of the disclosure.

In some cases the treatment may be administered in combination with checkpoint blockade therapy/checkpoint inhibitors, co-stimulatory antibodies, cytotoxic or non-cytotoxic chemotherapy and/or radiotherapy, targeted therapy or monoclonal antibody therapy. It has been demonstrated that chemotherapy sensitizes tumors to be killed by tumor specific cytotoxic T cells induced by vaccination (Ramakrishnan et al. J Clin Invest. 2010; 120(4):1111-1124). Examples of chemotherapy agents include alkylating agents including nitrogen mustards such as mechlorethamine (HN2), cyclophosphamide, ifosfamide, melphalan (L-sarcolysin) and chlorambucil; anthracyclines; epothilones; nitrosoureas such as carmustine (BCNU), lomustine (CCNU), semustine (methyl-CCNU) and streptozocin (streptozotocin); triazenes such as decarbazine (DTIC; dimethyltriazenoimidazole-carboxamide; ethylenimines/methylmelamines such as hexamethylmelamine, thiotepa; alkyl sulfonates such as busulfan; Antimetabolites including folic acid analogues such as methotrexate (amethopterin); alkylating agents, antimetabolites, pyrimidine analogs such as fluorouracil (5-fluorouracil; 5-FU), floxuridine (fluorodeoxyuridine; FUdR) and cytarabine (cytosine arabinoside); purine analogues and related inhibitors such as mercaptopurine (6-mercaptopurine; 6-MP), thioguanine (6-thioguanine; TG) and pentostatin (2′-deoxycoformycin); epipodophylotoxins; enzymes such as L-asparaginase; biological response modifiers such as IFNα, IL-2, G-CSF and GM-CSF; platinum coordination complexes such as cisplatin (cis-DDP), oxaliplatin and carboplatin; anthracenediones such as mitoxantrone and anthracycline; substituted urea such as hydroxyurea; methylhydrazine derivatives including procarbazine (N-methylhydrazine, MIH) and procarbazine; adrenocortical suppressants such as mitotane (o,p′-DDD) and aminoglutethimide; taxol and analogues/derivatives; hormones/hormonal therapy and agonists/antagonists including adrenocorticosteroid antagonists such as prednisone and equivalents, dexamethasone and aminoglutethimide, progestin such as hydroxyprogesterone caproate, medroxyprogesterone acetate and megestrol acetate, estrogen such as diethylstilbestrol and ethinyl estradiol equivalents, antiestrogen such as tamoxifen, androgens including testosterone propionate and fluoxymesterone/equivalents, antiandrogens such as flutamide, gonadotropin-releasing hormone analogs and leuprolide and non-steroidal antiandrogens such as flutamide; natural products including vinca alkaloids such as vinblastine (VLB) and vincristine, epipodophyllotoxins such as etoposide and teniposide, antibiotics such as dactinomycin (actinomycin D), daunorubicin (daunomycin; rubidomycin), doxorubicin, bleomycin, plicamycin (mithramycin) and mitomycin (mitomycin C), enzymes such as L-asparaginase, and biological response modifiers such as interferon alphenomes.

In some cases the method of treatment is a method of vaccination or a method of providing immunotherapy. As used herein, “immunotherapy” is the treatment of a disease or condition by inducing or enhancing an immune response in an individual. In certain embodiments, immunotherapy refers to a therapy that comprises the administration of one or more drugs to an individual to elicit T cell responses. In a specific embodiment, immunotherapy refers to a therapy that comprises the administration or expression of polypeptides that contain one or more PEPIs to an individual to elicit a T cell response to recognize and kill cells that display the one or more PEPIs on their cell surface in conjunction with a class I HLA. In another specific embodiment, immunotherapy comprises the administration of one or more PEPIs to an individual to elicit a cytotoxic T cell response against cells that display tumor associated antigens (TAAs), tumor specific antigens (TSAs) or cancer testis antigens (CTAs) comprising the one or more PEPIs on their cell surface. In another embodiment, immunotherapy refers to a therapy that comprises the administration or expression of polypeptides that contain one or more PEPIs presented by class II HLAs to an individual to elicit a T helper response to provide co-stimulation to cytotoxic T cells that recognize and kill diseased cells that display the one or more PEPIs on their cell surface in conjunction with a class I HLAs. In still another specific embodiment, immunotherapy refers to a therapy that comprises administration of one or more drugs to an individual that re-activate existing T cells to kill target cells. The theory is that the cytotoxic T cell response will eliminate the cells displaying the one or more PEPIs, thereby improving the clinical condition of the individual. In some instances, immunotherapy may be used to treat tumors. In other instances, immunotherapy may be used to treat intracellular pathogen-based diseases or disorders.

In some cases the disclosure relates to the treatment of cancer or any specific type of cancer described herein. In some other cases the disclosure relates to the treatment of a viral, bacterial, fungal or parasitic infection, or any other disease or condition that may be treated by immunotherapy.

Further Embodiments of the Disclosure

1. A pharmaceutical composition, comprising two or more different peptides, wherein each peptide is up to 50 amino acids in length and comprises the amino acid sequence of any of SEQ ID NOs: 1 to 2786 and/or 5432 to 5931.

2. The pharmaceutical composition of item 1, comprising at least 3, at least 4, at least 5, at least 6, at least 7, at least 8, at least 9, at least 10, at least 11, or at least 12 different peptides, wherein each peptide is up to 50 amino acids in length and comprises the amino acid sequence of any of SEQ ID Nos: 1 to 2786 and/or 5432 to 5931.

3. A pharmaceutical composition comprising one or more polynucleic acids or vectors that encode two or more peptides wherein each peptide is up to 50 amino acids in length and comprises the amino acid sequence of any of SEQ ID NOs: 1 to 2786 and/or 5432 to 5931.

4. The pharmaceutical composition of item 2 comprising at least 2, at least 3, at least 4, at least 5, at least 6, at least 7, at least 8, at least 9, at least 10, at least 11, or at least 12 polynucleic acids or vectors.

5. The pharmaceutical composition of item 1 or item 3, wherein each peptide or encoded peptide comprises at least one amino acid sequence selected from one of the following groups:

-   -   (a) the sequences listed in Table 25A and/or 25B and indicated         in Table 25A or 25B to be a fragment of a breast         cancer-associated antigen listed in Table 24;     -   (b) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a lung         cancer-associated antigen listed in Table 24;     -   (c) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a prostate         cancer-associated antigen listed in Table 24;     -   (d) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a colorectal         cancer-associated antigen listed in Table 24;     -   (e) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a bladder         cancer-associated antigen listed in Table 24;     -   (f) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a ovarian         cancer-associated antigen listed in Table 24;     -   (g) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a pancreatic         cancer-associated antigen listed in Table 24;     -   (h) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a brain         cancer-associated antigen listed in Table 24;     -   (i) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a         leukemia-associated antigen listed in Table 24;     -   (j) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a         lymphoma-associated antigen listed in Table 24;     -   (k) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a         hepatocellular cancer-associated antigen listed in Table 24;     -   (l) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a         melanoma-associated antigen listed in Table 24;     -   (m) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a thyroid         cancer-associated antigen listed in Table 24;     -   (n) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a pediatric         cancer-associated antigen listed in Table 24;     -   (o) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a gastric         cancer-associated antigen listed in Table 24;     -   (p) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a kidney         cancer-associated antigen listed in Table 24;     -   (q) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a head and         neck cancer-associated antigen listed in Table 24; and     -   (r) the sequences listed in Table 25A and/or Table 25B and         indicated in Table 25A or 25B to be a fragment of a cervical         cancer-associated antigen listed in Table 24.

6. The pharmaceutical composition according to any of items 1-5 further comprising a pharmaceutically acceptable adjuvant, diluent, carrier, preservative, or a combination thereof.

7. A kit comprising:

-   -   a. a first pharmaceutical composition comprising one or more         peptides, wherein each peptide comprises a different one of the         amino acid sequence of any one of SEQ ID NOs: 1 to 2786 and/or         5432 to 5931; and     -   b. a second different pharmaceutical composition comprising one         or more peptides, wherein each peptide comprises a different one         of the amino acid sequence of any one of SEQ ID NOs: 1 to 2786         and/or 5432 to 5931.

8. The kit of item 7, further comprising a package insert.

9. A method of inducing a cytotoxic T cell response and/or a helper T cell response in a subject of a target population, the method comprising administering a pharmaceutical composition according to any one of item 1 to item 7.

10. The method of item 9, further comprising prior to the administering step, determining if the subject is likely to have an have a clinical response to administration of the pharmaceutical composition by

-   -   a. determining that each peptide, or encoded peptide of the         pharmaceutical composition comprises at least one amino acid         sequence that is a T cell epitope capable of binding to at least         three HLA class I molecules of the subject; and     -   b. predicting that the subject will have a cytotoxic T cell         response to each peptide, each encoded peptide, polynucleic acid         or vector of the pharmaceutical composition.

11. A method of vaccination, providing immunotherapy or inducing a cytotoxic T cell response in a subject, the method comprising administering to the subject a pharmaceutical composition according to any one of item 1 to item 6.

12. The method of item 11 wherein the peptides, polynucleic acids or vectors of the pharmaceutical composition have been predicted to induce a cytotoxic T cell response and/or a helper T cell response in the subject using a method comprising:

-   -   a. determining that each peptide, or encoded peptide of the         pharmaceutical composition comprises at least one amino acid         sequence that is a T cell epitope capable of binding to at least         three HLA class I molecules of the subject; and     -   b. predicting that the subject will have a cytotoxic T cell         response to each peptide, encoded peptide, polynucleic acid or         vector of the pharmaceutical composition. 13. The method of item         12, wherein the peptides or encoded peptides of the         pharmaceutical composition are fragments of two or more         different cancer associated antigens selected from those listed         in Table 22.

14. The method according to any one of item 9 to item 14 that is a method of treating cancer, optionally bladder cancer, brain cancer, breast cancer, colorectal cancer, gastric cancer, hepatocellular cancer, leukemia, lung cancer, lymphoma, melanoma, ovarian cancer, pancreatic cancer, pediatric cancer, thyroid cancer or prostate cancer.

15. A method of designing or preparing a peptide, or a polynucleic acid or vector that encodes

-   -   a peptide, or a panel of peptides, or one or more polynucleic         acid or vectors that encode a panel of peptides, for use in a         method of inducing a T cell response against a target         polypeptide, the method comprising         -   (i) selecting or defining a model human population             comprising a plurality of subjects each defined by HLA class             I genotype and/or by HLA class II genotype;         -   (ii) identifying for each subject of the model population:             -   (a) amino acid sequences of the target polypeptide that                 are a T cell epitope capable of binding to at least                 three HLA class I molecules of the subject;             -   (b) amino acid sequences of the target polypeptide that                 are a T cell epitope capable of binding to at least four                 HLA class II molecules of the subject;             -   (c) amino acid sequences of the target polypeptide that                 comprise a T cell epitope capable of binding to at least                 three HLA class I molecules of the subject and a T cell                 epitope capable of binding to at least four HLA class II                 molecules of the subject; or             -   (d) amino acid sequences of the target polypeptide that                 both                 -   a. are a T cell epitope capable of binding to at                     least four HLA class II molecules; and                 -   b. comprise an amino acid sequence that is a T cell                     epitope capable of binding to at least three HLA                     class I molecules of the subject;         -   (iii) selecting a polypeptide fragment window length of             between 9 and 50 amino acids;         -   (iv) identifying a fragment of the target polypeptide that             -   (c) has the length selected in step (iii); and             -   (d) comprises an amino acid sequence identified in any                 one of step (ii) (a) to (d) in the highest proportion of                 subjects in the model population;         -   (v) optionally testing the fragment identified in step (iv)             against additional pre-defined criteria, rejecting the             fragment if the further pre-defined criteria are not met,             and repeating step (iv) to identify an alternative fragment             of the target polypeptide that             -   (a) has the length selected in step (iii); and             -   (b) comprises an amino acid sequence identified in                 step (iv) in the next highest proportion of subjects in                 the model population;         -   (vi) optionally repeating step (iv) and further optionally             step (v) in one or more further rounds, wherein a further             fragment of the target polypeptide is identified in each             round, and wherein in each round subjects are excluded from             the model population if any of the fragments selected in             step (iv) and not rejected in step (v) of any of the             preceding rounds comprises an amino acid sequence identified             in step (ii) for that subject; and         -   (vii) designing or preparing a peptide, a polynucleic acid             or vector that encodes a peptide, a panel of peptides, or             one or more polynucleic acids or vectors that encode a panel             of peptides, wherein each peptide comprises one or more of             the target polypeptide fragments identified in step             (iv), (v) or (vi), optionally wherein the polypeptide             fragment is flanked at the N and/or C terminus by additional             amino acids that are not part of the sequence of the target             polypeptide antigen.

16. The method according to item 15, wherein the target polypeptide is expressed by pathogenic organism, a virus or a cancer cell, or is a cancer testes antigen, optionally wherein the target polypeptide is selected from the antigens listed in any of Tables 2 to 5.

17. The method according to item 15 or item 16, further comprising selecting two or more peptides, polynucleic acids or vectors designed or prepared according to the method of item 15 or 16 for use in a method of vaccinating, providing immunotherapy to, or inducing a cytotoxic and/or helper T cell response in a subject, optionally wherein each of the two or more peptides or encoded peptides comprises an amino acid sequence that is

-   -   (a) a fragment of a polypeptide that is expressed by a         pathogenic organism, a virus or a cancer cell; and     -   (b) a T cell epitope capable of binding to at least three HLA         class I molecules of the subject or a T cell epitope capable of         binding to at least four HLA class II molecules of the subject;     -   and wherein the method further comprises administering the one         or more peptides, polynucleic acids or vectors to the subject.

18. A pharmaceutical composition comprising a panel of peptides, polynucleic acids or vectors designed and/or prepared according to the method of item 15 or item 16, or comprising or encoding two or more peptides designed and/or prepared according to the method of item 15 or item 16.

19. A pharmaceutical composition comprising a panel of peptides, or one or more polynucleic acids or vectors encoding a panel of peptides, for use in a method of inducing a T cell response against one or more target polypeptides in a subject of a target human population, wherein each of the peptides, or encoded peptides, comprises an amino acid sequence that is

-   -   (a) 9 to 50 amino acids in length; and     -   (b) comprises a fragment of the one or more target polypeptides,         wherein the fragment comprises, in at least 10% of subjects of         the intent-to-treat human population:         -   a. an amino acid sequence of the target polypeptide that is             a T cell epitope capable of binding to at least three HLA             class I molecules of the subject;         -   b. an amino acid sequence of the target polypeptide that is             a T cell epitope capable of binding to at least four HLA             class II molecules of the subject;         -   c. an amino acid sequence of the target polypeptide that             comprise a T cell epitope capable of binding to at least             three HLA class I molecules of the subject and a T cell             epitope capable of binding to at least four HLA class II             molecules of the subject; or         -   d. an amino acid sequence of the target polypeptide that             both             -   i. is a T cell epitope capable of binding to at least                 four HLA class II molecules; and             -   ii. comprise an amino acid sequence that is a T cell                 epitope capable of binding to at least three HLA class I                 molecules of the subject

20. The pharmaceutical composition according to item 18 or item 19, further comprising a pharmaceutically acceptable adjuvant, diluent, carrier, preservative, or a combination thereof.

21. A method of vaccination, providing immunotherapy or inducing a cytotoxic T cell response in a subject, the method comprising administering to the subject a pharmaceutical composition according to any of item 18 to item 20.

22. The method of item 21, wherein one or more or each of the peptides or the encoded peptides of the pharmaceutical composition comprises an amino acid sequence that is

-   -   (a) a fragment of a polypeptide that is expressed by a         pathogenic organism, a virus or a cancer cell; and     -   (b) T cell epitope capable of binding to at least three HLA         class I molecules of the subject or a T cell epitope capable of         binding to at least four HLA class II molecules of the subject.

23. A method of providing immunotherapy to a subject in need thereof, the method comprising: administering to the individual a pharmaceutical composition, comprising i) two or more different peptides consisting of an amino acid sequence selected from the group consisting of SEQ ID Nos: 1 to 2786 and 5432 to 5931 and ii) a pharmaceutically acceptable adjuvant, diluent, carrier, preservative, or a combination thereof, thereby inducing an immune response.

24. The method of item 23, further comprising:

-   -   predicting that the subject will have a CD8+ T cell response         and/or a CD4+ T cell response to each peptide of the         pharmaceutical composition by,     -   (i) a) determining that each peptide comprises at least one         amino acid sequence that is a T cell epitope capable of binding         to at least three HLA class I molecules of the subject; and         -   b) predicting that the subject will have a CD8+ T cell             response to each peptide of the pharmaceutical composition             or each peptide, polynucleic acid or vector of the kit; and     -   (ii) a) determining that each peptide comprises at least one         amino acid sequence that is a T cell epitope capable of binding         to at least three HLA class II molecules of the subject; and         -   b) predicting that the subject will have a CD4+ T cell             response to each peptide of the pharmaceutical composition.

25. The method of item 23, wherein the pharmaceutical composition comprises at least 3, at least 4, at least 5, at least 6, at least 7, at least 8, at least 9, at least 10, at least 11, or at least 12 different peptides, wherein each peptide consists of an amino acid sequence selected from the group consisting of SEQ ID Nos: 1 to 2786 and 5432 to 5931.

26. The method of item 23, wherein the peptides of the pharmaceutical composition are from different cancer associated antigens selected from Table 24.

27. The method of item 23, wherein the adjuvant comprises an aluminium salt, saponin, Lipid A, or a water-in-oil emulsion.

28. The method according to item 23, wherein the immunotherapy is a treatment for cancer.

29. The method of item 28, wherein the cancer is bladder cancer, brain cancer, breast cancer, colorectal cancer, gastric cancer, hepatocellular cancer, leukemia, lung cancer, lymphoma, melanoma, ovarian cancer, pancreatic cancer, pediatric cancer, thyroid cancer, prostate cancer, kidney cancer, head and neck cancer, esophageal cancer and cervical cancer.

30. A pharmaceutical composition, comprising

-   -   (a) at least two peptides consisting of 15 to 50 amino acids in         length, wherein each peptide comprises a different sequence and         which binds to at least three HLA class II alleles and at least         three HLA class I alleles; and     -   (b) an immunological adjuvant.

31. The pharmaceutical composition of item 30, wherein the at least two peptides each comprise a different sequence selected from SEQ ID Nos: 1 to 2786 and/or 5432 to 5931.

32. The pharmaceutical composition of item 30, comprising at least 3, at least 4, at least 5, at least 6, at least 7, at least 8, at least 9, at least 10, at least 11, or at least 12 different peptides, wherein each peptide comprises an amino acid sequence selected from the group consisting of SEQ ID Nos: 1 to 2786 and 5432 to 5931.

33. The pharmaceutical composition of item 30, wherein the peptides are from different cancer associated antigens selected from Table 24.

34. The pharmaceutical composition of item 30, wherein the adjuvant comprises an aluminium salt, saponin, Lipid A, or a water-in-oil emulsion.

35. A method of designing or preparing a peptide, or a polynucleic acid or vector that encodes a peptide, or a panel of peptides, or one or more polynucleic acid or vectors that encode a panel of peptides, for use in a method of inducing a T cell response against a target polypeptide, the method comprising

-   -   (i) selecting or defining a model human population comprising a         plurality of subjects each defined by HLA class I genotype         and/or by HLA class II genotype;     -   (ii) identifying for each subject of the model population:         -   (a) amino acid sequences of the target polypeptide that are             a T cell epitope capable of binding to at least three HLA             class I molecules of the subject;         -   (b) amino acid sequences of the target polypeptide that are             a T cell epitope capable of binding to at least three HLA             class II molecules of the subject;         -   (c) amino acid sequences of the target polypeptide that             comprise a T cell epitope capable of binding to at least             three HLA class I molecules of the subject and a T cell             epitope capable of binding to at least three HLA class II             molecules of the subject; or         -   (d) amino acid sequences of the target polypeptide that both             -   a. are a T cell epitope capable of binding to at least                 three HLA class II molecules; and             -   b. comprise an amino acid sequence that is a T cell                 epitope capable of binding to at least three HLA class I                 molecules of the subject;     -   (iii) selecting a polypeptide fragment window length of between         9 and 50 amino acids;     -   (iv) identifying a fragment of the target polypeptide that         -   (a) has the length selected in step (iii); and         -   (b) comprises an amino acid sequence identified in any one             of step (ii) (a) to (d) in the highest proportion of             subjects in the model population; and     -   (v) designing or preparing a peptide, a polynucleic acid or         vector that encodes a peptide, a panel of peptides, or one or         more polynucleic acids or vectors that encode a panel of         peptides, wherein each peptide comprises one or more of the         target polypeptide fragments identified in step (iv).

36. The method of item 35, wherein the polypeptide fragment is flanked at the N and/or C terminus by additional amino acids that are not part of the sequence of the target polypeptide antigen.

37. The method of item 35, further comprising (v) testing the fragment identified in step (iv) against additional pre-defined criteria, rejecting the fragment if the further pre-defined criteria are not met, and repeating step (iv) to identify an alternative fragment of the target polypeptide that has the length selected in step (iii); and comprises an amino acid sequence identified in step (iv) in the next highest proportion of subjects in the model population.

38. The method of item 37, further comprising repeating step (iv) and step (v) in one or more further rounds, wherein a further fragment of the target polypeptide is identified in each round, and wherein in each round subjects are excluded from the model population if any of the fragments selected in step (iv) and not rejected in step (v) of any of the preceding rounds comprises an amino acid sequence identified in step (ii) for that subject.

39. The method according to item 35, wherein the target polypeptide is expressed by pathogenic organism, a virus or a cancer cell, or is a cancer testes antigen, optionally wherein the target polypeptide is selected from the antigens listed in any of Tables 2 to 5.

40. The method according to item 35, further comprising selecting two or more peptides, polynucleic acids or vectors designed or prepared according to the method of claim 9 for use in a method of vaccinating, providing immunotherapy to, or inducing a cytotoxic and/or helper T cell response in a subject, wherein each of the two or more peptides or encoded peptides comprises an amino acid sequence that is

-   -   (a) a fragment of a polypeptide that is expressed by a         pathogenic organism, a virus or a cancer cell; and     -   (b) a T cell epitope capable of binding to at least three HLA         class I molecules of the subject or a T cell epitope capable of         binding to at least four HLA class II molecules of the subject;     -   and wherein the method further comprises administering the one         or more peptides, polynucleic acids or vectors to the subject.

EXAMPLES Example 1—HLA-Epitope Binding Prediction Process and Validation

Predicted binding between particular HLA and epitopes (9 mer peptides) was based on the Immune Epitope Database tool for epitope prediction (www.iedb.org).

The HLA I-epitope binding prediction process was validated by comparison with HLA class I-epitope pairs determined by laboratory experiments. A dataset was compiled of HLA I-epitope pairs reported in peer reviewed publications or public immunological databases.

The rate of agreement with the experimentally determined dataset was determined (Table 6). The binding HLA I-epitope pairs of the dataset were correctly predicted with a 93% probability. Coincidentally the non-binding HLA I-epitope pairs were also correctly predicted with a 93% probability.

TABLE 6 Analytical specificity and sensitivity of the HLA-epitope binding prediction process. True epitopes False epitopes (n = 327) (n = 100) HLA-epitope pairs (Binder match) (Non-binder match) HIV  91% (32)  82% (14) Viral 100% (35) 100% (11) Tumor  90% (172)  94% (32) Other (fungi, bacteria, etc.) 100% (65)  95% (36) All  93% (304)  93% (93)

The accuracy of the prediction of multiple HLA binding epitopes was also determined (Table 7). Based on the analytical specificity and sensitivity using the 93% probability for both true positive and true negative prediction and 7% (=100%-93%) probability for false positive and false negative prediction, the probability of the existence of a multiple HLA binding epitope in a person can be calculated. The probability of multiple HLA binding to an epitope shows the relationship between the number of HLAs binding an epitope and the expected minimum number of real binding. Per PEPI definition three is the expected minimum number of HLA to bind an epitope (bold).

TABLE 7 Accuracy of multiple HLA binding epitopes predictions. Expected minimum number of real Predicted number of HLAs binding to an epitope HLA binding 0 1 2 3 4 5 6 1 35% 95% 100% 100% 100% 100% 100% 2  6% 29%  90%  99% 100% 100% 100% 3  1%  4%  22%  84%  98% 100% 100% 4  0%  0%  2%  16%  78%  96%  99% 5  0%  0%  0%  1%  10%  71%  94% 6  0%  0%  0%  0%  0%  5%  65%

The validated HLA-epitope binding prediction process was used to determine all HLA-epitope binding pairs described in the Examples below.

Example 2—Epitope Presentation by Multiple HLA Predicts Cytotoxic T Lymphocyte (CTL) Response

This study investigates whether the presentation of one or more epitopes of a polypeptide antigen by one or more HLA class I molecule of an individual is predictive for a CTL response.

The study was carried out by retrospective analysis of six clinical trials, conducted on 71 cancer patients and 9 HIV-infected patients (Table 8). Patients from these studies were treated with an HPV vaccine, three different NY-ESO-1 specific cancer vaccines, one HIV-1 vaccine and a CTLA-4 specific monoclonal antibody (Ipilimumab) that was shown to reactivate CTLs against NY-ESO-1 antigen in melanoma patients. All of these clinical trials measured antigen specific CD8+ CTL responses (immunogenicity) in the study subjects after vaccination. In some cases, correlation between CTL responses and clinical responses were reported.

No patient was excluded from the retrospective study for any reason other than data availability. The 157 patient datasets (Table 8) were randomized with a standard random number generator to create two independent cohorts for training and evaluation studies. In some cases, the cohorts contained multiple datasets from the same patient, resulting in a training cohort of 76 datasets from 48 patients and a test/validation cohort of 81 datasets from 51 patients.

TABLE 8 Summary of patient datasets Immuno- # Data assay sets performed (#antigen in HLA Clinical Immuno- Target # × the clinical genotyping trial therapy Antigen Disease Patients* #patient) trials** method 1 VGX- HPV16- Cervical 17/18 5 × 17 IFN-γ High 3100 E6 cancer ELISPOT Resolution HPV16- SBT E7 HPV18- E6 HPV18- E7 HPV16/18 2 HIVIS HIV-1 AIDS  9/12 2 × 9 IFN-γ Low-Medium vaccine Gag HIV- ELISPOT Resolution 1 RT SSO 3 rNY- NY-ESO- Breast-and 18/18  1 × 18 In vitro and High ESO-1 1 ovarian Ex vivo IFN- Resolution cancers, γ ELISPOT SBT melanoma and sarcoma 4 Ipilimumab NY-ESO- Metastatic 19/20  1 × 19 ICS after Low to 1 melanoma T-cell medium stimulation resolution typing, SSP of genomic DNA, high resolution sequencing 5 NY-ESO-1f NY-ESO- Esophageal-, 10/10  1 × 10 ICS after SSO probing 1 (91-110) non-small- T-cell and SSP of cell lung- stimulation genomic and gastric DNA cancer 6 NY-ESO-1 NY-ESO- Esophageal-  7/9 1 × 7 ICS after SSO probing overlapping 1 (79-173) and lung T-cell and SSP of peptides cancer, stimulation genomic melanoma DNA Total 6 7 80 157

The reported CD8+ T cell responses of the training dataset were compared with the HLA class I restriction profile of epitopes (9 mers) of the vaccine antigens. The antigen sequences and the HLA class I genotype of each patient were obtained from publicly available protein sequence databases or peer reviewed publications and the HLA I-epitope binding prediction process was blinded to patients' clinical CD8+ T cell response data where CD8+ T cells are IFN-γ producing CTL specific for vaccine peptides (9 mers). The number of epitopes from each antigen predicted to bind to at least 1 (PEPI1+), or at least 2 (PEPI2+), or at least 3 (PEPI3+), or at least 4 (PEPI4+), or at least 5 (PEPI5+), or all 6 (PEPI6) HLA class I molecules of each patient was determined and the number of HLA bound were used as classifiers for the reported CTL responses. The true positive rate (sensitivity) and true negative rate (specificity) were determined from the training dataset for each classifier (number of HLA bound) separately.

ROC analysis was performed for each classifier. In a ROC curve, the true positive rate (Sensitivity) was plotted in function of the false positive rate (1-Specificity) for different cut-off points (FIG. 1). Each point on the ROC curve represents a sensitivity/specificity pair corresponding to a particular decision threshold (epitope (PEPI) count). The area under the ROC curve (AUC) is a measure of how well the classifier can distinguish between two diagnostic groups (CTL responder or non-responder).

The analysis unexpectedly revealed that predicted epitope presentation by multiple class I HLAs of a subject (PEPI2+, PEPI3+, PEPI4+, PEPI5+, or PEPI6), was in every case a better predictor of the CD8+ T cell response or CTL response than epitope presentation by merely one or more HLA class I (PEPI1+, AUC=0.48, Table 9).

TABLE 9 Determination of diagnostic value of the PEPI biomarker by ROC analysis Classifiers AUC PEPI1+ 0.48 PEPI2+ 0.51 PEPI3+ 0.65 PEPI4+ 0.52 PEPI5+ 0.5 PEPI6+ 0.5

The CTL response of an individual was best predicted by considering the epitopes of an antigen that could be presented by at least 3 HLA class I alleles of an individual (PEPI3+, AUC=0.65, Table 9). The threshold count of PEPI3+(number of antigen-specific epitopes presented by 3 or more HLA of an individual) that best predicted a positive CTL response was 1 (Table 10). In other words, at least one antigen-derived epitope is presented by at least 3 HLA class I of a subject (≥1 PEPI3+), then the antigen can trigger at least one CTL clone, and the subject is a likely CTL responder. Using the ≥1 PEPI3+ threshold to predict likely CTL responders (“≥1 PEPI3+ test”) provided 76% true positive rate (diagnostic sensitivity) (Table 10).

TABLE 10 Determination of the ≥1 PEPI3+ threshold to predict likely CTL responders in the training dataset. PEPI3+ Count 1 2 3 4 5 6 7 8 9 10 11 12 Sensitivity: 0.76 0.60 0.31 0.26 0.14 0.02 0 0 0 0 0 0 1-Specificity: 0.59 0.24 0.21 0.15 0.09 0.06 0.06 0.03 0.03 0.03 0.03 0.03

Example 3—Retrospective Validation of the ≥1 PEPI3+ Threshold as Novel Biomarker for PEPI Test

In a retrospective analysis, the test cohort of 81 datasets from 51 patients was used to validate the ≥1 PEPI3+ threshold to predict an antigen-specific CD8+ T cell response or CTL response. For each dataset in the test cohort it was determined whether the ≥1 PEPI3+ threshold was met (at least one antigen-derived epitope presented by at least three class I HLA of the individual). This was compared with the experimentally determined CD8+ T cell responses (CTL responses) reported from the clinical trials (Table 11).

The retrospective validation demonstrated that a PEPI3+ peptide induces CD8+ T cell response (CTL response) in an individual with 84% probability. 84% is the same value that was determined in the analytical validation of the PEPI3+ prediction, epitopes that binds to at least 3 HLAs of an individual (Table 7). These data provide strong evidences that immune responses are induced by PEPIs in individuals.

TABLE 11 Diagnostic performance characteristics of the ≥1 PEPI3+ test (n = 81). Performance characteristic Description Result Positive 100%[A/(A + B)] The likelihood that an individual that meets the 84% predictive ≥1 PEPI3+ threshold has antigen-specific CTL value (PPV) responses after treatment with immunotherapy. Sensitivity 100%[A/(A + C)] The proportion of subjects with antigen-specific 75% CTL responses after treatment with immunotherapy who meet the ≥1 PEPI3+ threshold. Specificity 100%[D/(B + D)] The proportion of subjects without antigen- 55% specific CTL responses after treatment with immunotherapy who do not meet the ≥1 PEPI3+ threshold. Negative 100%[D/(C + D)] The likelihood that an individual who does not 42% predictive meet the ≥1 PEPI3+ threshold does not have value antigen-specific CTL responses after treatment (NPV) with immunotherapy. Overall 100%[(A + D)/N] The percentage of predictions based on the ≥1 70% percent PEPI3+ threshold that match the experimentally agreement determined result, whether positive or negative. (OPA) Fisher's  0.01 exact (p)

ROC analysis determined the diagnostic accuracy, using the PEPI3+ count as cut-off values (FIG. 2). The AUC value=0.73. For ROC analysis an AUC of 0.7 to 0.8 is generally considered as fair diagnostic value.

A PEPI3+ count of at least 1 (≥1 PEPI3+) best predicted a CTL response in the test dataset (Table 12). This result confirmed the threshold determined during the training (Table 9).

TABLE 12 Confirmation of the ≥1 PEPI3+ threshold to predict likely CTL responders in the test/validation dataset. PEPI3+ Count 1 2 3 4 5 6 7 8 9 10 11 12 Sensitivity: 0.75 0.52 0.26 0.23 0.15 0.13 0.08 0.05 0 0 0 0 1-Specificity: 0.45 0.15 0.05 0 0 0 0 0 0 0 0 0

Example 4—Clinical Validation of the ≥1 PEPI3+ Threshold as Novel Biomarker for PEPI Test

The PEPI3+ biomarker-based vaccine design has been tested first time in a phase I clinical trial in metastatic colorectal cancer (mCRC) patients in the OBERTO phase I/II clinical trial (NCT03391232). In this study, we evaluated the safety, tolerability and immunogenicity of a single or multiple dose(s) of PolyPEPI1018 as an add-on to maintenance therapy in subjects with mCRC. PolyPEPI1018 is a peptide vaccine containing 12 unique epitopes derived from 7 conserved TSAs frequently expressed in mCRC (WO2018158455 A1). These epitopes were designed to bind to at least three autologous HLA alleles that are more likely to induce T-cell responses than epitopes presented by a single HLA (See Examples 2 & 3). mCRC patients in the first line setting received the vaccine (dose: 0.2 mg/peptide) just after the transition to maintenance therapy with a fluoropyrimidine and bevacizumab. Vaccine-specific T-cell responses were first predicted by identification of PEPI3+-s in silico (using the patient's complete HLA genotype and antigen expression rate specifically for CRC) and then measured by ELISpot after one cycle of vaccination (phase I part of the trial).

Seventy datasets from 10 patients (Phase 1 cohort and dataset of OBERTO trial) was used to prospectively validate that PEPI3+ biomarker predicts antigen-specific CTL responses. For each dataset, predicted PEPI3+-s were determined in silico and compared to the vaccine-specific immune responses measured by ELISPOT assay from the patients' blood. Diagnostic characteristics (positive predictive value, negative predictive value, overall percent agreement) determined this way were then compared with the retrospective validation results described in Example 3.

The overall percent agreement was 64%, with high positive predictive value of 79%, representing 79% probability that the patient with predicted PEPI3+ will produce CD8 T cell specific immune response against the analyzed antigen. Clinical trial data were significantly correlated with the retrospective trial results (p=0.01) and provides evidence for the PEPI3+ calculation with PEPI test to predict antigen-specific T cell responses based on the complete HLA-genotype of patients (Table 13).

TABLE 13 Prospective validation of the ≥1 PEPI3+ and PEPI test Prospective Retrospective validation validation (OBERTO) Parameter Definition n = 81* n = 70** PPV The likelihood that an 84% 79% Positive individual with a positive Predictive PEPI test result has Value antigen-specific T cell responses NPV The likelihood that an 42% 51% Negative individual with a negative Predictive PEPI test result does not Value have antigen-specific T cell responses OPA The percentage of results 70% 64% Overall Percent that are true results, Agreement whether positive or negative Fisher's exact 0.01 0.01 probability test (p) *51 patients; 6 clinical trials; 81 dataset **10 patients; Treos phase I clinical trial (OBERTO); 70 datasets

Example 5—the ≥1 PEPI3+ Test Predicts CD8+ T Cell Reactivities

Supporting data were obtained to show that the ≥1 PEPI3+ correlates with clinical immunogenicity data but the state-of-art mono-HLA specific epitope determination does not show correlation with vaccine-specific immunogenicity.

The ≥1 PEPI3+ calculation was compared with a state-of-art method for predicting a specific human subject's CTL response to peptide antigens.

The HLA genotypes of 28 cervical cancer and VIN-3 patients that received HPV-16 specific synthetic long peptide vaccine (LPV) in two different clinical trials were determined from DNA samples. The LPV consists of long peptides covering the HPV-16 viral oncoproteins E6 and E7. The amino acid sequence of the LPV was obtained from M. J. Welters, et al. Induction of tumor-specific CD4+ and CD8+ T-cell immunity in cervical cancer patients by a human papillomavirus type 16 E6 and E7 long peptides vaccine. Clin Cancer Res 14, 178-187 (2008)., G. G. Kenter, et al. Vaccination against HPV-16 oncoproteins for vulvar intraepithelial neoplasia. N Engl J Med 361, 1838-1847 (2009). M. J. Welters, et al. Success or failure of vaccination for HPV16-positive vulvar lesions correlates with kinetics and phenotype of induced T-cell responses. Proc Natl Acad Sci USA 107, 11895-11899 (2010). The publications also report the T cell responses of each vaccinated patient to pools of overlapping peptides of the vaccine. 25 (20 having VIN-3 and 5 having cervical cancer) patients had immune response data available, and 25 had clinical response data available.

For each patient, epitopes (9 mers) of the LPV that are presented by at least three patient class I HLA (PEPI3+s) were identified and their distribution among the peptide pools was determined. Peptides that comprised at least one PEPI3+(≥1 PEPI3+) were predicted to induce a CD8+ T cell response. Peptides that comprised no PEPI3+ were predicted not to induce a CD8+ T cell response.

The ≥1 PEPI3+ threshold correctly predicted 529 out of 555 negative CD8+ T cell responses (95% true negative (TN) rate) and 9 out of 45 positive CD8+ T cell responses (20% true positive (TP) rate) measured after vaccination (FIG. 3A). Overall, the agreement between the ≥1 PEPI3+ threshold and experimentally determined CD8+ T cell reactivity was 90% (p<0.001). For each patient the distribution among the peptide pools of epitopes that are presented by at least one patient class I HLA (≥1 PEPI1+, HLA restricted epitope prediction, prior art method) was also determined. Forty-two HLA class I binding epitopes predicted 45 CD8+ T cell responses (93% TP rate). In contrast, of the 555 negative T cell responses, only 105 were ruled out by HLA binding epitopes (19% TN rate) (FIG. 3B). Overall, the agreement between a single HLA class I allele binding epitope and CD8+ T cell response was 25%, which was not statistically significant.

Example 6—Prediction of HLA Class II Restricted CD4+ Helper T Cell Epitopes

The 28 cervical cancer and VIN-3 patients that received the HPV-16 synthetic long peptide vaccine (LPV) in two different clinical trials (as detailed in Example 5) were investigated for CD4+ T helper responses following LPV vaccination (FIGS. 4A-B). The TP rate of the prediction of HLA class II restricted epitopes was 95%, since the State of Art tool predicted 112 positive responses (positive CD4+ T cell reactivity to a peptide pool for a person's HLA class II alleles) out of 117. The TN rate was 0% since it could rule out 0 of 33 negative T cell responses. Overall, the agreement between HLA-restricted class II PEPI prediction and CD4+ T cell reactivity was 75% (not significant).

The HLA class II-binding PEPI3+-s predicted 86 of 117 positive CD4+ T-cell responses (73% TP rate) and ruled out 17 of 33 negative T-cell responses (52% TN rate). Overall, the agreement between HLA class II PEPI3+-s and CD4+ T-cell response was 69% (p=0.005) (FIG. 4A).

Example 7—the ≥1 PEPI3+ Test Predicts T Cell Responses to Full Length LPV Polypeptides

Using the same studies as reported in Examples 5 and 6, the ≥1 PEPI3+ test was used to predict patient CD8+ and CD4+ T cell responses to the full length E6 and E7 polypeptide antigens of the LPV vaccine. Results were compared to the experimentally determined responses reported. The test correctly predicted the CD8+ T cell reactivity (PEPI3+) of 11 out of 15 VIN-3 patients with positive CD8+ T cell reactivity test results (sensitivity 70%, PPV 85%) and of 2 out of 5 cervical cancer patients (sensitivity 40%, PPV 100%) (FIG. 5A). The CD4+ T cell reactivities (PEPI3+) were correctly predicted 100% both of VIN-3 and cervical cancer patients (FIG. 5B). Class I and class II HLA restricted PEPI3+ count was also observed to correlate with the reported clinical benefit to LPV vaccinated patients. Patients with higher PEPI3+ counts had either complete or partial response already after 3 months. There was also a correlation between the number of PEPIs and clinical response in VIN-3 patients for HLA class II PEPIs but not HLA class I PEPIs, confirming the post-hoc analysis results from the clinical trial (FIGS. 5C and 5D).

Example 8—Case Study, PEPI3+ Correlation with Vaccine-Specific Immunogenicity

“Vaccine-1” is an HPV16 based DNA vaccine containing full length E6 and E7 antigens with a linker in between. “Vaccine-2” is an HPV18 based DNA vaccine containing full length E6 and E7 antigens with a linker in between (FIG. 6A). A Phase II clinical trial investigated the T cell responses of 17 HPV-infected patients with cervical cancer who were vaccinated with both “Vaccine-1” and “Vaccine-2” (“Vaccine-3” vaccination, Bagarazzi et al. Science Translational Medicine. 2012; 4(155):155ra138.).

FIG. 6B shows for two illustrative patients (patient 12-11 and patient 14-5) the position of each epitope (9 mer) presented by at least 1 (PEPI1+), at least 2 (PEPI2+), at least 3 (PEPI3+), at least 4 (PEPI4+), at least 5 (PEPI5+), or all 6 (PEPI6) class I HLA of these patients within the full length sequence of the two HPV-16 and two HPV-18 antigens.

Patient 12-11 had an overall PEPI1+ count of 54 for the combined vaccines (54 epitopes presented by one or more class I HLA). Patient 14-5 had a PEPI1+ count of 91. Therefore, patient 14-5 has a higher PEPI1+ count than patient 12-11 with respect to the four HPV antigens. The PEPI1+s represent the distinct vaccine antigen specific HLA restricted epitope sets of patients 12-11 and 14-5. Only 27 PEPI1+s were common between these two patients. For the PEPI3+ counts (number of epitopes presented by three or more patient class I HLA), the results for patients 12-11 and 14-5 were reversed. Patient 12-11 had a PEPI3+ count of 8, including at least one PEPI3+ in each of the four HPV16/18 antigens. Patient 14-5 had a PEPI3+ count of 0 (FIG. 6C).

The reported immune responses of these two patients matched the PEPI3+ counts, not the PEPI1+ counts. Patient 12-11 developed immune responses to each of the four antigens post-vaccination as measured by ELISpot, whilst patient 14-5 did not develop immune responses to any of the four antigens of the vaccines. A similar pattern was observed when the PEPI1+ and PEPI3+ sets of all 17 patients in the trial were compared. There was no correlation between the PEPI1+ count and the experimentally determined T cell responses reported from the clinical trial. However, correlation between the T cell immunity predicted by the ≥1 PEPI3+ test and the reported T cell immunity was observed. The ≥1 PEPI3+ test predicted the immune responders to HPV DNA vaccine.

Moreover, the diversity of the patient's PEPI3+ set resembled the diversity of T cell responses generally found in cancer vaccine trials. Patients 12-3 and 12-6, similar to patient 14-5, did not have PEPI3+s predicting that the HPV vaccine could not trigger T cell immunity. All other patients had at least one PEPI3 predicting the likelihood that the HPV vaccine can trigger T cell immunity. 11 patients had multiple PEPI3+ predicting that the HPV vaccine likely triggers polyclonal T cell responses. Patients 15-2 and 15-3 could mount high magnitude T cell immunity to E6 of both HPV, but poor immunity to E7. Other patients 15-1 and 12-11 had the same magnitude response to E7 of HPV18 and HPV16, respectively.

Example 9—Design of a Model Population for Conducting in Silico Trials and Identifying Candidate Precision Vaccine Targets for Large Population

An in silico human trial cohort of 433 subjects with complete 4-digit HLA class I genotype (2×HLA-A*xx:xx; 2×HLA-B*xx:xx; 2×HLA-C*xx:xx) and demographic information was compiled. This Model Population has subjects with mixed ethnicity having a total of 152 different HLA alleles that are representative for >85% of presently known allele G-groups.

A database of a “Big Population” containing 7,189 subjects characterized with 4-digit HLA genotype and demographic information was also established. The Big Population has 328 different HLA class I alleles. The HLA allele distribution of the Model Population significantly correlated with the Big Population (Table 14) (Pearson p<0.001). Therefore, the 433 patient Model Population is representative for a 16 times larger population. The Model Population is representative for 85% of the human race as given by HLA diversity as well as HLA frequency.

TABLE 14 Statistical analysis of HLA distributions in “Model Population” vs. “Big Population”. Group Group Pearson R name 1 name 2 value Correlation P Value 433 Model 7,189 Big 0.89 Strong P < 0.001 Population Population

Example 10—in Silico Trial Based on the Identification of Multiple HLA Binding Epitopes in a Multi-Peptide Vaccine IMA901 Predict the Reported Clinical Trial Immune Response Rate Probability of Targeting Multiple Antigens in the Tumor of RCC Patients

IMA901 is a therapeutic vaccine for renal cell cancer (RCC) comprising 9 peptides derived from tumor-associated antigens (TUMAPs). It was demonstrated that TUMAPs are naturally presented in human cancer tissue, they are overexpressed antigens shared by a subset of patients with the given cancer entity (Table 15). We estimated the probability that a TSA is expressed in a subject treated with IMA901 vaccine using available data from the scientific literature (FIG. 7). We used the Bayesian convention assuming that the expression probabilities follow a Beta-distribution.

We defined AG50 as the number of TSAs (AG) in the cancer vaccine that a specific tumor type expresses with 50% probability. The AG50 modelling of cancer vaccines assumes that each AG produces an effect proportional to the expression rate of the AG in the tumor type (if each AG in the vaccine is immunogenic).

For IMA901 vaccine targeting 9 antigens (9 TUMAPs), the AG50 value is 4.7, meaning that about half of the antigens are overexpressed in 50% of patients' tumor. Moreover, the probability of targeting 2 expressed antigens is 100% and 3 antigens is 96%. These results suggest high potency of IMA901 vaccine based on target antigen selection.

TABLE 15 Overexpression of TAAs in RCC tumors selected for IMA901 vaccine Published expression rate Estimated expression TAA (AG) in RCC tumors* rate (95% CI) ADF-001  5/11¹ 46% (21%, 72%) ADF-002 5/11 46% (21%, 72%) APO-001  9/11² 77% (52%, 95%) CCN-001 4/11 38% (15%, 65%) GUC-001 0/2² 25% (1%, 71%) K67-001 2/2  75% (29%, 99%) MET-001 11/11  92% (74%, 100%) MUC-001 0/11 8% (0%, 26%) RGS-001 7/11 62% (35%, 85%) *expression is defined as overexpression in tumors compared to healthy tissues provided in the source publications ¹Walter S et al, Multipeptide immune response to cancer vaccine IMA901 after single-dose cyclophosphamide associates with longer patient survival, Nature Medicine, (2012), 18, 1254-1261 ²Krüger T et al, Lessons to be learned from primary renal cell carcinomas, Cancer Immunol, Immunother, 2005, 54, 826-836

Probability of Inducing Immune Responses Against Multiple Antigens in the Tumor of RCC Patients

A total of 96 HLA-A*02+ subjects with advanced RCC were treated with IMA901 in two independent clinical studies (Phase I and Phase II) (Walter S et al, Multipeptide immune response to cancer vaccine IMA901 after single-dose cyclophosphamide associates with longer patient survival, Nature Medicine, (2012), 18, 1254-1261). Each of the 9 peptides in IMA901 have been identified as HLA-A*02-restricted epitopes. Based on currently accepted standards, all 9 peptides are strong candidates to boost T cell responses against renal cancer since their presence has been detected in renal cancer patients, and because the trial patients were specifically selected to have at least one HLA molecule (HLA-A*02) capable of presenting each of the peptides. Despite this restriction the immune response rate of the phase I and phase II clinical trials measured for at least one peptide of the vaccine was 74% and 64%, respectively. We analyzed by in silico prediction the HLA binding properties of each TUMAP in IMA901 and found that 8 out of the 9 TUMAPs can bind to many HLA-A*02 alleles confirming the identification process (FIGS. 8A-B). However, we found that each TUMAP can bind to many other HLA-B* and HLA-C* alleles (FIG. 8A).

Since the complete 4-digit HLA genotype of subjects who participated in IMA901 clinical trials were not available, we used the genotype data of 51 HLA-A*02 selected RCC subjects from another clinical trial, to characterize the immunogenicity of IMA901 vaccine (REF: Chowell D, Morris L G T, Grigg C M, Weber J K, Samstein R M, et al. Patient HLA class I genotype influences cancer response to checkpoint blockade immunotherapy. Science. 2018; 359 (6375): 582-587.). As presented on FIG. 8B, only few TUMAPs are able to bind to multiple HLAs of the same subject. The most immunogenic peptide in this context turned to be MET-001 capable of generating PEPI in 35% of RCC patients. However, CCN-001 could not generate PEPI in any of the patients, in agreement with FIG. 8A; CCN-001 can bind only to HLA-A*02 alleles. Based on FIG. 8A, MUC-001 is theoretically able to bind other alleles, too (both HLA-B and HLA-C), however those alleles were not present in the patients of our model population, therefore this peptide could not generate PEPI, either.

The immunogenicity of IMA901 vaccine determined in the 2 clinical trials was compared with the PEPI response rate determined using the PEPI test in our RCC model population. We found 67% (CI95 53-78%) immune response to at least one peptide of the IMA901 vaccine. According to PEPI test, 33% (CI95 22-47%) of these HLA-A*02+ subjects did not have 3 HLAs binding to any TUMAPs. Interestingly, IMA901 did not induce T cell responses in 25% and 36% of HLA-A*02 selected subjects in the Phase I and Phase II clinical trials, respectively. Furthermore, PEPI test predicted 30% (CI95 19-43%) of subjects with 1 PEPI to one TUMAP, and 37% (CI95 25-51%) have ≥2 PEPIs to at least two IMA901 peptides, which is in agreement with the average 40% and 27% immune response to 1 or ≥2 TUMAPs in both clinical trials (Table 16). The differences between the immunogenicity found in the 3 cohorts can be explained by the differences in the HLA genotype of the study subjects as well as the potential errors in measuring T cell responses and in determining PEPIs with the PEPI test (see Example 1). The phase I and phase II study results show the variability of the immune response rates of the same vaccine in different trial cohorts. However, the agreements between PEPI response rates and immunogenicity of peptide vaccines are determined by the host HLA sequences.

TABLE 16 Immunogenicity of IMA901 vaccine is determined by the host HLA genotype (multiple HLAs) RCC model Immune population responses to Phase I Phase II Phase I + II (n = 51)** TUMAPs (n = 27)* (n = 61)* (n = 88) (CI95%) No peptide 25% 36% 33% 33% (22-47%) ≥1 peptide 74% 64% 67% 67% (53-78%) 1 peptide 44% 38% 40% 30% (19-43%) ≥2 peptides 29% 26% 27% 37% (25-51%) *reported immunological data for the trials conducted with IMA901vaccine (REF: Walter Nat Med 2012); **Predicted by PEPI test

Similarly to the AG50, we defined AP50 as the average number of antigens with PEPI of a vaccine which shows how the vaccine can induce immune response against the antigens targeted by the composition (cancer vaccine specific immune response). AP, therefore is depending of the HLA heterogeneity of the analyzed population and is independent on the expression of the antigen on the tumor. The IMA901 composition can induce immune response against an average of 1.06 vaccine antigens (AP50=1.06) meaning that in the HLA-A*02 selected RCC model population it can induce immune response against at least one vaccine antigen. This result is far less compared to the designed intention of immunogenicity (HLA-matched patients treated with 9 peptides).

Comparison of Immunogenicity and Clinical Response of TUMAPs in the IMA901 Peptide Vaccine

An immune response induced by a vaccine against a single antigen might not be sufficient for clinical activity, as the given antigen might not be expressed in the patient. Therefore, we defined AGP as the immune response which targets an expressed antigen, taking into account both the immunogenicity and expression probability of the vaccine antigen on the tumor, presented above. AGP depends on the antigen (AG) expression rate in the indicated tumor and the HLA genotype of subjects capable to make PEPI (P) in the study population.

Therefore, we investigated the correlation between immune responses against different number of antigens (TUMAPs) and the immune responses against likely expressed antigens (AGP). We found that an immune response elicited by one peptide (1 TUMAP) corresponds to 0.98 AGP, meaning that there is 98% probability that the immune response induced by any peptide of the IMA901 vaccine will target an expressed antigen on the tumor (FIG. 9). However, immune responses elicited by 2 or 3 TUMAPs correspond to only 1.44 and 2.21 AGP, respectively. 0.35 AGP corresponding to 0 TUMAP indicates the cumulated error of PEPI test prediction (see Example 1).

characterize the potency of a cancer vaccine we defined AGP50, a parameter showing the number of antigens that the vaccine induced CTLs can recognize in a tumor with 50% probability. The computation is similar to the AG50 but in addition to the expression, the occurrence of the PEPI presentation on certain vaccine antigen is also considered. AGP50 for IMA901 vaccine for the RCC model population is 1.10.

In a retrospective analysis, IMA901 clinical trial investigators found that significantly more subjects who responded to multiple TUMAPs of IMA901 experienced disease control (DC, stable disease or partial response) compared with subjects who had no response or responded to only 1 TUMAP (Table 17). Since the presence of PEPIs accurately predicted the responders to TUMAPs, we investigated the relationship between disease control rate in the TUMAP responder subpopulation and AGP. Similarly, to the investigators we analyzed the percentage of patients who are likely to have immune response against an expressed antigen (i.e.: ≥1 AGP) for the subpopulations predicted to have immune response to 0, 1 or 2 TUMAPs using our RCC model population. Interestingly, percentage of patients with 1 AGP is similar to the percentage of patients with disease control in the subpopulations: i.e.: 33% of patients had disease control vs 47% (CI95 23-67%) had 1 AGP and considerably more patients had disease control and AGP in the subgroup with immune response to 2 TUMAPs 75% vs 90% (CI95 70, 97%), respectively. These results suggest that only those patients are likely to experience clinical benefit, who have immune response against at least one expressed tumor antigen. Moreover, the percentage of patients with 1 AGP in our RCC model population is similar to the disease control rate of the phase I and phase II trials conducted with IMA901 vaccine (Table 17).

TABLE 17 Correlation between clinical benefit and AGP % of pts with DC in the clinical % pts with 1 AGP in the Subpopulation subpopulation model subpopulation (CI95) No IR 14% 5% (0%, 18%) IR to 1 TUMAP 33% 47% (23%, 67%) IR to ≥2 TUMAPs 75% 90% (70%, 97%) Phase I 40% 49% (35%, 61%) Phase II 31%

Analysis of IMA901 Vaccine Potency in Multiple Populations

As shown in Table 18, AG50 value of 4.7 was observed for IMA901 vaccine, suggesting high potency based on target antigen selection. However, AP50 for IMA901 in both the unselected general population and HLA-A*02 selected subjects were only 0.75 and 1.12, respectively. Similar results were obtained for unselected RCC model population and HLA-A*02 selected populations. This results demonstrate that HLA-A*02 enrichment improved the antigenicity of IMA901, however did not ensure the immunogenicity of the vaccine. Consequently, the AGP50 values describing the potency of the vaccine are low in each population.

TABLE 18 Potency of IMA901 vaccine in in unselected population and HLA-A*02 selected subjects Model Population AG50 AP50 AGP50 All Subjects (n = 433) 4.7 0.75 0.49 HLA-A*02 Subjects (n = 180) 4.7 1.12 0.81 RCC population (n = 129) 4.7 0.61 0.70 RCC subpopulation A*02 (n = 51) 4.7 1.06 1.10

Example 11—in Silico Trials Based on the Identification of Multiple HLA Binding Epitopes Predict the Reported T Cell Response Rates of Clinical Trials

The objective of this study was to determine whether a model population, such as the one described in Example 9, may be used to predict CTL reactivity rates of vaccines, i.e. used in an in silico efficacy trial and to determine the correlation between the clinical outcome of vaccine trials and PEPI.

Published clinical trial results were collected from studies with therapeutic vaccines, which included 1,790 subjects in 64 clinical studies, treated with 42 therapeutic vaccines covering 61 different antigens (Table 19). The same vaccines used in those clinical trials were used to perform in silico trials with the model population of 433 human leukocyte antigen (HLA)-genotyped subjects (described in Example 9). No subjects were excluded for reasons other than data availability. IRR was defined as the proportion of subjects in the study population with T cell responses induced by the study vaccine. ORR was defined as the proportion of subjects in the study population with objective response (complete and partial response) after vaccination. The proportion of subjects with PEPIs (personal epitopes that bind to 3 HLA alleles of a subject), multiple PEPIs, and PEPIs in multiple antigens were computed in the in silico trials to obtain the PEPI Score, MultiPEPI Score, and MultiAgPEPI Score, respectively. The immune and objective response rates (IRR and ORR) from the published clinical trials were compared with the PEPI Score, MultiPEPI Score, and MultiAgPEPI Score. All reported and calculated scores are summarized in Table 20.

TABLE 19 Summary of patient demographics in the published clinical trials Characteristic Count Percentage Total subjects 1,790 Total studies 64 Subjects with HIV infection 12  1% Subjects with neoplasia or dysplasia 172  9% Subjects with cancer 1606 90% Subjects with solid tumors 1503 84% Subjects with liquid tumors 103  6% Subjects with metastatic tumors 788 44% Subjects with non-metastatic tumors 818 46% HLA selected subjects 918 51% Non- HLA selected subjects 872 49% Trials with HLA selected subjects 32 50% Trials without HLA selected subjects 32 50%

TABLE 20 Response rates and PEPI Scores Multi MultiAg PEPI PEPI PEPI Immunotherapy IRR ORR Score Score Score PSMA-Survivin pulsed DC — 18%   3%  0%  0% vaccine Peptide vaccine —  3%  10%  0%  0% HPV-SLP  83% 60%  73% 70% 34% 100% 60%  73% 70% 34% VGX-3100  78% 50%  87% 56% 64% Melanoma peptide vaccine  52% 12%  42%  6%  6% GAA peptides vaccine  55% 15%  18%  0%  0% KRM-20 peptide vaccine  40% 13%  36% 15% 15% Peptide vaccine 100% 25%  81%  3%  1% S-288310 peptide vaccine  67% 17%  44%  8%  8% KIF20A-66 peptide  70% 26%  38%  7% — PepCan  65% 52%  62% 26% — Iplilimumab (NYESO-1  72% 25%  84% 65% — specific response) p53 SLP70-248  88%  0%  77% 52% — 100%  0%  77% 52% —   0% —  77% 52% — p53 SLP70-235  21% —  75% 52% — GVX301  64%  0%  65%  7% — TroVax vaccine (OXB-301)  65%  0%  94% 83% —  57%  0%  94% 83% — StimuVax  21% —   2% — — IMA901  74% —  48% 27% 27%  64% —  48% 27% 27% ICT107  33% —  52% — — ProstVac  67% —  50% 23% —  45% —  50% 23% —  76% —  50% 23% —  67% —  50% 23% —  50% —  50% 23% —  72% —  50% 23% — Synchrotopc TA2M  46% —  24%  7% — MELITAC 12.1  49% —  47% 19% — HIVIS  50% —  88% — —  80% —  93% — — ImMucin  90% —  95% 70% — 100% 47%  95% 70% — NY-ESO-1 OLP  71% —  84% 65% —  82%  0%  84% 65% — WT1 vaccine  83% —  80% 77% — WT1 peptide vaccine  72%  6%  86% — — RHAMM-R3 peptide vaccine  44%  0%   0% — — GMMG-MM5 peptides  35% —  86% 21% 21% INGN-225 p53 vaccine  58%  4%  82% 61% — HR2822   8% —   3% — — GV1001  17% —   3% — —  45% —   3% — — Vx-001  51% —  33% — —  66%  7%  33% — —  58%  4%  33% — —  71%  0%  33% — — NY-ESO-1f  90%  0%  55% 18% — GL-08I7 (MAGE-A3 Trojan)  33% —  29%  3% —  57%  0%  29%  3% —   0%  0%  29%  3% — DPX0907 (per peptide)   0% —  22% — —  11% —  18% — —  11% —   7% — —  11% —  39% — —  17% —  12% — —  17% —   5% — —  22% —  31% — — CV9103 mRNA vaccine  80% — 100% — — TG4010 vaccine  38% 13%  43%  6% —  26%  0%  43%  6% —  21% —  43%  6% — —  0% — — — SVN-2B peptide vaccine  60% —  35% — — TSPP peptide vaccine —  5%  72% 31% — Her2/neu peptide vaccine (p369)  62% —   4% — — Her2/neu peptide vaccine (p688)  31% —   1% — — Her2/neu peptide vaccine (p971)  54% —   0% — — MART-1 Peptide Vaccine  15% —   0% — —

We investigated the correlation between ≥1 PEPI3+ Score and immune response rate in a previous study of 12 peptide vaccines derived from cancer antigens that induced T cell responses in a subpopulation of 172 subjects from 19 clinical trials, that were identified from peer reviewed publications. The experimentally determined response rates reported from the trials were compared with the ≥1 PEPI3+ Scores and linear correlation between ≥1 PEPI3+ Score and response rate (R²=0.70) was found (p=0.001) (FIG. 10A). The correlation between ≥1 PEPI3+ Score and immune response rate was then confirmed by the analysis of 59 clinical trials involving 1,343 subjects who were treated with 40 different vaccines. Each vaccine was analyzed by comparing the published IRR from the clinical trial to the PEPI Score from the model population (FIG. 10B). The correlation between the IRR and PEPI Score was significant (r²=0.465 and p=0.001). This result demonstrated that the PEPI Score determined by in silico trials in the MP accurately predicts the IRRs observed in clinical trials.

To test whether polyclonal T cell response increases the likelihood of tumor shrinkage, ORR and MultiPEPI Score were compared. Preliminary experiments analyzed the relationship between clinical response (either ORR or DCR) and MultiPEPI Score in 17 clinical trials conducted with peptide- and DNA-based immunotherapy vaccines. The results from these experiments demonstrated a significant correlation between clinical response rate and MultiPEPI Score (r²=0.75, p<0.001). To confirm these findings, ORR data from 27 clinical trials with 21 different vaccines, involving 600 subjects, were collected and analyzed (Error! Reference source not found.). The MultiPEPI Score was calculated as the percentage of subjects in the model population with multiple PEPIs from the study vaccine. The results from this experiment demonstrated that ORR does not correlate with MultiPEPI Score (Error! Reference source not found.).

Results from previous studies suggested that T cell responses against multiple antigens were associated with longer progression free- and overall survival. Consequently, we hypothesized that the induction of T cell responses against multiple tumor antigens increases the likelihood of tumor shrinkage. To test this hypothesis, ORR data from 10 clinical trials conducted with 9 different vaccines, involving 263 subjects, that were treated with multiantigen-targeting vaccine were collected and analyzed. The MultiAg PEPI Score was calculated as the percentage of subjects with vaccine-specific PEPIs on at least two antigens. The results from this experiment demonstrated a significant correlation between ORR and MultiAg PEPI Score (r²=0.64; p=0.01), and ORR and MultiPEPI Score (r²=0.88 and p=0.001) (Error! Reference source not found. and F, respectively). These results suggest that T cell responses against multiple tumor antigens may recognize a larger tumor cell population, thereby increasing the likelihood of tumor shrinkage.

The next analysis explored whether PEPI-specific T cell responses against antigens expressed in the tumor of interest, increase the likelihood of tumor shrinkage. A total of 15 clinical trials enrolled subjects with target antigen positive disease and 11 clinical trials had no subject preselection based on antigen expression. The proportion of subjects with objective response was significantly higher in CTs with target antigen-positive subjects compared with CTs without pre-selection (21.0% vs. 3.6%, respectively, p=0.03)

The correlation between ORR and MultiPEPI Score was statistically significant in subjects with confirmed expression of target antigens (r²=0.56, p=0.005) (FIG. 10G). These results emphasize the importance of the presence of cognate PEPI in the tumor, and also that the presence of the cognate PEPI in the tumor increases the likelihood of tumor shrinkage.

This study demonstrated that the link between a subject's HLA genotype and PEPI is the most important factor in predicting clinical response to a vaccine. This study also showed that the PEPI Score can predict the clinical outcome of therapeutic vaccines.

Example 12—Study Design of OBERTO Phase I/II Clinical Trial and Preliminary Safety Data

OBERTO trial is a Phase I/II trial of PolyPEPI1018 Vaccine and CDx for the Treatment of Metastatic Colorectal Cancer (NCT03391232). Study design is shown on FIG. 11.

Enrollment Criteria

-   -   Histologically confirmed metastatic adenocarcinoma originating         from the colon or the rectum     -   Presence of at least 1 measurable reference lesion according to         RECIST 1.1     -   PR or stable disease during first-line treatment with a systemic         chemotherapy regimen and 1 biological therapy regimen     -   Maintenance therapy with a fluoropyrimidine (5-fluorouracil or         capecitabine) plus the same biologic agent (bevacizumab,         cetuximab or panitumumab) used during induction, scheduled to         initiate prior to the first day of treatment with the study drug     -   Last CT scan at 3 weeks or less before the first day of         treatment

Subject Withdrawal and Discontinuation.

-   -   During the initial study period (12 W), if a patient experiences         disease progression and needs to start a second-line therapy,         the patient will be withdrawn from the study.     -   During the second part of the study (after 2nd dose) if a         patient experiences disease progression and needs to start a         second-line therapy, the patient will remain in the study,         receive the third vaccination as scheduled and complete         follow-up.     -   Transient local erythema and edema at the site of vaccination         were observed as expected, as well as a flu-like syndrome with         minor fever and fatigue. These reactions are already well-known         for peptide vaccination and usually are associated with the         mechanism of action, because fever and flu-like syndrome might         be the consequence and sign for the induction of immune         responses (this is known as typical vaccine reactions for         childhood vaccinations).     -   Only one serious adverse event (SAE) “possibly related” to the         vaccine was recorded (Table 21).     -   One dose limiting toxicity (DLT) not related to the vaccine         occurred (syncope).         Safety results are summarized in Table 21.

TABLE 21 Serious adverse events reported in the OBERTO clinical trial. No related SAE occurred (only 1 “possibly related”). Patient ID SAE Relatedness 010001 Death due to disease progression Unrelated 010004 Embolism Unlikely Related 010004 Abdominal pain Unrelated 010007 Bowel Obstruction Unrelated 020004 Non-Infectious Acute Encephalitis Possibly Related

Example 13—Expression Frequency Based Target Antigen Selection During Vaccine Design and It's Clinical Validation for mCRC

Shared tumor antigens enable precise targeting of all tumor types—including the ones with low mutational burden. Population expression data collected previously from 2,391 CRC biopsies represents the variability of antigen expression in CRC patients worldwide (FIG. 12A).

PolyPEPI1018 is a peptide vaccine we designed to contain 12 unique epitopes derived from 7 conserved testis specific antigens (TSAs) frequently expressed in mCRC. In our model we supposed, that by selecting the TSA frequently expressed in CRC, the target identification will be correct and will eliminate the need for tumor biopsy. We have calculated that the probability of 3 out of 7 TSAs being expressed in each tumor is greater than 95%. (FIG. 12B)

In a phase I study we evaluated the safety, tolerability and immunogenicity of PolyPEPI1018 as an add-on to maintenance therapy in subjects with metastatic colorectal cancer (mCRC) (NCT03391232) (See also in Example 4).

Immunogenicity measurements proved pre-existing immune responses and indirectly confirmed target antigen expression in the patients. Immunogenicity was measured with enriched Fluorospot assay (ELISPOT) from PBMC samples isolated prior to vaccination and in different time points following a following single immunization with PolyPEPI1018 to confirm vaccine-induced T cell responses; PBMC samples were in vitro stimulated with vaccine-specific peptides (9mers and 30mers) to determine vaccine-induced T cell responses above baseline. In average 4, at least 2 patients had pre-existing CD8 T cell responses against each target antigen (FIG. 12C). 7 out of 10 patients had pre-existing immune responses against at least 1 antigen (average 3) (FIG. 12D). These results provide proof for the proper target selection, because CD8+ T cell response for a CRC specific target TSA prior to vaccination with PolyPEPI1018 vaccine confirms the expression of that target antigen in the analyzed patient. Targeting the real (expressed) TSAs is the prerequisite for an effective tumor vaccine.

Example 14—Pre-Clinical and Clinical Immunogenicity of PolyPEPI1018 Vaccine Proves Proper Peptide Selection

PolyPEPI1018 vaccine contains six 30mer peptides, each designed by joining two immunogenic 15mer fragments (each involving a 9mer PEPI, consequently there are 2 PEPIs in each 30mer by design) derived from 7 TSAs (FIG. 13). These antigens are frequently expressed in CRC tumors based on analysis of 2,391 biopsies (FIG. 12).

Preclinical immunogenicity results calculated for the Model Population (n=433) and for a CRC cohort (n=37) resulted in 98% and 100% predicted immunogenicity based on PEPI test predictions and this was clinically proved in the OBERTO trial (n=10), with immune responses measured for at least one antigen in 90% of patients. More interestingly, 90% of patients had vaccine peptide specific immune responses against at least 2 antigens and 80% had CD8+ T cell response against 3 or more different vaccine antigens, showing evidence for appropriate target antigen selection during the design of PolyPEPI1018. CD4+ T cell specific and CD8+ T cell specific clinical immunogenicity is detailed in Table 22. High immune response rates were found for both effector and memory effector T cells, both for CD4+ and CD8+ T cells, and 9 of 10 patients' immune responses were boosted or de novo induced by the vaccine. Also, the fractions of CRC-reactive, polyfunctional CD8+ and CD4+ T cells have been increased in patient's PBMC after vaccination by 2.5- and 13-fold, respectively.

TABLE 22 Clinical immunogenicity results for PolyPEPI1018 in mCRC. Immunological responses % Patients (n) CD4+ T cell responses 100% (10/10) CD8+ T cell responses against ≥3 antigens 80% (8/10) Both CD8+ and CD4+ T cell responses 90% (9/10) Ex vivo detected CD8+ T cell response 71% (5/7) Ex vivo detected CD4+ T cell response 86% (6/7) Average increase of the fraction of  0.39% polyfunctional (IFN-γ and TNF-α positive) CD8+ T cells compared to pre-vaccination Average increase of the fraction of 0.066% polyfunctional (IL-2 and TNF-α positive) CD4+ T cells compared to pre-vaccination

Example 15—Clinical Response for PolyPEPI1018 Treatment

The OBERTO clinical trial (NCT03391232), that has been further described in Examples 4, 12, 13 and 14 was analyzed for preliminary objective tumor response rates (RECIST 1.1) (FIGS. 14A-C). Of the eleven vaccinated patients on maintenance therapy, 5 had stable disease (SD) at the time point of the preliminary analysis (12 weeks), 3 experienced unexpected tumor responses (partial response, PR) observed on treatment (maintenance therapy+ vaccination) and 3 had progressed disease (PD) according to RECIST 1.1 criteria. Stable disease as best response was achieved in 69% of patients on maintenance therapy (capecitabine and bevacizumab). Patient 020004 had durable treatment effect after 12 weeks, and patient 010004 had long lasting treatment effect, qualified for curative surgery. Following the 3^(rd) vaccination this patient had no evidence of disease thus being complete responder, as shown on the swimmer plot on FIGS. 14A-C.

After one vaccination, ORR was 27%, DCR was 63%, and in patients receiving at least 2 doses (out of the 3 doses), 2 of 5 had ORR (40%) and DCR was as high as 80% (SD+PR+CR in 4 out of 5 patients) (Table 23).

TABLE 23 Clinical response for PolyPEPI1018 treatment after ≥1 and ≥2 vaccination dose Number of Objective Response Rate Disease Control Rate vaccination dose (CR + PR) (SD + PR + CR) ≥1 27% (3/11) 63% (7/11) ≥2 40% (2/5) 80% (4/5)

Based on the data of the 5 patients receiving multiple doses of PolyPEPI1018 vaccine in the OBERTO-101 clinical trial, preliminary data suggests that higher AGP count (>2) is associated with longer PFS and elevated tumor size reduction (FIGS. 14B and C).

Example 16—Selection of Peptides for Treatment of Cancer

Based on the discovery of the role of PEPIs in T cell activation as described herein, a method was developed for designing peptides for the treatment of cancer. Specifically the peptides were designed to stimulate T cell responses against known tumor associated antigens in the maximum number of human subjects.

192 TSAs were selected that are known to be expressed in one or more of 19 cancer indications (Table 24). Data concerning expression rates of the TSA in the different cancer indications, where available in peer reviewed publications, was used to rank the TSA in each indication by expression frequency. The ranking order for the TSA is different in each indication.

TABLE 24 TSA by indication and Expression Rate (ER) AG # ID NO Antigen % BREAST 1 111 PIWIL1 100%  2 112 PIWIL2 94% 3 131 SPAG9 88% 4 8 AKAP-4 85% 5 36 EpCAM 76% 6 62 JARID1B 76% 7 27 CTCFL 74% 8 154 TSGA10 70% 9 140 Survivin 68% 10 19 CDCA1 64% 11 102 ODF4 63% 12 110 PEPP2 60% 13 71 MAGE-A11 59% 14 160 XAGE-1 58% 15 42 FMR1NB 55% 16 168 ATAD2 52% 17 191 WBP2NL 50% 18 31 DBPC 50% 19 116 PRAME 49% 20 59 HOM-TES-85 47% 21 96 NY-BR-1 47% 22 129 SP17 47% 23 79 MAGE-A9 44% 24 43 FSIP1 42% 25 2 ACRBP 40% 26 7 AKAP-3 40% 27 145 TDRD1 38% 28 41 FBXO39 38% 29 123 SCP-1 37% 30 66 LDHC 35% 31 67 LEMD1 35% 32 70 MAGE-A10 34% 33 69 MAGE-A1 31% 34 49 GAGE-7 31% 35 130 SPAG1 31% 36 22 CT46 29% 37 185 SPAG8 29% 38 74 MAGE-A3 28% 39 138 SSX-4 27% 40 132 SPAN-Xc 26% 41 184 SPAG6 21% 42 33 DKKL1 20% 43 86 MAGE-C2 19% 44 85 MAGE-C1 16% 45 20 CRISP2 15% 46 98 NY-ESO-1 15% 47 77 MAGE-A6 15% 48 21 CT45 15% 49 55 HAGE 14% 50 44 FTHL17 14% 51 30 CXorf61 13% 52 65 Lage-1 12% 53 72 MAGE-A12 12% 54 153 TRAG-3 10% 55 10 BAGE-1  9% 56 135 SSX-1  9% 57 75 MAGE-A4  9% 58 76 MAGE-A5  9% 59 63 KOC1  8% 60 136 SSX-2  7% 61 159 WT1  7% 62 127 SLCO6A1  7% 63 115 PLAC1  4% 64 23 CT47  4% 65 121 SAGE1  2% 66 95 NXF2  2% 67 149 TEX15  0% 68 147 TEX101  0% 69 142 TAF7L  0% 70 139 SSX-5  0% 71 137 SSX-3  0% 72 134 SPO11  0% 73 101 ODF3  0% 74 88 MORC1  0% 75 17 CALR3  0% 76 4 ADAM2  0% OVARIAN 1 36 EpCAM 92% 2 131 SPAG9 90% 3 8 AKAP-4 89% 4 113 PIWIL3 88% 5 140 Survivin 85% 6 153 TRAG-3 83% 7 27 CTCFL 82% 8 62 JARID1B 71% 9 111 PIWIL1 68% 10 2 ACRBP 65% 11 179 KIF20A 65% 12 159 WT1 63% 13 129 SP17 62% 14 112 PIWIL2 61% 15 116 PRAME 59% 16 33 DKKL1 57% 17 7 AKAP-3 48% 18 66 LDHC 43% 19 63 KOC1 43% 20 70 MAGE-A10 38% 21 79 MAGE-A9 37% 22 75 MAGE-A4 37% 23 154 TSGA10 35% 24 143 TAG-1 35% 25 21 CT45 33% 26 59 HOM-TES-85 32% 27 130 SPAG1 31% 28 35 DPPA2 31% 29 74 MAGE-A3 30% 30 124 SCP3a 25% 31 69 MAGE-A1 24% 32 98 NY-ESO-1 23% 33 65 Lage-1 22% 34 115 PLAC1 21% 35 31 DBPC 20% 36 85 MAGE-C1 20% 37 161 XAGE-1b 18% 38 123 SCP-1 15% 39 88 MORC1 14% 40 20 CRISP2 14% 41 144 TAG-2a 13% 42 138 SSX-4 13% 43 162 XAGE-1c 11% 44 136 SSX-2  7% 45 73 MAGE-A2  7% 46 163 XAGE-1d  6% 47 160 XAGE-1  5% 48 135 SSX-1  2% 49 139 SSX-5  0% 50 137 SSX-3  0% 51 134 SPO11  0% 52 132 SPAN-Xc  0% 53 18 CCDC62  0% 54 4 ADAM2  0% PANCREATIC 1 171 CCDC110 100%  2 181 MSLN 96% 3 130 SPAG1 93% 4 36 EpCAM 85% 5 174 DKK1 84% 6 140 Survivin 83% 7 159 WT1 72% 8 111 PIWIL1 71% 9 179 KIF20A 63% 10 1 5T4 62% 11 31 DBPC 60% 12 172 CEA 60% 13 63 KOC1 54% 14 115 PLAC1 44% 15 64 KU-CT-1 33% 16 123 SCP-1 31% 17 27 CTCFL 29% 18 69 MAGE-A1 27% 19 170 CASC5 27% 20 178 hTERT 21% 21 138 SSX-4 21% 22 46 GAGE-2 17% 23 74 MAGE-A3 11% 24 65 Lage-1  7% 25 136 SSX-2  4% 26 98 NY-ESO-1  4% 27 75 MAGE-A4  2% 28 70 MAGE-A10  1% 29 137 SSX-3  0% 30 135 SSX-1  0% 31 132 SPAN-Xc  0% 32 85 MAGE-C1  0% BRAIN 1 166 ZNF165 100%  2 109 PBK 100%  3 178 hTERT 100%  4 175 EZH2 100%  5 37 EPHA2 95% 6 61 IL13RA2 95% 7 157 TYR 91% 8 140 Survivin 87% 9 54 gp100 85% 10 71 MAGE-A1l 85% 11 154 TSGA10 83% 12 44 FTHL17 82% 13 159 WT1 81% 14 111 PIWIL1 76% 15 112 PIWIL2 64% 16 165 XAGE-3 60% 17 131 SPAG9 60% 18 128 SOX-6 60% 19 179 KIF20A 58% 20 116 PRAME 56% 21 3 ACTL8 54% 22 1 5T4 50% 23 103 O1P5 48% 24 186 SPINLW1 47% 25 74 MAGE-A3 42% 26 45 GAGE-1 42% 27 69 MAGE-A1 41% 28 63 KOC1 38% 29 55 HAGE 38% 30 29 CXorf48 35% 31 86 MAGE-C2 34% 32 108 PASD1 31% 33 73 MAGE-A2 28% 34 127 SLCO6A1 19% 35 160 XAGE-1 18% 36 95 NXF2 18% 37 36 EpCAM 16% 38 123 SCP-1 14% 39 129 SP17 13% 40 85 MAGE-C1 13% 41 134 SPO11 12% 42 75 MAGE-A4 11% 43 59 HOM-TES-85 10% 44 27 CTCFL  9% 45 39 FAM46D  8% 46 84 MAGE-B6  6% 47 136 SSX-2  4% 48 138 SSX-4  4% 49 98 NY-ESO-1  4% 50 65 Lage-1  2% 51 153 TRAG-3  0% 52 152 TPTE  0% 53 187 SSX-7  0% 54 139 SSX-5  0% 55 137 SSX-3  0% 56 135 SSX-1  0% 57 121 SAGE1  0% 58 87 MART1  0% 59 83 MAGE-B4  0% 60 81 MAGE-B2  0% 61 80 MAGE-B1  0% 62 30 CXorf61  0% 63 21 CT45  0% 64 14 BRDT  0% 65 80 MAGE-B1  0% 66 30 CXorf61  0% 67 21 CT45  0% 68 14 BRDT  0% HCC 1 19 CDCA1 100%  2 129 SP17 87% 3 159 WT1 86% 4 2 ACRBP 70% 5 135 SSX-1 69% 6 63 KOC1 66% 7 109 PBK 64% 8 81 MAGE-B2 61% 9 132 SPAN-Xc 60% 10 146 TEKT5 60% 11 60 IGFS11 60% 12 69 MAGE-A1 56% 13 27 CTCFL 55% 14 140 Survivin 54% 15 166 ZNF165 52% 16 131 SPAG9 52% 17 171 CCDC110 50% 18 7 AKAP-3 50% 19 40 FATE1 49% 20 138 SSX-4 48% 21 80 MAGE-B1 47% 22 136 SSX-2 46% 23 78 MAGE-A8 45% 24 36 EpCAM 41% 25 115 PLAC1 41% 26 111 PIWIL1 40% 27 31 DBPC 40% 28 16 CAGE1 39% 29 152 TPTE 39% 30 86 MAGE-C2 37% 31 139 SSX-5 37% 32 65 Lage-1 36% 33 77 MAGE-A6 36% 34 72 MAGE-A12 36% 35 71 MAGE-A11 36% 36 156 TSPY1 35% 37 74 MAGE-A3 34% 38 160 XAGE-1 33% 39 62 JARID1B 29% 40 153 TRAG-3 26% 41 123 SCP-1 25% 42 73 MAGE-A2 25% 43 29 CXorf48 25% 44 154 TSGA10 20% 45 85 MAGE-C1 20% 46 59 HOM-TES-85 19% 47 98 NY-ESO-1 17% 48 70 MAGE-A10 15% 49 188 TDRD4 14% 50 130 SPAG1 11% 51 75 MAGE-A4  7% 52 79 MAGE-A9  5% 53 18 CCDC62  0% THYROID 1 159 WT1 97% 2 112 PIWIL2 88% 3 36 EpCAM 83% 4 131 SPAG9 78% 5 63 KOC1 65% 6 116 PRAME 60% 7 140 Survivin 53% 8 108 PASD1 25% 9 66 LDHC 25% 10 85 MAGE-C1 22% 11 74 MAGE-A3 22% 12 95 NXF2 20% 13 55 HAGE 20% 14 69 MAGE-A1 17% 15 51 GASZ 13% 16 129 SP17 10% 17 73 MAGE-A2  9% 18 39 FAM46D  8% 19 136 SSX-2  8% 20 98 NY-ESO-1  7% 21 65 Lage-1  4% 22 70 MAGE-A10  2% 23 157 TYR  0% 24 149 TEX15  0% 25 145 TDRD1  0% 26 142 TAF7L  0% 27 139 SSX-5  0% 28 138 SSX-4  0% 29 137 SSX-3  0% 30 135 SSX-1  0% 31 134 SPO11  0% 32 123 SCP-1  0% 33 121 SAGE1  0% 34 119 RAGE-1  0% 35 92 NKX3.1  0% 36 88 MORC1  0% 37 87 MART1  0% 38 86 MAGE-C2  0% 39 75 MAGE-A4  0% 40 44 FTHL17  0% 41 33 DKKL1  0% 42 20 CRISP2  0% 43 1 5T4  0% 44 1 5T4  0% LUNG 1 179 KIF20A 95% 2 173 CEP55 94% 3 32 DCAF12 89% 4 19 CDCA1 85% 5 36 EpCAM 78% 6 130 SPAG1 71% 7 192 ZNF645 68% 8 115 PLAC1 68% 9 112 PIWIL2 66% 10 116 PRAME 63% 11 63 KOC1 62% 12 140 Survivin 59% 13 131 SPAG9 56% 14 62 JARID1B 55% 15 153 TRAG-3 54% 16 77 MAGE-A6 51% 17 39 FAM46D 50% 18 171 CCDC110 50% 19 22 CT46 47% 20 7 AKAP-3 46% 21 81 MAGE-B2 43% 22 161 XAGE-1b 43% 23 185 SPAG8 43% 24 69 MAGE-A1 42% 25 170 CASC5 41% 26 73 MAGE-A2 40% 27 177 HSPB9 40% 28 93 NLRP4 38% 29 64 KU-CT-1 38% 30 14 BRDT 37% 31 74 MAGE-A3 37% 32 152 TPTE 36% 33 27 CTCFL 36% 34 30 CXorf61 34% 35 55 HAGE 32% 36 21 CT45 32% 37 150 THEG 31% 38 158 VCX 31% 39 72 MAGE-A12 31% 40 31 DBPC 30% 41 35 DPPA2 30% 42 20 CRISP2 29% 43 184 SPAG6 29% 44 108 PASD1 29% 45 66 LDHC 29% 46 51 GASZ 29% 47 65 Lage-1 28% 48 42 FMR1NB 28% 49 75 MAGE-A4 27% 50 86 MAGE-C2 27% 51 160 XAGE-1 25% 52 44 FTHL17 25% 53 8 AKAP-4 25% 54 70 MAGE-A10 24% 55 167 COX6B2 24% 56 168 ATAD2 23% 57 166 ZNF165 21% 58 149 TEX15 21% 59 182 PTTG-1 20% 60 2 ACRBP 20% 61 85 MAGE-C1 19% 62 88 MORC1 18% 63 98 NY-ESO-1 17% 64 132 SPAN-Xc 17% 65 169 CABYR 16% 66 111 PIWIL1 15% 67 95 NXF2 15% 68 29 CXorf48 15% 69 121 SAGE1 15% 70 23 CT47 14% 71 16 CAGE1 14% 72 80 MAGE-B1 13% 73 138 SSX-4 13% 74 163 XAGE-1d 13% 75 61 IL13RA2 12% 76 33 DKKL1 12% 77 129 SP17 12% 78 141 SYCE1 11% 79 59 HOM-TES-85 11% 80 10 BAGE-1 10% 81 136 SSX-2 10% 82 146 TEKT5 10% 83 142 TAF7L  9% 84 17 CALR3  9% 85 135 SSX-1  8% 86 113 PIWIL3  7% 87 5 ADAM29  7% 88 127 SLCO6A1  7% 89 145 TDRD1  5% 90 176 HORMAD2  5% 91 139 SSX-5  4% 92 123 SCP-1  1% 93 4 ADAM2  1% 94 162 XAGE-1c  0% 95 156 TSPY1  0% 96 134 SPO11  0% 97 83 MAGE-B4  0% 98 82 MAGE-B3  0% 99 68 LIPI  0% 100 41 FBXO39  0% 101 40 FATE1  0% BLADDER 1 19 CDCA1 100%  2 89 MPHOSPH1 90% 3 112 PIWIL2 82% 4 131 SPAG9 81% 5 140 Survivin 62% 6 79 MAGE-A9 61% 7 78 MAGE-A8 57% 8 36 EpCAM 54% 9 24 CTAGE1 53% 10 25 CTAGE2 49% 11 109 PBK 43% 12 74 MAGE-A3 42% 13 154 TSGA10 38% 14 69 MAGE-A1 34% 15 98 NY-ESO-1 31% 16 65 Lage-1 30% 17 72 MAGE-A12 29% 18 145 TDRD1 29% 19 2 ACRBP 28% 20 70 MAGE-A10 28% 21 85 MAGE-C1 27% 22 75 MAGE-A4 27% 23 77 MAGE-A6 25% 24 73 MAGE-A2 25% 25 55 HAGE 24% 26 44 FTHL17 22% 27 149 TEX15 21% 28 63 KOC1 20% 29 22 CT46 20% 30 116 PRAME 19% 31 86 MAGE-C2 19% 32 95 NXF2 19% 33 136 SSX-2 13% 34 121 SAGE1 12% 35 138 SSX-4 11% 36 142 TAF7L 10% 37 132 SPAN-Xc  9% 38 135 SSX-1  7% 39 123 SCP-1  2% 40 156 TSPY1  0% 41 81 MAGE-B2  0% 42 80 MAGE-B1  0% 43 59 HOM-TES-85  0% LEUKEMIAS 1 131 SPAG9 100%  2 38 FAM133A 83% 3 26 cTAGE5 74% 4 24 CTAGE1 72% 5 85 MAGE-C1 70% 6 74 MAGE-A3 65% 7 98 NY-ESO-1 65% 8 62 JARID1B 60% 9 166 ZNF165 52% 10 65 Lage-1 49% 11 124 SCP3a 47% 12 28 CTNNA2 45% 13 86 MAGE-C2 37% 14 75 MAGE-A4 36% 15 135 SSX-1 31% 16 138 SSX-4 30% 17 139 SSX-5 24% 18 116 PRAME 23% 19 72 MAGE-A12 21% 20 69 MAGE-A1 20% 21 136 SSX-2 12% 22 156 TSPY1 12% 23 123 SCP-1 11% 24 73 MAGE-A2 11% 25 79 MAGE-A9  9% 26 68 LIPI  6% 27 4 ADAM2  6% 28 148 TEX14  5% 29 80 MAGE-B1  5% 30 105 PAGE2  4% 31 132 SPAN-Xc  4% 32 137 SSX-3  4% 33 83 MAGE-B4  3% 34 70 MAGE-A10  0% MELANOMA 1 62 JARID1B 100%  2 140 Survivin 96% 3 116 PRAME 90% 4 87 MART1 89% 5 157 TYR 87% 6 54 gp100 82% 7 132 SPAN-Xc 70% 8 77 MAGE-A6 65% 9 179 KIF20A 64% 10 151 TMEM31 63% 11 73 MAGE-A2 62% 12 74 MAGE-A3 60% 13 119 RAGE-1 60% 14 171 CCDC110 60% 15 71 MAGE-A11 54% 16 161 XAGE-1b 50% 17 72 MAGE-A12 49% 18 63 KOC1 46% 19 85 MAGE-C1 45% 20 70 MAGE-A10 45% 21 86 MAGE-C2 45% 22 108 PASD1 44% 23 17 CALR3 44% 24 66 LDHC 44% 25 163 XAGE-1d 43% 26 98 NY-ESO-1 37% 27 69 MAGE-A1 37% 28 136 SSX-2 35% 29 65 Lage-1 35% 30 75 MAGE-A4 30% 31 162 XAGE-1c 29% 32 39 FAM46D 28% 33 149 TEX15 27% 34 27 CTCFL 27% 35 10 BAGE-1 26% 36 154 TSGA10 25% 37 135 SSX-1 25% 38 76 MAGE-A5 25% 39 33 DKKL1 25% 40 11 BAGE-2 23% 41 107 PAGE5 22% 42 81 MAGE-B2 22% 43 142 TAF7L 21% 44 138 SSX-4 21% 45 80 MAGE-B1 19% 46 88 MORC1 19% 47 55 HAGE 17% 48 51 GASZ 17% 49 123 SCP-1 16% 50 164 XAGE-2 14% 51 12 BAGE-3 14% 52 164 XAGE-2 14% 53 12 BAGE-3 14% 54 79 MAGE-A9 12% 55 78 MAGE-A8 10% 56 13 BAGE-5  9% 57 95 NXF2  8% 58 160 XAGE-1  7% 59 134 SPO11  6% 60 20 CRISP2  6% 61 139 SSX-5  5% 62 121 SAGE1  5% 63 4 ADAM2  3% 64 165 XAGE-3  0% 65 145 TDRD1  0% 66 68 LIPI  0% 67 64 KU-CT-1  0% 68 44 FTHL17  0% 69 168 ATAD2  0% GASTRIC 1 140 Survivin 100%  2 35 DPPA2 100%  3 171 CCDC110 100%  4 36 EpCAM 90% 5 7 AKAP-3 89% 6 60 IGFS11 88% 7 30 CXorf61 80% 8 16 CAGE1 77% 9 111 PIWIL1 76% 10 155 TSP50 57% 11 1 5T4 52% 12 63 KOC1 52% 13 31 DBPC 50% 14 103 OIP5 48% 15 108 PASD1 44% 16 168 ATAD2 43% 17 146 TEKT5 40% 18 17 CALR3 40% 19 74 MAGE-A3 37% 20 73 MAGE-A2 31% 21 69 MAGE-A1 31% 22 70 MAGE-A10 30% 23 75 MAGE-A4 24% 24 138 SSX-4 23% 25 29 CXorf48 21% 26 116 PRAME 21% 27 123 SCP-1 14% 28 65 Lage-1 14% 29 135 SSX-1 13% 30 98 NY-ESO-1 12% 31 39 FAM46D 11% 32 153 TRAG-3 10% 33 86 MAGE-C2 10% 34 166 ZNF165  9% 35 161 XAGE-1b  9% 36 121 SAGE1  8% 37 21 CT45  8% 38 18 CCDC62  7% 39 95 NXF2  6% 40 85 MAGE-C1  6% 41 41 FBXO39  4% 42 136 SSX-2  3% 43 40 FATE1  2% 44 156 TSPY1  0% 45 152 TPTE  0% 46 139 SSX-5  0% 47 132 SPAN-Xc  0% 48 81 MAGE-B2  0% 49 80 MAGE-B2  0% 50 51 GASZ  0% 51 19 CDCA1  0% 52 2 ACRBP  0% Cervical 1 112 PIWIL2 100%  2 1 5T4 100%  3 16 CAGE1 98% 4 140 Survivin 92% 5 8 AKAP-4 86% 6 66 LDHC 83% 7 111 PIWIL1 83% 8 131 SPAG9 82% 9 63 KOC1 68% 10 129 SP17 61% 11 108 PASD1 58% 12 51 GASZ 50% 13 98 NY-ESO-1 42% 14 39 FAM46D 37% 15 36 EpCAM 36% 16 179 KIF20A 35% 17 134 SPO11 33% 18 33 DKKL1 33% 19 27 CTCFL 32% 20 65 Lage-1 26% 21 75 MAGE-A4 23% 22 138 SSX-4 20% 23 19 CDCA1 18% 24 69 MAGE-A1 17% 25 20 CRISP2 17% 26 74 MAGE-A3 16% 27 159 WT1  5% 28 136 SSX-2  4% 29 135 SSX-1  4% 30 88 MORC1  0% 31 70 MAGE-A10  0% 32 4 ADAM2  0% PROSTATE 1 115 PLAC1 100%  2 112 PIWIL2 100%  3 106 PAGE4 100%  4 62 JARID1B 100%  5 36 EpCAM 98% 6 27 CTCFL 98% 7 133 SPATA19 88% 8 19 CDCA1 85% 9 140 Survivin 83% 10 92 NKX3.1 70% 11 8 AKAP-4 65% 12 32 DCAF12 59% 13 145 TDRD1 47% 14 31 DBPC 40% 15 66 LDHC 38% 16 20 CRISP2 38% 17 90 MUC-1 34% 18 39 FAM46D 33% 19 108 PASD1 29% 20 136 SSX-2 28% 21 130 SPAG1 27% 22 94 NR6A1 25% 23 4 ADAM2 25% 24 34 DMRT1 24% 25 67 LEMD1 23% 26 77 MAGE-A6 23% 27 55 HAGE 22% 28 18 CCDC62 22% 29 98 NY-ESO-1 21% 30 73 MAGE-A2 18% 31 154 TSGA10 15% 32 74 MAGE-A3 15% 33 95 NXF2 14% 34 69 MAGE-A1 13% 35 149 TEX15 13% 36 33 DKKL1 13% 37 146 TEKT5 11% 38 129 SP17 10% 39 116 PRAME 10% 40 100 ODF2 10% 41 99 ODF1 10% 42 70 MAGE-A10 10% 43 64 KU-CT-1 10% 44 65 Lage-1  8% 45 135 SSX-1  7% 46 86 MAGE-C2  6% 47 72 MAGE-A12  5% 48 111 PIWIL1  4% 49 2 ACRBP  4% 50 H7 PRSS55  1% 51 142 TAF7L  0% 52 134 SPO11  0% 53 102 ODF4  0% 54 101 ODF3  0% 55 88 MORC1  0% 56 81 MAGE-B2  0% 57 80 MAGE-B1  0% 58 75 MAGE-A4  0% 59 63 KOC1  0% 60 44 FTHL17  0% 61 42 FMR1NB  0% 62 10 BAGE-1  0% 63 168 ATAD2  0% CRC 1 180 MCAK 100%  2 H3 PIWIL3 96% 3 67 LEMD1 94% 4 159 WT1 91% 5 31 DBPC 90% 6 155 TSP50 89% 7 36 EpCAM 88% 8 140 Survivin 87% 9 1 5T4 85% 10 7 AKAP-3 83% 11 27 CTCFL 80% 12 H2 PIWIL2 80% 13 16 CAGE1 74% 14 8 AKAP-4 74% 15 131 SPAG9 71% 16 63 KOC1 65% 17 2 ACRBP 63% 18 168 ATAD2 58% 19 130 SPAG1 55% 20 60 IGES11 55% 21 146 TEKT5 50% 22 171 CCDC110 50% 23 111 PIWIL1 48% 24 108 PASD1 44% 25 78 MAGE-A8 44% 26 35 DPPA2 44% 27 166 ZNF165 43% 28 177 HSPB9 40% 29 19 CDCA1 40% 30 41 FBXO39 39% 31 106 PAGE4 33% 32 26 cTAGE5 31% 33 97 NYD-TSPG 30% 34 115 PLAC1 27% 35 132 SPAN-Xc 24% 36 51 GASZ 22% 37 39 FAM46D 22% 38 77 MAGE-A6 22% 39 74 MAGE-A3 22% 40 40 FATE1 21% 41 24 CTAGE1 19% 42 75 MAGE-A4 18% 43 73 MAGE-A2 18% 44 29 CXorf48 17% 45 17 CALR3 16% 46 66 LDHC 15% 47 55 HAGE 15% 48 69 MAGE-A1 14% 49 65 Lage-1 13% 50 18 CCDC62 13% 51 107 PAGE5 11% 52 21 CT45 10% 53 95 NXF2  9% 54 119 RAGE-1  8% 55 76 MAGE-A5  7% 56 22 CT46  7% 57 153 TRAG-3  7% 58 72 MAGE-A12  6% 59 123 SCP-1  6% 60 SSX-2  5% 61 154 TSGA10  5% 62 86 MAGE-C2  4% 63 152 TPTE  4% 64 116 PRAME  4% 65 98 NY-ESO-1  3% 66 70 MAGE-A10  3% 67 135 SSX-1  2% 68 139 SSX-5  2% 69 85 MAGE-C1  I% 70 121 SAGE1  I% 71 149 TEX15  0% 72 145 TDRD1  0% 73 142 TAF7L  0% 74 137 SSX-3  0% 75 134 SPO11  0% 76 104 PAGE1  0% 77 88 MORC1  0% 78 81 MAGE-B2  0% 79 80 MAGE-B1  0% 80 68 LIPI  0% 81 44 FTHL17  0% 82 33 DKKL1  0% 83 20 CRISP2  0% 84 10 BAGE-1  0% 85 4 ADAM2  0% 86 10 BAGE-1  0% 87 4 ADAM2  0% LYMPHOMAS 1 123 SCP-1 39% 2 74 MAGE-A3 17% 3 138 SSX-4 16% 4 136 SSX-2 16% 5 59 HOM-TES-85 14% 6 85 MAGE-C1 13% 7 98 NY-ESO-1 11% 8 69 MAGE-A1  9% 9 135 SSX-1  6% 10 156 TSPY1  0% 11 86 MAGE-C2  0% PEDIATRIC 1 37 EPHA2 100%  2 77 MAGE-A6 80% 3 135 SSX-1 76% 4 74 MAGE-A3 76% 5 116 PRAME 75% 6 122 SART3 73% 7 138 SSX-4 67% 8 73 MAGE-A2 60% 9 61 IL13RA2 58% 10 160 XAGE-1 53% 11 136 SSX-2 44% 12 69 MAGE-A1 44% 13 98 NY-ESO-1 42% 14 75 MAGE-A4 41% 15 72 MAGE-A12 41% 16 86 MAGE-C2 40% 17 85 MAGE-C1 39% 18 70 MAGE-A10 33% 19 164 XAGE-2 14% 20 65 Lage-1  7% Kidney 1 19 CDCA1 100%  2 131 SPAG9 88% 3 17 CALR3 80% 4 66 LDHC 57% 5 36 EpCAM 55% 6 79 MAGE-A9 55% 7 111 PIWIL1 52% 8 112 PIWIL2 49% 9 107 PAGE5 44% 10 116 PRAME 40% 11 140 Survivin 40% 12 119 RAGE-1 37% 13 149 TEX15 33% 14 74 MAGE-A3 27% 15 68 LIPI 25% 16 18 CCDC62 25% 17 63 KOC1 22% 18 75 MAGE-A4 17% 19 20 CRISP2 14% 20 64 KU-CT-1 13% 21 130 SPAG1 11% 22 69 MAGE-A1 11% 23 31 DBPC 10% 24 4 ADAM2  9% 25 123 SCP-1  8% 26 73 MAGE-A2  7% 27 55 HAGE  6% 28 156 TSPY1  5% 29 121 SAGE1  5% 30 72 MAGE-A12  4% 31 98 NY-ESO-1  2% 32 136 SSX-2  2% 33 65 Lage-1  2% 34 70 MAGE-A10  1% 35 145 TDRD1  0% 36 142 TAF7L  0% 37 139 SSX-5  0% 38 138 SSX-4  0% 39 137 SSX-3  0% 40 135 SSX-1  0% 41 134 SPO11  0% 42 95 NXF2  0% 43 88 MORC1  0% 44 85 MAGE-C1  0% 45 81 MAGE-B2  0% 46 80 MAGE-B1  0% 47 77 MAGE-A6  0% 48 44 FTHL17  0% 49 42 FMR1NB  0% 50 33 DKKL1  0% 51 14 BRDT  0% 52 10 BAGE-1  0% 53 2 ACRBP  0% HEAD and NECK 1 140 Survivin 91% 2 171 CCDC110 67% 3 116 PRAME 61% 4 77 MAGE-A6 58% 5 81 MAGE-B2 45% 6 79 MAGE-A9 44% 7 75 MAGE-A4 42% 8 160 XAGE-1 40% 9 135 SSX-1 40% 10 74 MAGE-A3 40% 11 45 GAGE-1 39% 12 73 MAGE-A2 38% 13 71 MAGE-A11 37% 14 72 MAGE-A12 34% 15 63 KOC1 29% 16 138 SSX-4 29% 17 86 MAGE-C2 29% 18 29 CXorf48 27% 19 69 MAGE-A1 23% 20 145 TDRD1 22% 21 55 HAGE 20% 22 98 NY-ESO-1 20% 23 121 SAGE1 17% 24 136 SSX-2 17% 25 85 MAGE-C1 15% 26 70 MAGE-A10 12% 27 165 XAGE-3 12% 28 123 SCP-1 12% 29 103 OIP5 12% 30 18 CCDC62 12% 31 65 Lage-1 11% 32 20 CRISP2 11% 33 149 TEX15 11% 34 142 TAF7L 10% 35 44 FTHL17 10% 36 49 GAGE-7  9% 37 139 SSX-5  7% 38 130 SPAG1  7% 39 10 BAGE-1  6% 40 164 XAGE-2  6% 41 107 PAGES  6% 42 95 NXF2  5% 43 59 HOM-TES-85  4% 44 96 NY-BR-1  2% 45 152 TPTE  0% 46 146 TEKT5  0% 47 134 SPO11  0% 48 68 LIPI  0% 49 66 LDHC  0% Esophageal 1 1 5T4 100%  2 189 TTK 97% 3 159 WT1 88% 4 36 EpCAM 81% 5 129 SP17 81% 6 75 MAGE-A4 76% 7 63 KOC1 74% 8 111 PIWIL1 70% 9 77 MAGE-A6 68% 10 140 Survivin 67% 11 74 MAGE-A3 66% 12 27 CTCFL 56% 13 79 MAGE-A9 55% 14 153 TRAG-3 55% 15 73 MAGE-A2 53% 16 69 MAGE-A1 46% 17 22 CT46 35% 18 127 SLCO6A1 33% 19 65 Lage-1 31% 20 98 NY-ESO-1 31% 21 21 CT45 28% 22 70 MAGE-A10 27% 23 55 HAGE 27% 24 72 MAGE-A12 26% 25 121 SAGE1 22% 26 19 CDCA1 22% 27 18 CCDC62 21% 28 149 TEX15 20% 29 177 HSPB9 20% 30 95 NXF2 17% 31 169 CABYR 17% 32 179 KIF20A 15% 33 23 CT47 15% 34 85 MAGE-C1 12% 35 86 MAGE-C2 11% 36 145 TDRD1 10% 37 42 FMR1NB  8% 38 138 SSX-4  7% 39 10 BAGE-1  6% 40 123 SCP-1  2% 41 142 TAF7L  0% 42 136 SSX-2  0% 43 135 SSX-1  0% 44 132 SPAN-Xc  0% 45 44 FTHL17  0%

A model population was used that comprises 15,693 subjects with up to 500 male and 500 female subjects from each of a broad range of ethnicities. The full 6 HLA class I and DQ & DRB1 class II alleles is available for each subject. The number of HLA class II bindings was duplicated to simulate the full genome.

For each of the 15,693 subjects all 15mer amino acid sequences in each TSA were identified that met the following HLA-binding criteria: (i) predicted to bind to at least four HLA class II alleles of the subject (HLA class II-binding PEPI4+); and (ii) comprise a 9mer amino acid sequence that is predicted to bind to at least three HLA class I of the subject (HLA class I-binding PEPI3+).

A hotspot was identified in the amino acid sequence of each TSA, wherein the hotspot is a 20mer that comprises a 15mer that meets the HLA binding criteria for the maximum number of subjects in the 15,693 subject population. The hotspot analysis is illustrated in FIG. 15.

The hotspot analysis was repeated in a further 29 cycles, or until no more sequences meeting the HLA-binding criteria could be identified. Hotspot sequences were screened against manufacturing feasibility criteria. Any hotspot sequence that contained a cysteine residue, or that had a calculated hydrophilicity of less than 33%, was rejected and a different hotspot sequence comprising a 15mer that met the HLA binding criteria for the next highest number of subjects was selected instead.

In each cycle subjects for whom the HLA-binding criteria were met for any hotspot sequence selected in any previous cycle were excluded. In this way the hotspots that were selected maximized, for each cycle, the number of subjects in the population for whom a hotspot sequence had been selected that is predicted to induce both CD4+ and CD8+ T cell responses. The hotspot sequences selected in each cycle and the TSA of which they are a fragment are shown in Table 25. A total of 3286 hotspot sequences were selected. FIG. 16 shows the distribution of hotspot sequence selection across the 192 CTA.

TABLE 25A Hotspot Sequences and corresponding TAA Source Source Antigen(s) Antigen(s) SEQ [AA posi- SEQ [AA posi- Cy- ID tion in Cy- ID tion in cle NO Sequence Antigen] cle NO Sequence Antigen]  1    1 PTSSASSFSSSAPFLASAVS 5T4 11 1394 AESMYGDFQEAMTHLQHKLI FAM46D [34, 53] [204, 223]  1    2 VESTPMIMENIQELIRSAQE ACRBP 11 1395 VAQTSLEEFNVLEMEVMARQ FATE1 [275, 294] [121, 140]  1    3 LNWEGVQYLWSFVLENHRRE ACTL8 11 1396 KYRKLIESELSYFVIVYSVM FBXO39 [73, 92] [423, 442]  1    4 PHNFRVYSYSGTGIMKPLDQ ADAM2 11 1397 STEPGSFKVDTASNLNSGKE FSIP1 [67, 86] [35, 54]  1    5 RIVEIVVVIDNYLYIRYERN ADAM29 11 1398 LENFFRYFLALSDDKMEHAQ FTHL17 [198, 217] [49, 68]  1    6 RETFMNKFIYEIARRHPFLY AFP 11 1399 PVNSQKITLEWASPQNFTSV GASZ [155, 174] [382, 401]  1    7 DEVSFYANALTNLVIAMARK AKAP-3 11 1400 NAPLIKPKRALSAARRAGTS GATA-3 [122, 141] [298, 317]  1    8 IDDLSFYVNRLSSLVIQMAH AKAP-4 11 1401 EAFEIVVRHAKNYTNAMFKN Glypican-3 [214, 233] [113, 132]  1    9 RTKKELASALKSALSGHLET ANXA2 11 1402 QLHDPSGYLAEADLSYTWDF gp100 [78, 97] [243, 262]  1   10 ARAVFLALSAQLLQARLMKE BAGE-1 11 1403 IPEELVSMAERFKAHQQKRE HAGE [3, 22] [613, 632]  1   11 GVVFLALSAQLLQARLMKEE BAGE-2 11 1404 KQQTDIAVNWAGGLHHAKKS HDAC1 [4, 23]; [126, 145] BAGE-3 [4, 23]  1   12 GAVFLALSAQLLQARLMKEE BAGE-5 11 1405 HNLLLNYGLYRKMEIYAPHK HDAC2 [4, 23] [40, 59]  1   13 NQEYKDAYKFAADVRLMFMN BRDT 11 1406 RFHSEDYIDFLQRVSPTNMQ HDAC3 [328, 347] [60, 79]  1   14 PSNINQFAAAYFQELTMYRG CABYR 11 1407 TLVVTANRGSSPQVMSRSNG IGFS11 [30, 49] [371, 390]  1   15 KRASQLASKMHSLLALMVGL CAGE1 11 1408 IRSSYFTFQLQNIVKPLPPV IL13RA2 [608, 627] [223, 242]  1   16 QTTQNGRFYAISARFKPFSN CALR3 11 1409 RDYTLRTFGEMADAFKSDYF JARID1B [67, 86] [375, 394]  1   17 SPASELIAIQDSHSLGSSKS CCDC62 11 1410 EEIPLKILAHNNFVGRLIGK KOC1 [566, 585] [275, 294]  1   18 AKRTSRFLSGIINFIHFREA CDCA1 11 1411 GGLKKLLSFAENSTIPDIQK KU-CT-1 [114, 133] [274, 293]  1   19 EGKDPAFTALLTTQLQVQRE CRISP2 11 1412 DLQHGSLFFSTSKITSGKDY LDHC [20, 39] [64, 83]  1   20 QGPTAVRKRFFESIIKEAAR CT45 11 1413 VKNTRKVAVSLSVHIKNLLK LIPI [152, 171] [147, 166]  1   21 ATAQLQRTPMSALVFPNKIS CT46 11 1414 KVLEYVIKVSARVRFFFPSL MAGE-A1 [2, 21] [278, 297]  1   22 LDMVHSLLHRLSHNDHILIE CT47 11 1415 TSLGLTYDGMLSDVQSMPKT MAGE-A10 [124, 143] [205, 224]  1   23 GNNFIQNFYLPQNYIDQFLL CTAGE1 11 1416 SFSQDILHDKIIDLVHLLLR MAGE-A11 [22, 41] [216, 235]  1   24 FAVLFLWRSFRSVTSRLYVR CTAGE2 11 1417 APEEKIWEELSVLEASDGRE MAGE-A12 [24, 43] [216, 235]  1   25 FAVLFFLWRSFRSVRSRLYV cTAGE5 11 1418 ELVHFLLLKYRAREPVTKAE MAGE-A2 [53, 72] [115, 134]; MAGE-A3 [115, 134]  1   26 HTRFTQSGTMKIHILQKHGE CTCFL 11 1419 ESAGPPQSPQGASALPTTIS MAGE-A4 [404, 423] [58, 77]  1   27 KKNATMLYTASQAFLRHPDV CTNNA2 11 1420 GSVVGNWQYFFPVIFSKASD MAGE-A6 [214, 233] [137, 156]  1   28 NEDNIYISNSIYFSIAIVSE CXorf48 11 1421 TKAEMLESVIKNYKNHFPDI MAGE-A8 [122, 141] [134, 153]  1   29 NTGEMSSNSTALALVRPSSS CXorf61 11 1422 EPRKLLTQDWVQENYLEYRQ MAGE-A9 [27, 46] [240, 259]  1   30 PPPFFYRRRFVRGPRPPNQQ DBPC 11 1423 MLMHFILRKYKMREPIMKAD MAGE-B1 [225, 244] [114, 133]  1   31 SRVLHGYAAQQLPSLLKERE DCAF12 11 1424 FGLELNKVNPNGHTYTFIDK MAGE-B2 [64, 83] [164, 183]  1   32 NLLRGIDSLFSAPMDFRGLP DKKL1 11 1425 SKMKVLEFWAKVNKTVPSAF MAGE-B3 [63, 82] [284, 303]  1   33 IAERQRVMAAQVALRRQQAQ DMRT1 11 1426 FRKVSQRTELVFGLALKEVN MAGE-B4 [108, 127] [151, 170]  1   34 GKKIEVYLRLHRHAYPEQRQ DPPA2 11 1427 SASQKAIIFKRLSKDAVKKK MAGE-B6 [113, 132] [179, 198]  1   35 SERVRTYWIIIELKHKAREK EpCAM 11 1428 LQIPVSPSSSSTLLSLFQSF MAGE-C1 [136, 155] [233, 252]  1   36 KGWDLMQNIMNDMPIYMYSV EPHA2 11 1429 KDYFPVILKRAREFMELLFG MAGE-C2 [50, 69] [175, 194]  1   37 KRDNRVAYMNPIAMARWRGP FAM133A 11 1430 NDVLAMKRSSSLPSWKSLLN MORC1 [3, 22] [759, 778]  1   38 RRQFEFSVDSFQIVLDPMLD FAM46D 11 1431 AFTKLNNASSRSHSIFTVKI MPHOSPH1 [166, 185] [340, 359]  1   39 GENQEHLVIAEMMELGSRSR FATE1 11 1432 RRKNYGQLDIFPARDTYHPM MUC-1 [26, 45] [1187, 1206]  1   40 EHLEVKFMNPYNAVLTKKFQ FBXO39 11 1433 RAHLAKNLKLTETQVKIWFQ NKX3.1 [90, 109] [154, 173]  1   41 SGSSYFVLANGHILPNSENA FMR1NB 11 1434 EKLDAFFGFQLSQEIKQQIH NLRP4 [92, 111] [513, 532]  1   42 ISDTKDYFMSKTLGIGRLKR FSIP1 11 1435 QSYSLIHQLLSAEDLEPLGT NR6A1 [515, 534] [249, 268]  1   43 GWESGLVAMESAFHLEKNVN FTHL17 11 1436 YLKGELLRRTKRDIVDSLSA NXF2 [93, 112] [454, 473]  1   44 EEMRSHYVAQTGILWLLMNN GAGE-1 11 1437 SLVEKTPDEAASLVEGTSDK NY-BR-1 [109, 128] [263, 282]  1   45 SRGKSTYYWPRPRRYVQPPE GAGE-3 11 1438 KPAELSRGRGILIFSDFKDF NYD-TSPG [4, 23] [212, 231]  1   46 WRGRSTYYWPRPRRYVQPPE GAGE-6 11 1439 EAARRQFQSQLADLQQLPDI ODF2 [3, 22]; [583, 602] GAGE-7 [3, 22]  1   47 EKFKKAMTIGDVSLVQELLD GASZ 11 1440 LTPGPGDYFPEKSTKYVFDS ODF3 [48, 67] [99, 118]  1   48 ALSRHMSSLSHISPFSHSSH GATA-3 11 1441 PFQWRITHSFRWMAQVLASE ODF4 [396, 415] [67, 86]  1   49 EFVGEFFTDVSLYILGSDIN Glypican-3 11 1442 SVHLAWDLSRSLGAVVFSRV 0IP5 [143, 162] [90, 109]  1   50 DGGNKHFLRNQPLTFALQLH gp100 11 1443 EHGDSSAYENVKFIVNVRDI PASD1 [226, 245] [118, 137]  1   51 RLNDLQMSNFVNLKNITYLV HAGE 11 1444 GTGVNVYLMKRSPRGLSHSP PBK [375, 394] [41, 60]  1   52 KPHRIRMTHNLLLNYGLYRK HDAC1 11 1445 TEADRVIQRTNSMQQLEQWI PEPP2 [31, 50]; [399, 418] HDAC2 [32, 51]  1   53 TIFENLKMLNHAPSVQIHDV HDAC3 11 1446 KRVNTRFFAQSGGRLQNPLP PIWIL1 [361, 380] [742, 761]  1   54 KKVNFLDMSLDDIIIYKELE HOM-TES-85 11 1447 AGPIGMRMSPPAWVELKDDR PIWIL2 [21, 40] [629, 648]  1   55 LINLNVIWMVTPLSNANQPE IGFS11 11 1448 HDIVNRQKSIAGFVASTNAE PIWIL3 [52, 71] [657, 676]  1   56 PIRSSYFTFQLQNIVKPLPP IL13RA2 11 1449 LNKWYKYNHDLPARIIVYRA PIWIL4 [222, 241] [674, 693]  1   57 KLRYRYTLDDLYPMMNALKL JARID1B 11 1450 KKLKIFAMPMQDIKMILKMV PRAME [731, 750] [211, 230]  1   58 PDESWALKAIEALSGKIELH KOC1 11 1451 YSEELFPEELSVVLGTNDLT PRSS55 [45, 64] [111, 130]  1   59 IQNHDIMHAIISPLRSANTV KU-CT-1 11 1452 EENSRLLQERGVAYINADSS PSMA [435, 454] [436, 455]  1   60 PDSRLLQLHITMPFSSPMEA Lage-1 11 1453 YELIRGRRYPLSEKKIMHYM RAGE-1 [83, 102] [90, 109]  1   61 QRNVAIMKSIIPAIVHYSPD LDHC 11 1454 RPRRINMTDTGISPMSTRDP SAGE1 [111, 130] [226, 245]  1   62 SEELNIILQGNIILSTEKSK LEMD1 11 1455 AIVEAARLEKVHSLFRRQLA SART3 [67, 86] [237, 256]  1   63 QKYSAHAFQFSPRNVLWLLV LIPI 11 1456 DSDPALQKVNFLPVLEQVGN SCP-1 [12, 31] [63, 82]  1   64 VKVLEYVIKVSARVRFFFPS MAGE-A1 11 1457 DVIEGKTAVIEKRRKKRSSA SCP3a [277, 296] [41, 60]  1   65 DDTTAMASASSSATGSFSYP MAGE-A10 11 1458 VAFPPRAKDGLVVFGKNSAR SCRN1 [349, 368] [11, 30]  1   66 DPTSHSYVLVTSLNLSYDGI MAGE-A11 11 1459 EAQNKELKTQVALSSETPRT se57-1 [283, 302] [289, 308]  1   67 ALSRKMAELVHFLLLKYRAR MAGE-A12 11 1460 SSGISFQSKYLSFFILGQTV SLCO6A1 [108, 127] [219, 238]  1   68 GREDSVFAHPRKLLMQDLVQ MAGE-A2 11 1461 MITQLISLREQLLAAHDEQK SOX-6 [233, 252] [194, 213]  1   69 FPVIFSKASSSLQLVFGIEL MAGE-A3 11 1462 DLNKVILLDPSIIEAKMELE SPAG1 [147, 166] [713, 732]  1   70 VNARVRIAYPSLREAALLEE MAGE-A4 11 1463 GGSGAVMSERVSGLAGSIYR SPAG9 [294, 313] [14, 33]  1   71 KSPQGASAIPTAIDFTLWRQ MAGE-A5 11 1464 FLPITSSDIDVVESEAVSVL SPATA19 [63, 82] [20, 39]  1   72 KKLLTQYFVQENYLEYRQVP MAGE-A6 11 1465 ILSTSKGLIAGNLRYIEEDG SPO11 [243, 262] [170, 189]  1   73 RAPEEAIWEALSVMGLYDGR MAGE-A8 11 1466 YMKRKYEAMTKLGFKAILPS SSX-3 [218, 237] [50, 69]  1   74 PAQLEFMFQEALKLKVAELV MAGE-A9 11 1467 QKVGSLEPRVEVLINRINEV SYCE1 [97, 116] [44, 63]  1   75 DNPSGHTYTLVSKLNLTNDG MAGE-B1 11 1468 TVRNLARSQSVKMKDKLKID TAF7L [168, 187] [113, 132]  1   76 SSDPPRFQFLWGPRAYAETS MAGE-B2 11 1469 EVHIVRNGGTSMMVENMAVR TAG-1 [265, 284] [997, 1016]  1   77 LIMKTNMLVQFLMEMYKMKK MAGE-B3 11 1470 KLVENSLSISNPGLFTSLGP TDRD1 [111, 130] [144, 163]  1   78 SSSVLRDTASSSLAFGIPQE MAGE-B4 11 1471 TLKLRLRETQDTLQLLVMTK TEKT5 [42, 61] [428, 447]  1   79 PQILNRTSQHLVVAFGVELK MAGE-B6 11 1472 SREFTNAYKLPLAVGPPSLN TEX14 [234, 253] [781, 800]  1   80 RPVSSFFSYTLASLLQSSHE MAGE-C1 11 1473 FRQPIFSQYASHQPLPQATY TEX15 [777, 796] [2742, 2761]  1   81 ATVMASESLSVMSSNVSFSE MAGE-C2 11 1474 PSSRILQLSKPKAPATLLEE THEG [354, 373] [264, 283]  1   82 EPVVPNAPPAYEKLSAEQSP MART1 11 1475 DLKIQIEMEKKVVFSTISLG TPTE [94, 113] [430, 449]  1   83 RSQAGMFIYSNNRLIKMHEK MORC1 11 1476 KVLKSERDKIFLLYEQAQEE TSGA10 [363, 382] [55, 74]  1   84 EIYNEYIYDLFVPVSSKFQK MPHOSPH1 11 1477 GAGEAPGALSTADPADQSVQ TSP50 [277, 296] [39, 58]  1   85 GVSFFFLSFHISNLQFNSSL MUC-1 11 1478 YEVEAYRRRHHNSSLNFFNW TSPY1 [1039, 1058] [241, 260]  1   86 VQPTQKQQKHRLFHWQANSE NA17-A 11 1479 YRNGDFFISSKDLGYDYSYL TYR [45, 64] [433, 452]  1   87 EEAFSRASLVSVYNSYPYYP NKX3.1 11 1480 ERRFSRSDQLKRHQRRHTGV WT1 [202, 221] [361, 380]  1   88 SLLRKKMLPEASLLIAIKPV NLRP4 11 1481 FINHQIIYAGEKNHQYGKSF ZNF165 [263, 282] [307, 326]  1   89 IERLIYLYHKFHQLKVSNEE NR6A1 12 1482 LADLSPFAFSGSNASVSAPS 5T4 [369, 388] [154, 173]  1   90 QSQGSVLAFTRTFIATPGSS NXF2 12 1483 PKFHSESLSSNPSSFAPRVR ACRBP [510, 529] [254, 273]  1   91 KRASQYSGQLKVLIAENTML NY-BR-1 12 1484 WLGASVVAHLSTYQSEWMSR ACTL8 [1103, 1122] [338, 357]  1   92 WTLSRFFSYLRSWDVDDLLL NYD-TSPG 12 1485 WRVLFLLSGLGGLRMDSNFD ADAM2 [322, 341] [2, 21]  1   93 KEFTVSGNILTIRLTAADHR NY-ESO-1 12 1486 VIDNYLYIRYERNDSKLLED ADAM29 [124, 143] [205, 224]  1   94 DEKRELAKLARTTNRILASS ODF1 12 1487 KGEEELQKYIQESQALAKRS AFP [100, 119] [396, 415]  1   95 ADKDLYVAEALSTLESWRSR ODF2 12 1488 QKATDIMDAMLRKLYNVMFA AKAP-3 [428, 447] [368, 387]  1   96 EKSTKYVFDSAPSHSISART ODF3 12 1489 LAKDLIVSALKLIQYHLTQQ AKAP-4 [109, 128] [540, 559]  1   97 NSPLPFQWRITHSFRWMAQV ODF4 12 1490 VPHLQKVFDRYKSYSPYDML ANXA2 [63, 82] [222, 241]  1   98 ADSVHLAWDLSRSLGAVVFS OIP5 12 1491 YNPPDHEVVTMARMLQDVFE BRDT [88, 107] [351, 370]  1   99 MGFLRRLIYRRRPMIYVESS PAGE1 12 1492 DQAPEVTLQADIEVMSTVHI CABYR [1, 20] [274, 293]  1  100 GPDMEAFQQELALLKIEDEP PAGE2 12 1493 KEAQEQEFLSLQEEFQKLEK CAGE1 [65, 84] [477, 496]  1  101 RGDGQEAPDVVAFVAPGESQ PAGE4 12 1494 SGKINRHEHYFNQFHRRNEL CALR3 [12, 31] [365, 384]  1  102 GTDVEAFQQELALLKIEDAP PAGE5 12 1495 EKQDYKQKLKALKIEVNKLK CCDC62 [84, 103] [204, 223]  1  103 NHPVRFLQAQPIVPVQRAAE PASD1 12 1496 EEQEEFKQLSDGIQELQQSL CDCA1 [599, 618] [175, 194]  1  104 RYKASQDPFPAAIILKVALN PBK 12 1497 ALQKKYLRMVVLAVYTNPED CT46 [130, 149] [88, 107]  1  105 KEMELWMKAMLDAALVQTEP PEPP2 12 1498 LSGPAELRSFNMPSLDKMDG CTAGE2 [254, 273] [603, 622]; cTAGE5 [634, 653]  1  106 QYAHKLAFLVGQSIHREPNL PIWIL1 12 1499 AEAKMTFKIFQMNEERLKIA cTAGE5 [833, 852] [188, 207]  1  107 RSVVGFVASINLTLTKWYSR PIWIL2 12 1500 FRQKQLLNAHFRKYHDANFI CTCFL [755, 774] [523, 542]  1  108 QKSIAGFVASTNAELTKWYS PIWIL3 12 1501 QPFEENEFIDASRLVYDGVR CTNNA2 [663, 682] [602, 621]  1  109 RTLNKQGMMMSIATKIAMQM PIWIL4 12 1502 GDYGMIDESIYFSSDVVTGN CXorf48 [580, 599] [48, 67]  1  110 KAVSQDMVIYSTEIHYSSKG PLAC1 12 1503 SRDILNNFPHSIARQKRILV CXorf61 [85, 104] [63, 82]  1  111 RLDQLLRHVMNPLETLSITN PRAME 12 1504 AIKRNNPRKFLRSVGDGETV DBPC [312, 331] [125, 144]  1  112 KNTPGIYTSLVNYNLWIEKV PRSS55 12 1505 GAVSLDGYFHLWKAENTLSK DCAF12 [279, 298] [268, 287]  1  113 SNPIVLRMMNDQLMFLERAF PSMA 12 1506 DAQESSLGLTGLQSLLQGFS DKKL1 [656, 675] [37, 56]  1  114 TKFKQSRAMNFDFPFKKGSG RAGE-1 12 1507 GISHPIPLPSAAELLVKREN DMRT1 [227, 246] [132, 151]  1  115 GSTGFSSRLAATQDLPFIHQ RCAS1 12 1508 LVISRKKRMAKYEKAEIKEM EpCAM [123, 142] [286, 305]  1  116 PPAFINMAATGVSSMSTRDQ SAGE1 12 1509 GVPFRTVSEWLESIKMQQYT EPHA2 [602, 621] [903, 922]  1  117 KDSITVFVSNLPYSMQEPDT SART3 12 1510 MSEIRFTNLTWDQVITLDQV FAM46D [701, 720] [1, 20]  1  118 NNNIEKMITAFEELRVQAEN SCP-1 12 1511 AVNRRLRALEEQGATWRHRE FATE1 [215, 234] [143, 162]  1  119 KLNQEYSQQFLTLFQQWDLD SCP3a 12 1512 VESAVWYVKKFGRYLEHLEV FBXO39 [120, 139] [75, 94]  1  120 RRHELYKAHEWARAIIESDQ SCRN1 12 1513 KHNQDFIKRNIELAKESRNP FSIP1 [343, 362] [249, 268]  1  121 TSELKTEGVSPYLMLIRLRK se57-1 12 1514 TSYLYLSMAFYFNRDDVALE FTHL17 [316, 335] [31, 50]  1  122 QSSGISFQSKYLSFFILGQT SLCO6A1 12 1515 SKDQQKILAALKELQVEEIQ GASZ [218, 237] [320, 339]  1  123 KERQLSTMITQLISLREQLL SOX-6 12 1516 GPLSVYPPASSSSLSGGHAS GATA-3 [187, 206] [128, 147]  1  124 PDNIPAFAAAYFESLLEKRE SP17 12 1517 EELVNGMYRIYDMENVLLGL Glypican-3 [32, 51] [304, 323]  1  125 EKDPSLVYQHLLYLSKAERF SPAG1 12 1518 QVSLKVSNDGPTLIGANASF gp100 [863, 882] [65, 84]  1  126 RDAVKFFVAVPGQVISPQSS SPAG9 12 1519 TRNDWRVASELINILERANQ HAGE [1223, 1242] [592, 611]  1  127 KKMKTSESSTILVVRYRRNV SPAN-Xc 12 1520 QLSTGGSVASAVKLNKQQTD HDAC1 [40, 59] [111, 130]  1  128 TRIQFIRWSHTRIFQVPSEM SPATA19 12 1521 SDEYIKFLRSIRPDNMSEYS HDAC2 [112, 131] [70, 89]  1  129 AEIQALTFLSSDYLSRVYLP SPO11 12 1522 EDYIDFLQRVSPTNMQGFTK HDAC3 [368, 387] [64, 83]  1  130 RIQVEHPQMTFGRLHRIIPK SSX-1 12 1523 TESVSHFSDLGQSFSFHSGN IGFS11 [91, 110] [332, 351]  1  131 VERPQMTFGRLQGISPKIMP SSX-2 12 1524 LVTATVENETYTLKTTNETR IL13RA2 [94, 113] [283, 302]  1  132 QRPQMTFGRLQGIFPKIMPK SSX-3 12 1525 PARRAKRMRAEAMNIKIEPE JARID1B [95, 114] [227, 246]  1  133 SEKIVYVYMKLNYEVMTKLG SSX-4 12 1526 KKIRESYENDIASMNLQAHL KOC1 [43, 62] [345, 364]  1  134 NQVEHPQMTFGRLQGIFPKI SSX-5 12 1527 KSDNEEVREAAALALANLTT KU-CT-1 [92, 111] [366, 385]  1  135 EFEETAKKVRRAIEQLAAMD Survivin 12 1528 AIGLSVMDLVGSILKNLRRV LDHC [123, 142] [251, 270]  1  136 LFLRSQEAAATVQLFQEEHR SYCE1 12 1529 KPPYSRLDYTDAKFVDVIHS LIPI [229, 248] [213, 232]  1  137 ESGQYRANEGTSSIVMEIQK TAF7L 12 1530 IFGKASESLQLVFGIDVKEA MAGE-A1 [377, 396] [143, 162]  1  138 GADAQYFVYSNESVRPYTPF TAG-1 12 1531 SSPSVVASLPLDQSDEGSSS MAGE-A10 [765, 784] [92, 111]  1  139 RGLPASTLSRLSNRLLLRLE TAG-2a 12 1532 QNWVQEKYLVYRQVPGTDPA MAGE-A11 [35, 54] [361, 380]  1  140 SSEVLEYMNQLSASLKETYA TDRD1 12 1533 QEGPSTFPDLETSFQVALSR MAGE-A12 [285, 304] [92, 111]  1  141 LPGYRYLNSWRPSLFYKIAN TEKT5 12 1534 DLESEFQAAISRKMVELVHF MAGE-A2 [41, 60] [100, 119]  1  142 LSQFWEFSETTASTVSTTLH TEX101 12 1535 VGNWQYFFPVIFSKASSSLQ MAGE-A3 [120, 139] [140, 159]  1  143 RLLKAGVISAQNIYSFGFGK TEX14 12 1536 LEHVVRVNARVRIAYPSLRE MAGE-A4 [193, 212] [288, 307]  1  144 GKINQNYASIITEAFPKPKD TEX15 12 1537 VGNWQYFFPVIFSKASDSLQ MAGE-A6 [368, 387] [140, 159]  1  145 VSRAAQMAVPSSRILQLSKP THEG 12 1538 AASSSSTLIMGTLEEVTDSG MAGE-A8 [255, 274] [38, 57]  1  146 SSDRTINLLEVLPWPTEWIF TMEM31 12 1539 EEPSSSVDPAQLEFMFQEAL MAGE-A9 [63, 82] [89, 108]  1  147 DLDLTYVTERIIAMSFPSSG TPTE 12 1540 ETTKMKVLEFLAKMNGATPR MAGE-B1 [236, 255] [279, 298]  1  148 RKDQGFLEKEFYHKTNIKMR TRAG-3 12 1541 AETSKMKVLEFLAKVNGTTP MAGE-B2 [14, 33] [281, 300]  1  149 EELQKVQFEKVSALADLSST TSGA10 12 1542 LKKPQRALSTTTSVDVSYKK MAGE-B3 [492, 511] [62, 81]  1  150 VIMHSRYRAQRFWSWVGQAN TSP50 12 1543 TTAMTSAYSRATSSSSSQPM MAGE-B4 [186, 205] [327, 346]  1  151 KIMLFFRSNPYFQNKVITKE TSPY1 12 1544 RTSQHLVVAFGVELKEMDSS MAGE-B6 [200, 219] [239, 258]  1  152 HNRESYMVPFIPLYRNGDFF TYR 12 1545 PLQSPVISFSSSTSLSPFSE MAGE-C1 [420, 439] [850, 869]  1  153 RGKKGAATKMAAVTAPEAES VCX 12 1546 EEEEEASSASSTLYLVFSPS MAGE-C2 [50, 69] [34, 53]  1  154 NKRYFKLSHLQMHSRKHTGE WT1 12 1547 ERSQRSQIANITTVWRAQPT MORC1 [331, 350] [668, 687]  1  155 VGILHLGSRQKKIRIQLRSQ XAGE-1 12 1548 VQQIQSNYDIAIAELHVQKS MPHOSPH1 [13, 32]; [933, 952] XAGE-1b [13, 32]; XAGE-1c [92, 111]  1  156 SRQKKIRIQLRSQVLGREMR XAGE-1d 12 1549 DVSVSDVPFPFSAQSGAGVP MUC-1 [20, 39] [1138, 1157]  1  157 MSWRGRSTYRPRPRRSLQPP XAGE-2 12 1550 LSSELGDLEKHSSLPALKEE NKX3.1 [1, 20] [184, 203]  1  158 MIWRGRSTYRPRPRRSVPPP XAGE-3 12 1551 YISEMLLRNKSVRYLDLSAN NLRP4 [1, 20] [798, 817]  1  159 KSFKSPKLAKHAAVFSGDKT ZNF165 12 1552 EELHRFSDEGMEVIERLIYL NR6A1 [324, 343] [356, 375]  2  160 ELASNHFLYLPRDVLAQLPS 5T4 12 1553 VTIPYGIKYDKAWLMNSIQS NXF2 [216, 235] [127, 146]  2  161 SHKTPFVSPLLASQSLSIGN ACRBP 12 1554 ESLDQKLFQLQSKNMWLQQQ NY-BR-1 [399, 418] [1261, 1280]  2  162 NFSVWLGASVVAHLSTYQSE ACTL8 12 1555 YWRTSSFRMTEHNSVKPWQQ NYD-TSPG [334, 353] [124, 143]  2  163 EANELLHTFLRWKTSYLVLR ADAM2 12 1556 ELSKSMESMRGHLQAQLRSK ODF2 [242, 261] [337, 356]  2  164 IKVKKLLFSKHLPVFTYTDQ ADAM29 12 1557 PINIWIFELERNVSIPIGWS ODF4 [67, 86] [163, 182]  2  165 SGEKNIFLASFVHEYSRRHP AFP 12 1558 GGTERAIDQASFTTSMEWDT OIP5 [344, 363] [22, 41]  2  166 SEGIMTYANSVVSDMMVSIM AKAP-3 12 1559 GPPDPQAFQGPAAYQPDQMR PASD1 [282, 301] [735, 754]  2  167 DQVNIDYLMNRPQNLRLEMT AKAP-4 12 1560 PINMEELDESYQKVIELFSV PBK [161, 180] [280, 299]  2  168 STPPSAYGSVKAYTNFDAER ANXA2 12 1561 YSPQRTYRSEVSSPIQRGDV PEPP2 [18, 37] [556, 575]  2  169 QLLQARLMKEESPVVSWRLE BAGE-1 12 1562 APLISVKPLDNWLLIYTRRN PIWIL1 [13, 32]; [485, 504] BAGE-2 [13, 32]; BAGE-3 [13, 32]; BAGE-5 [13, 32]  2  170 TALDVHFVSTLEPLSNAVKR BAGE-2 12 1563 DIPLKQLMVIGMDVYHDPSR PIWIL2 [37, 56]; [733, 752] BAGE-3 [37, 56]  2  171 KEMLAKKHFSYAWPFYNPVD BRDT 12 1564 KRINTRFFLKHGSNFQNPPP PIWIL3 [281, 300] [763, 782]  2  172 AKYSSVYMEAEATALLSDTS CABYR 12 1565 DYPKIIKVQENPAAFVRAIQ PIWIL4 [372, 391] [518, 537]  2  173 ENHPKSMTMMPALFKENRND CAGE1 12 1566 DVMHLSQSPSVSQLSVLSLS PRAME [756, 775] [338, 357]  2  174 FSNKGKTLVIQYTVKHEQKM CALR3 12 1567 FKRANMDNDIALLLLASPIK PRSS55 [84, 103] [148, 167]  2  175 TVFGEKSVITLSSIFTKDLV CCDC62 12 1568 PRRTILFASWDAEEFGLLGS PSMA [385, 404] [412, 431]  2  176 TLSFPRYNVAEIVIHIRNKI CDCA1 12 1569 IGEGTFSEVMKMQSLRDGNY RAGE-1 [3, 22] [10, 29]  2  177 PTSWSSAIQSWYDEILDFVY CRISP2 12 1570 RKQDNVLSNVLSGLINMAGA SAGE1 [104, 123] [451, 470]  2  178 SPSYQKRQRMALLARKQGAG CT45 12 1571 PIPESVIQNYNKALQQLEKY SART3 [24, 43] [276, 295]  2  179 DALQKKYLRMVVLAVYTNPE CT46 12 1572 FVPPRSSSSQVSAVKPQTLG SCP-1 [87, 106] [10, 29]  2  180 EEGNEAANFDLAVVARRYPA CT47 12 1573 RKRLEMYTKASLKTSNQKIE SCP3a [97, 116] [89, 108]  2  181 FLFGGNNFIQNFYLPQNYID CTAGE1 12 1574 RPRDEVQEVVYFSAADHEPE SCRN1 [18, 37] [30, 49]  2  182 ALKKLIHAAKLNASLKTLEG CTAGE2 12 1575 NLVQRMEKEKRTLLERKLSL se57-1 [282, 301]; [193, 212] cTAGE5 [312, 331]  2  183 MFTSSRMSSFNRHMKTHTSE CTCFL 12 1576 IRFGGFRKRKKAKSSVSKKP SLCO6A1 [263, 282] [59, 78]  2  184 SSDSSMLDSATSLIQAAKNL CTNNA2 12 1577 QAFPDMHNSNISKILGSRWK SOX-6 [853, 872] [641, 660]  2  185 RNGVIDYTIFFTLDSVKLPD CXorf48 12 1578 EKHLQALAPESRALRKDKPA SPAG1 [188, 207] [62, 81]  2  186 DLSRDILNNFPHSIARQKRI CXorf61 12 1579 GLAGSIYREFERLIGRYDEE SPAG9 [61, 80] [26, 45]  2  187 DKPVLAIQVLGTVKWFNVRN DBPC 12 1580 IQDIITSLARNEAPAFTIDN SPO11 [86, 105] [55, 74]  2  188 GQGSLLFYDIRAQRFLEERL DCAF12 12 1581 KGERPGAAHQAGPDVLIGQE SYCE1 [358, 377] [313, 332]  2  189 TELHPRVAFWIIKLPRRRSH DKKL1 12 1582 VIESLRTLDKKTFYKTADIS TAF7L [161, 180] [159, 178]  2  190 SDSTYYSSFYQPSLFPYYNN DMRT1 12 1583 PGNISWTFSSSSLSIKWDPV TAG-1 [205, 224] [916, 935]  2  191 MLASWARIAARAVQPKALNS DPPA2 12 1584 SLSISNPGLFTSLGPPLRST TDRD1 [185, 204] [149, 168]  2  192 PGQTLIYYVDEKAPEFSMQG EpCAM 12 1585 QFTDTNLAFNARISEVTDVK TEKT5 [244, 263] [334, 353]  2  193 DLAPDTTYLVQVQALTQEGQ EPHA2 12 1586 KILKKGIYVDAVNSLGQTAL TEX14 [496, 515] [41, 60]  2  194 EKEKDVASLSKKAKKSYPDD FAM133A 12 1587 SNAAIQIASATMPALSLNND TEX15 [168, 187] [598, 617]  2  195 KNLELKFVSSLRRQFEFSVD FAM46D 12 1588 SRRVEELSRPKRFYLEYYNN THEG [155, 174] [191, 210]  2  196 EVMRRQLYAVNARLRALEEQ FATE1 12 1589 SSGRQSFYRNPIKEVVRFLD TPTE [135, 154] [253, 272]  2  197 NLKVNFFFERIMKYERLARI FBXO39 12 1590 TERDVAFTDLRRMTTERDSL TSGA10 [282, 301] [103, 122]  2  198 QSLEEDSALEALLNFFFPTT FMR1NB 12 1591 FWSWVGQANDIGLLKLKQEL TSP50 [114, 133] [197, 216]  2  199 KLQELSAASPTISSFSPRLE FSIP1 12 1592 KVITKEYLVNITEYRASHST TSPY1 [326, 345] [214, 233]  2  200 LELYTSYLYLSMAFYFNRDD FTHL17 12 1593 ASPLTGIADASQSSMHNALH TYR [27, 46] [348, 367]  2  201 MSWAGASTYRPRRRYVEPP GAGE-1 12 1594 AQFPNHSFKHEDPMGQQGSL WT1 [1, 20]; [169, 188] GAGE-2 [1, 20]; GAGE-8 [1, 20]  2  202 MNLSRGKSTYYWPRPRRYVQ GAGE-3 12 1595 DQSFKWNSDFINHQIIYAGE ZNF165 [1, 20] [298, 317]  2  203 MSWRGRSTYYWPRPRRYVQP GAGE-6 13 1596 GYHYRYEINADPRLTNLSSN 5T4 [1, 20]; [398, 417] GAGE-7 [1, 20]  2  204 DREKDHIFSSYTAFGDLEVF GASZ 13 1597 SGWLQTEFLSFQDGDFPTKI ACRBP [263, 282] [457, 476]  2  205 GLYYKLHNINRPLTMKKEGI GATA-3 13 1598 GSRVELTPMQRVAPEMFFSP ACTL8 [343, 362] [243, 262]  2  206 ELIQKLKSFISFYSALPGYI Glypican-3 13 1599 VNLMQKNFLPHNFRVYSYSG ADAM2 [390, 409] [58, 77]  2  207 VLMAVVLASLIYRRRLMKQD gp100 13 1600 FQGILQINDFAYEIKPLAFS ADAM29 [605, 624] [123, 142]  2  208 SATWPHSVHRLAQSYLKEPM HAGE 13 1601 LIFLLNFTESRTLHRNEYGI AFP [427, 446] [9, 28]  2  209 GAGKGKYYAVNYPLRDGIDD HDAC1 13 1602 PPSKKSFFYKEVFESRNGDY AKAP-3 [215, 234] [234, 253]  2  210 GAGKGKYYAVNFPMRDGIDD HDAC2 13 1603 SSGKPIPASVVLKRVLLRHT AKAP-4 [216, 235] [356, 375]  2  211 QEAFYLTDRVMTVSFHKYGN HDAC3 13 1604 VNILTNRSNAQRQDIAFAYQ ANXA2 [178, 197] [57, 76]  2  212 MASFRKLTLSEKVPPNHPSR HOM-TES-85 13 1605 PDSQQQYNVVKTVKVTEQLR BRDT [1, 20] [255, 274]  2  213 QVQGTVTIRNISALSSGLYQ IGFS11 13 1606 KTTSGMSKKSVESVKLAQLE CABYR [195, 214] [350, 369]  2  214 QLQNIVKPLPPVYLTFTRES IL13RA2 13 1607 SNLYLEKRVKELQMKITKQQ CAGE1 [231, 250] [329, 348]  2  215 RGHYERILNPYNLFLSGDSL JARID1B 13 1608 KMKNTDYLTQYDLSEFENIG CALR3 [172, 191] [279, 298]  2  216 YENDIASMNLQAHLIPGLNL KOC1 13 1609 APGHMSDVEWMSIFKPSKMQ CCDC62 [351, 370] [525, 544]  2  217 ATVLTNMAMQEPLRLNIQNH KU-CT-1 13 1610 RYNVAEIVIHIRNKILTGAD CDCA1 [419, 438] [8, 27]  2  218 GAVLKDFTVSGNLLFMSVRD Lage-1 13 1611 KTRSGKVFQNKMANGNQPVK CT46 [120, 139] [333, 352]  2  219 WAIGLSVMDLVGSILKNLRR LDHC 13 1612 SETRASLYPPTLLEGPLRLS CTAGE2 [250, 269] [498, 517]  2  220 LPSTRKLYEKKLVQLLVSPP LEMD1 13 1613 SETRAFLSPPTLLEGPLRLS cTAGE5 [27, 46] [529, 548]  2  221 AQFYNDFVNISSIGLTYFQS LIPI 13 1614 QLLAERTKEQLFFVETMSGD CTCFL [409, 428] [190, 209]  2  222 VSARVRFFFPSLREAALREE MAGE-A1 13 1615 GAIRGRAARVIHIINAEMEN CTNNA2 [286, 305] [541, 560]  2  223 LESVIRNYEDHFPLLFSEAS MAGE-A10 13 1616 GLINSNTDNNLAVYDLSRDI CXorf61 [161, 180] [47, 66]  2  224 YAGREHFLFGEPKRLLTQNW MAGE-A11 13 1617 LHKRKRLPPVKRSLVYYLKN DCAF12 [344, 363] [33, 52]  2  225 SVIRNFQDFFPVIFSKASEY MAGE-A12 13 1618 LFSAPMDFRGLPGNYHKEEN DKKL1 [138, 157] [71, 90]  2  226 PDLESEFQAAISRKMVELVH MAGE-A2 13 1619 VENTPDLVSDSTYYSSFYQP DMRT1 [99, 118] [197, 216]  2  227 VVGNWQYFFPVIFSKASSSL MAGE-A3 13 1620 YQLDPKFITSILYENNVITI EpCAM [139, 158] [174, 193]  2  228 ETSYVKVLEHVVRVNARVAI MAGE-A4 13 1621 AGMKYLANMNYVHRDLAARN EPHA2 [281, 300]; [725, 744] MAGE-A8 [283, 302]  2  229 ESVFRAALSKKVADLIHFLL MAGE-A5 13 1622 WSLISLSNNTGKNLELKFVS FAM46D [102, 121] [144, 163]  2  230 VVGNWQYFFPVIFSKASDSL MAGE-A6 13 1623 KAAGSASAKRVWNMTATRPK FATE1 [139, 158] [57, 76]  2  231 DGREHSVYWKLRKLLTQEWV MAGE-A8 13 1624 FYFKIWAFLDVSFVERILKS FBXO39 [235, 254] [369, 388]  2  232 AHAETSYEKVINYLVMLNAR MAGE-A9 13 1625 SKTLGIGRLKRPSFLDDPLY FSIP1 [276, 295] [524, 543]  2  233 TEEEIWKFMNVLGAYDGEEH MAGE-B1 13 1626 EHMTDLLKERDITLAHLLTM GASZ [216, 235] [289, 308]  2  234 QFLWGPRAYAETSKMKVLEF MAGE-B2 13 1627 YGNSVRATVQRYPPTHHGSQ GATA-3 [272, 291] [64, 83]  2  235 TNKKKVSFSSPLILGATIQK MAGE-B3 13 1628 SLQVTRIFLQALNLGIEVIN Glypican-3 [33, 52] [222, 241]  2  236 SLTRKTKMLVQFLLYKYKMK MAGE-B4 13 1629 VLPDGQVIWVNNTIINGSQV gp100 [108, 127] [96, 115]  2  237 GPRAYAETTKMRVLTVLADS MAGE-B6 13 1630 ALKSHFVGAVIGRGGSKIKN HAGE [360, 379] [73, 92]  2  238 NPASSFFSSALLSIFQSSPE MAGE-C1 13 1631 SDDYIKFLRSIRPDNMSEYS HDAC1 [130, 149] [69, 88]  2  239 SSASSTLYLVFSPSSFSTSS MAGE-C2 13 1632 QLSTGGSVAGAVKLNRQQTD HDAC2 [40, 59] [112, 131]  2  240 NAPPAYEKLSAEQSPPPYSP MART1 13 1633 NHAPSVQIHDVPADLLTYDR HDAC3 [99, 118] [370, 389]  2  241 DDPQKFAMELSIIYKYSPFK MORC1 13 1634 QPEQVILYQGGQMFDGAPRF IGFS11 [159, 178] [69, 88]  2  242 YEQANLNMANSIKFSVWVSF MPHOSPH1 13 1635 QHRAQQLLSSGNLKFVQDRV JARID1B [256, 275] [1263, 1282]  2  243 NIKFRPGSVVVQLTLAFREG MUC-1 13 1636 LENFTLKVAYIPDEMAAQQN KOC1 [1091, 1110] [144, 163]  2  244 HRLFHWQANSERADIPASLR NA17-A 13 1637 AAEADGIDPLINLLSSKRDG KU-CT-1 [54, 73] [394, 413]  2  245 PQKRSRAAFSHTQVIELERK NKX3.1 13 1638 LKDLADELALVDVALDKLKG LDHC [123, 142] [41, 60]  2  246 GINNVSFSGQSVLLFEVLFY NLRP4 13 1639 DMNVIVVDWSRGATTFIYNA LIPI [673, 692] [126, 145]  2  247 IPHLFSYSGHSPLLPQQARS NR6A1 13 1640 GEPRKLLTQDLVQEKYLEYR MAGE-A1 [226, 245] [233, 252]  2  248 QEMVQAFSAQSGMKLEWSQK NXF2 13 1641 QSETQGLEGAQAPLAVEEDA MAGE-A10 [573, 592] [19, 38]  2  249 SVVAKLLSHGAVIEVHNKAS NY-BR-1 13 1642 LLLRKYRVKGLITKAEMLGS MAGE-A11 [97, 116] [232, 251]  2  250 NAEDWNLYWRTSSFRMTEHN NYD-TSPG 13 1643 TKAEMLGSVIRNFQDFFPVI MAGE-A12 [117, 136] [131, 150]  2  251 AMPFATPMEAELARRSLAQD NY-ESO-1 13 1644 KPEEGLEARGEALGLVGAQA MAGE-A2 [93, 112] [11, 30]  2  252 LRPSLRSLERKAIRAIEDEK ODF1 13 1645 EEGPSTFPDLESEFQAALSR MAGE-A3 [83, 102] [92, 111]; MAGE-A6 [92, 111]  2  253 GDGPYSTFLTSSPIRSRSPP ODF2 13 1646 EEGVEAQEEALGLVGAQAPT MAGE-A4 [809, 828] [13, 32]  2  254 DVRVTKFKAPQYTMAARVEP ODF3 13 1647 PAHLESLFREALDEKVAELV MAGE-A8 [189, 208] [101, 120]  2  255 LGQDGRLLSSTLSLSSNRSL ODF4 13 1648 KEPVTKAEMLESVIKNYKRY MAGE-A9 [39, 58] [126, 145]  2  256 RSLGAVVFSRVTNNVVLEAP OIP5 13 1649 GEPRKFITQDLVQEKYLKYE MAGE-B1 [99, 118] [239, 258]  2  257 NDQESSQPVGSVIVQEPTEE PAGE2 13 1650 GEPWKLITKDLVQEKYLEYK MAGE-B2 [16, 35] [242, 261]  2  258 MSARVRSRSRGRGDGQEAPD PAGE4 13 1651 QSRTDPLIMKTNMLVQFLME MAGE-B3 [1, 20] [105, 124]  2  259 RGNDQESSQPVGPVIVQQPT PAGE5 13 1652 AREEEIWEFLNMLGIYDGKR MAGE-B4 [33, 52] [215, 234]  2  260 SSQRKLNWIPSFPTYDYFNQ PASD1 13 1653 TKMRVLRVLADSSNTSPGLY MAGE-B6 [16, 35] [368, 387]  2  261 LTLWEMMTLSIPHINLSNDD PBK 13 1654 STFEGFAQSSLQIPVSPSFS MAGE-C1 [235, 254] [258, 277]  2  262 GWEEAYTFEGARYYINHNER PEPP2 13 1655 SEEVIWEVLNAVGVYAGREH MAGE-C2 [61, 80] [245, 264]  2  263 NSLIQNLFKVTPAMGMQMRK PIWIL1 13 1656 KLREILLYFFPEHQLPSELE MORC1 [509, 528] [824, 843]  2  264 LVGRNFYDPTSAMVLQQHRL PIWIL2 13 1657 QQHVPFRESKLTHYFQSFFN MPHOSPH1 [338, 357] [426, 445]  2  265 LRYYNILFRRTFKLLDFEQV PIWIL3 13 1658 ETQFNQYKTEAASRYNLTIS MUC-1 [222, 241] [1118, 1137]  2  266 YIPDLASRRLRIALLYSHSE PIWIL4 13 1659 TTLLMKLMMAWSDNKIFRDR NLRP4 [130, 149] [162, 181]  2  267 GIRAKAVSQDMVIYSTEIHY PLAC1 13 1660 LTVYSKQIFGELADVTAKYS NR6A1 [81, 100] [333, 352]  2  268 SPEKEEQYIAQFTSQFLSLQ PRAME 13 1661 MAATLKIIERNFPELLSLNL NXF2 [277, 296] [258, 277]  2  269 DFKRANMDNDIALLLLASPI PRSS55 13 1662 GFHHIHEQIMEYIRKLSKNH NY-BR-1 [147, 166] [193, 212]  2  270 QSGAAVVHEIVRSFGTLKKE PSMA 13 1663 DDNLKPWLLEVNYSPALTLD NYD-TSPG [389, 408] [377, 396]  2  271 VVRLSSYSSPTLQSVLGSGT RAGE-1 13 1664 ELERKLEATSAQNIEFLQVI ODF2 [357, 376] [668, 687]  2  272 QLEPDYFKDMTPTIRKTQKI RCAS1 13 1665 NRSLGQRQNSPLPFQWRITH ODF4 [89, 108] [55, 74]  2  273 RQFVEFTIKEAARFKKVVLI SAGE1 13 1666 PSSPVAYDIISQELELMKKL PASD1 [860, 879] [361, 380]  2  274 KELEELRAAFTRALEYLKQE SART3 13 1667 NDLIEERYKASQDPFPAAII PBK [440, 459] [124, 143]  2  275 QHKIAEMVALMEKHKHQYDK SCP-1 13 1668 IPTSPSHGSIAAYQGYSPQR PEPP2 [704, 723] [541, 560]  2  276 METQQQEIASVRKSLQSMLF SCP3a 13 1669 KVLRSETVLDFMFNFYHQTE PIWIL1 [217, 236] [272, 291]  2  277 DSEFFLTTASGVSVLPQNRS SCRN1 13 1670 SQVVNVRTIGQPTRLRSVAQ PIWIL2 [268, 287] [696, 715]  2  278 EISILQEQISHLQFVIHSQH se57-1 13 1671 LLANHFRVISRPQWVAYKYN PIWIL3 [235, 254] [127, 146]  2  279 KKHRYLRLLPEALIRFGGFR SLCO6A1 13 1672 QYDITVSDLNQPMLVSLLKK PIWIL4 [46, 65] [343, 362]  2  280 SEPHIKRPMNAFMVWAKDER SOX-6 13 1673 RRLWGSIQSRYISMSVWTSP PRAME [617, 636] [4, 23]  2  281 KEEVAAVKIQAAFRGHIARE SP17 13 1674 VTQLEGRPFNAEKRRTSVKQ PRSS55 [113, 132] [298, 317]  2  282 YYTRSISALPTVVAYNNRAQ SPAG1 13 1675 RLQDFDKSNPIVLRMMNDQL PSMA [231, 250] [649, 668]  2  283 REEAQKMSSLLPTMWLGAQN SPAG9 13 1676 KLKLSGVVRLSSYSSPTLQS RAGE-1 [959, 978] [351, 370]  2  284 NPLQMEEEEFMEIMVEIPAK SPAN-Xc 13 1677 NNQPQPSYDLSTVLPGLTYL SAGE1 [78, 97] [542, 561]  2  285 KGVGLPFLPITSSDIDVVES SPATA19 13 1678 FRYSTSLEKHKLFISGLPFS SART3 [14, 33] [792, 811]  2  286 KSAQKFSLILKILSMIYKLV SPO11 13 1679 MEKQKPFALFVPPRSSSSQV SCP-1 [106, 125] [1, 20]  2  287 EKISYVYMKRNYKAMTKLGF SSX-1 13 1680 LQQSRIVQSQRLKTIKQLYE SCP3a [44, 63] [161, 180]  2  288 EWEKMKASEKIFYVYMKRKY SSX-2 13 1681 TGEGEFNFSEVFSPVEDHLD SCRN1 [36, 55] [215, 234]  2  289 EKIVYVYMKRKYEAMTKLGF SSX-3 13 1682 KQEDSKQLLQVNKLEKEQKL se57-1 [44, 63] [148, 167]  2  290 VERPQMTFGSLQRIFPKIMP SSX-4 13 1683 LLPEALIRFGGFRKRKKAKS SLCO6A1 [94, 113] [53, 72]  2  291 EKIIYVYMKRKYEAMTKLGF SSX-5 13 1684 AAASGLSPLQLQKGHVSHPQ SOX-6 [44, 63] [315, 334]  2  292 QPFLKDHRISTFKNWPFLEG Survivin 13 1685 LKNNLIEKDPSLVYQHLLYL SPAG1 [11, 30] [857, 876]  2  293 EPRVEVLINRINEVQQAKKK SYCE1 13 1686 GQGENKMKNLPVPVYLRPLD SPAG9 [50, 69] [660, 679]  2  294 NLTLKNHFQSVLEQLELQEK TAF7L 13 1687 MLKVSRRSLHILSTSKGLIA SPO11 [424, 443] [160, 179]  2  295 AEDTRLFAPSIKARFPAETY TAG-1 13 1688 GQDTSSQKIEDLMEMVQKLQ SYCE1 [231, 250] [25, 44]  2  296 NLEPLVSRDPPASASLFQDT TAG-2a 13 1689 VWKHGITPPLKNVRKKRFRK TAF7L [64, 83] [217, 236]  2  297 WAERIMFSDLRSLQLKKTME TDRD1 13 1690 NPVGTVVSREAILRFGFLQE TAG-1 [246, 265] [115, 134]  2  298 TLQEIFQAENTIMLLERSIM TEKT5 13 1691 KVLLDAGFAVGEQSMVTDKP TDRD1 [363, 382] [665, 684]  2  299 NDKDSLSQFWEFSETTASTV TEX101 13 1692 QEQMRKLAQRIDIQMRDNRD TEKT5 [115, 134] [225, 244]  2  300 KSDIYSFSMIMQEILTDDIP TEX14 13 1693 QAKATQFNSALFTLSSHRQG TEX14 [436, 455] [875, 894]  2  301 TLVELQMMMETIQFIENKKR TEX15 13 1694 PQAKEMFIDTVISSYNIETA TEX15 [1689, 1708] [389, 408]  2  302 VTKKVVASPRIISLAKPKVR THEG 13 1695 NEGYDRRPLASMSLPPPKAS THEG [326, 345] [349, 368]  2  303 RRTPTTSSDRTINLLEVLPW TMEM31 13 1696 RQQYFSDLFNILDTAIIVIL TPTE [57, 76] [150, 169]  2  304 SKIKKIVHSIVSSFAFGLFG TPTE 13 1697 KSPKSTTAHAILRRVETERD TSGA10 [79, 98] [87, 106]  2  305 MWMGLIQLVEGVKRKDQGFL TRAG-3 13 1698 LSKADGMWPQFRTIQEKEVI TSP50 [1, 20] [247, 266]  2  306 RQNYSSNAYHMSSTMKPNTK TSGA10 13 1699 ASAKEGTAFRMEAVQEGAAG TSPY1 [650, 669] [32, 51]  2  307 SSRPRLLWQTPTTQTLPSTT TSP50 13 1700 FVDSIFEQWLRRHRPLQEVY TYR [67, 86] [392, 411]  2  308 DEDEDMLSYMVSLEVGEEKH TSPY1 13 1701 PPPHSFIKQEPSWGGAEPHE WT1 [175, 194] [66, 85]  2  309 HNALHIYMNGTMSQVQGSAN TYR 13 1702 SQSSNLSQHQRIHMRENLLM ZNF165 [363, 382] [466, 485]  2  310 VAKKGKAVRRGRRGKKGAAT VCX 14 1703 THLESLHLEDNALKVLHNGT 5T4 [38, 57] [258, 277]  2  311 PSQASSGQARMFPNAPYLPS WT1 14 1704 SPISPHFTVTERQTFQPWPE ACRBP [117, 136] [151, 170]  2  312 KKKNQQLKVGILHLGSRQKK XAGE-1  14 1705 GFTKRLFRELMGDHVSSTKA ACTL8 [5, 24]; [306, 325] XAGE-1b [5, 24]; XAGE-1c [84, 103]; XAGE-1d [5, 24]  2  313 PRRSLQPPELIGAMLEPTDE XAGE-2 14 1706 DFAKYIEMHVIVEKQLYNHM ADAM2 [13, 32] [175, 194]  2  314 GRAFNLNSHLIRHQRIHTRE ZNF165 14 1707 EDLYVIVNIVDSILDVIGVK ADAM29 [406, 425] [223, 242]  3  315 DGRLRLARLALVLLGWVSSS 5T4 14 1708 KAPQLTSSELMAITRKMAAT AFP [13, 32] [438, 457]  3  316 RNQNPGSLLQLPHTEALLVL ACRBP 14 1709 ERQLNEAVGNVTPLQLLDWL AKAP-3 [309, 328] [830, 849]  3  317 DRKKMLEILFELLHVPSVLL ACTL8 14 1710 QWKQNATDIMEAMLKRLVSA AKAP-4 [110, 129] [414, 433]  3  318 RRYIENIYHSKPMRWPFFLF ADAM2 14 1711 KIRSEFKRKYGKSLYYYIQQ ANXA2 [673, 692] [302, 321]  3  319 EIKPLAFSTTFEHLVYKMDS ADAM29 14 1712 KNGRLTNQLQYLQKVVLKDL BRDT [135, 154] [24, 43]  3  320 QKLGEYYLQNAFLVAYTKKA AFP 14 1713 LSGEAAEAVHSGTSVKSSSG CABYR [420, 439] [451, 470]  3  321 SVVSDMMVSIMKTLKIQVKD AKAP-3 14 1714 SDTMNVSNLSQGVMLSHSPI CAGE1 [291, 310] [33, 52]  3  322 LDSQKMDMSNIVLMLIQKLL AKAP-4 14 1715 GFDIKKVHVILHFKNKYHEN CALR3 [619, 638] [138, 157]  3  323 RDKVLIRIMVSRSEVDMLKI ANXA2 14 1716 SDLQFLNFNVENSQELIQMY CCDC62 [284, 303] [294, 313]  3  324 QARLMKEESPVVSWRLEPED BAGE-1 14 1717 TYMEFLWQYKSSADKMQQLN CDCA1 [16, 35]; [137, 156] BAGE-2 [16, 35]; BAGE-3 [16, 35]; BAGE-5] [16, 35]  3  325 FVQNTLTKLLKDRRKMQTVQ BAGE-2 14 1718 TILSPKQIKTPFQKILRDKD CT46 [82, 101]; [239, 258] BAGE-3 [82, 101]  3  326 LKDLWKHSFSWPFQRPVDAV BRDT 14 1719 QQKLKVMTELYQENEMKLYR CTAGE2 [40, 59] [349, 368]  3  327 QADIEVMSTVHISSVYNDVP CABYR 14 1720 SEQDELMADISKRIQSLEDE cTAGE5 [282, 301] [160, 179]  3  328 SRLEKLLTQVRNLQFMSENE CAGE1 14 1721 MSLLSIQQQEGVQVVVQQPG CTCFL [507, 526] [97, 116]  3  329 HLYTLILRPDLSYDVKIDGQ CALR3 14 1722 GPLKNTSDVINAAKKIAEAG CTNNA2 [170, 189] [733, 752]  3  330 NSPTSLLIYKDAPAFNEKAS CCDC62 14 1723 HAIELNPSRTLLATGGDNPN DCAF12 [600, 619] [144, 163]  3  331 RETYMEFLWQYKSSADKMQQ CDCA1 14 1724 TLSSHLQIDKMTDNKTGEVL DKKL1 [135, 154] [99, 118]  3  332 GENLYMSSDPTSWSSAIQSW CRISP2 14 1725 VKNSLRGLPGPYVPGQTGNQ DMRT1 [95, 114] [253, 272]  3  333 GQKYEKIFEMLEGVQGPTAV CT45 14 1726 DVDIADVAYYFEKDVKGESL EpCAM [138, 157] [206, 225]  3  334 YQFKFKYTNNGPLMDFISKN CT46 14 1727 ERSVGPLTRKGFYLAFQDIG EPHA2 [115, 134] [167, 186]  3  335 LGEEEGEQAAGLAAVPRGGS CT47 14 1728 KEKLSPDIMKDAYVQKLVKV FAM46D [61, 80] [118, 137]  3  336 QNFYLPQNYIDQFLLTSFPT CTAGE1 14 1729 FNVLEMEVMRRQLYAVNRRL FATE1 [27, 46] [129, 148]  3  337 LYVRREKKFAVALSGLIEEK CTAGE2 14 1730 KFMNPYNAVLTKKFQVTMRG FBXO39 [40, 59] [95, 114]  3  338 TERLLKMKDWAAMLGEDITD cTAGE5 14 1731 DIEDVTPVFPQLSRSIISKL FSIP1 [268, 287] [433, 452]  3  339 SEAVELQDMSLLSIQQQEGV CTCFL 14 1732 LREEVSTWNSRILKRTAITI GASZ [89, 108] [439, 458]  3  340 SVKRGTMVRAARALLSAVTR CTNNA2 14 1733 GSHHTASPWNLSPFSKTSIH GATA-3 [117, 136] [104, 123]  3  341 SNSIYFSIAIVSEDFVPYKG CXorf48 14 1734 KVKNQLRFLAELAYDLDVDD Glypican-3 [129, 148] [515, 534]  3  342 IVFWKYRRFQRNTGEMSSNS CXorf61 14 1735 PDASSIMSTESITGSLGPLL gp100 [16, 35] [439, 458]  3  343 DTKEDVFVHQTAIKRNNPRK DBPC 14 1736 HDVTHVYNFDFPRNIEEYVH HAGE [114, 133] [554, 573]  3  344 VKRSLVYYLKNREVRLQNET DCAF12 14 1737 NLLLNYGLYRKMEIYRPHKA HDAC1 [42, 61] [40, 59]  3  345 GLTGLQSLLQGFSRLFLKGN DKKL1 14 1738 LNYGLYRKMEIYRPHKATAE HDAC2 [44, 63] [44, 63]  3  346 MENRHAMSSQYRMHSYYPPP DMRT1 14 1739 FEYFAPDFTLHPDVSTRIEN HDAC3 [278, 297] [329, 348]  3  347 VDDEESVILTLVPVKDDANM DPPA2 14 1740 PATNVSIFINNTQLSDTGTY IGFS11 [18, 37] [99, 118]  3  348 VVAGIVVLVISRKKRMAKYE EpCAM 14 1741 QDLLDVSFEFDVELPQLAEM JARID1B [279, 298] [891, 910]  3  349 GIMGQFSHHNIIRLEGVISK EPHA2 14 1742 RVPSFAAGRVIGKGGKTVNE KOC1 [665, 684] [493, 512]  3  350 NRVAYMNPIAMARWRGPTQS FAM133A 14 1743 SSKRDGAIANAATVLTNMAM KU-CT-1 [6, 25] [408, 427]  3  351 NGSVASYILASHNGISYKDL FAM46D 14 1744 RRVHPVSTMVKGLYGIKEEL LDHC [64, 83] [268, 287]  3  352 SAKRVWNMTATRPKKMGSQL FATE1 14 1745 SVKDSFRDLFIPRIETILMM LIPI [63, 82] [49, 68]  3  353 SPQFKKTMSTFHNLVSLNLN FBXO39 14 1746 DLVGFLLLKYRAREPVTKAE MAGE-A1 [213, 232] [108, 127]  3  354 RESLKMRVSKPFGMLMLSIW FMR1NB 14 1747 LYDGMEHLIYGEPRKLLTQD MAGE-A10 [58, 77] [255, 274]  3  355 RPGSRSSNASLEVLSTEPGS FSIP1 14 1748 QAQEEDLGLVGAQALQAEEQ MAGE-A11 [21, 40] [127, 146]  3  356 DDVALENFFRYFLRLSDDKM FTHL17 14 1749 ELVHFLLLKYRAREPFTKAE MAGE-A12 [45, 64] [115, 134]  3  357 RGRSTYYWPRPRRYVQPPEM GAGE-7 14 1750 QSPQGASSLPTTMNYPLWSQ MAGE-A3 [4, 23] [63, 82]  3  358 DSGISVDSNFQYGWTPLMYA GASZ 14 1751 AKELVTKAEMLERVIKNYKR MAGE-A4 [67, 86] [127, 146]  3  359 PGLSHSYMDAAQYPLPEEVD GATA-3 14 1752 DPPQSPQGASSLPTTMNYPL MAGE-A6 [29, 48] [60, 79]  3  360 EQLLQSASMELKFLIIQNAA Glypican-3 14 1753 QENYLEYRQAPGSDPVRYEF MAGE-A8 [90, 109] [255, 274]  3  361 TLIGANASFSIALNFPGSQK gp100 14 1754 VIFGKASEFMQVIFGTDVKE MAGE-A9 [76, 95] [148, 167]  3  362 DRQTVMTSATWPHSVHRLAQ HAGE 14 1755 VVDEKYKDHFTEILNGASRR MAGE-B1 [420, 439] [137, 156]  3  363 EEAFYTTDRVMTVSFHKYGE HDAC1 14 1756 KSGSLVQFLLYKYKIKKSVT MAGE-B2 [184, 203]; [114, 133] HDAC2 [185, 204]  3  364 SEYFEYFAPDFTLHPDVSTR HDAC3 14 1757 NSNPARYEFLWGPRAHAETS MAGE-B3 [326, 345] [265, 284]  3  365 ATQRDLIATQRDLIVTQRDL HOM-TES-85 14 1758 AETSKMKVLEFLAKVNDTTP MAGE-B4 [261, 280] [278, 297]  3  366 NQPEQVILYQGGQMFDGAPR IGFS11 14 1759 EGILSGDNALPKSGLLMSLL MAGE-B6 [68, 87] [273, 292]  3  367 EGEDLSKKTLLRFWLPFGFI IL13RA2 14 1760 SDEQGMSQNRLLILILSIIF MAGE-C1 [332, 351] [989, 1008]  3  368 TLDDLYPMMNALKLRAESYN JARID1B 14 1761 ASSTLYLVFSPSSFSTSSSL MAGE-C2 [737, 756] [42, 61]  3  369 QHIKQLSRFAGASIKIAPAE KOC1 14 1762 KQEFLNVQEYNHLLKVMGQY MORC1 [426, 445] [414, 433]  3  370 DPDFSMYVYEVTKSILPITN KU-CT-1 14 1763 EQEKEEIASKSALLRQIKEV MPHOSPH1 [720, 739] [207, 226]  3  371 HITMPFSSPMEAELVRRILS Lage-1 14 1764 GSGSSTTQGQDVTLAPATEP MUC-1 [91, 110] [67, 86]  3  372 TSGKDYSVSANSRIVIVTAG LDHC 14 1765 LLQEANFHIIDNVDLVVSAY NLRP4 [78, 97] [572, 591]  3  373 PSKGRRWAARAPSTRITYGT LEMD1 14 1766 SPGSTLSSSRSVELNGFMAF NR6A1 [111, 130] [191, 210]  3  374 PDKTMMDGSFSFKLLNQLGM LIPI 14 1767 NNKLYQLDGLSDITEKAPKV NXF2 [367, 386] [279, 298]  3  375 RALAETSYVKVLEYVIKVSA MAGE-A1 14 1768 IPESIYQKVMEINREVEEPP NY-BR-1 [269, 288] [442, 461]  3  376 DEKVTDLVQFLLFKYQMKEP MAGE-A10 14 1769 GRGILIFSDFKDFIFDDMYI NYD-TSPG [135, 154] [219, 238]  3  377 DKIIDLVHLLLRKYRVKGLI MAGE-A11 14 1770 KSQVMKTRLEADEVAAQLER ODF2 [224, 243] [547, 566]  3  378 PDLETSFQVALSRKMAELVH MAGE-A12  14 1771 QPDQMRSAEQTRLMPAEQRD PASD1 [99, 118] [749, 768]  3  379 PQGASSFSTTINYTLWRQSD MAGE-A2 14 1772 KRSPRGLSHSPWAVKKINPI PBK [65, 84] [50, 69]  3  380 LSRKVAELVHFLLLKYRARE MAGE-A3 14 1773 GSILLPSFQIALLTSEDHIN PEPP2 [109, 128] [212, 231]  3  381 TTEEQEAAVSSSSPLVPGTL MAGE-A4 14 1774 GSSGIIVRLSTNHFRLTSRP PIWIL1 [32, 51] [106, 125]  3  382 TTEEQEAVSSSSPLVPGTLG MAGE-A5 14 1775 KEITFLEYYSKNYGITVKEE PIWIL2 [32, 51] [448, 467]  3  383 QAALSRKVAKLVHFLLLKYR MAGE-A6 14 1776 GTSLEIWLGYVTSVLQYENS PIWIL3 [106, 125] [258, 277]  3  384 EALDEKVAELVRFLLRKYQI MAGE-A8 14 1777 VDSEATRNEWYDFYLISQVA PIWIL4 [110, 129] [756, 775]  3  385 VIKNYKRYFPVIFGKASEFM MAGE-A9 14 1778 DSLFFLRGRLDQLLRHVMNP PRAME [138, 157] [304, 323]  3  386 NSDPPRYQFLWGPRAYAETT MAGE-B1 14 1779 ENIKKFLYNFTQIPHLAGTE PSMA [262, 281] [68, 87]  3  387 FPEILKKASEGLSVVFGLEL MAGE-B2 14 1780 IRGRRYPLSEKKIMHYMYQL RAGE-1 [149, 168] [93, 112]  3  388 YDGKKHFIFGEPRKLITQDL MAGE-B3 14 1781 GSMKVKRQFVEFTIKEAARF SAGE1 [233, 252] [854, 873]  3  389 NSDPPRYQFLWGPRAHAETS MAGE-B4 14 1782 PYEEALLQAEAPRLAEYQAY SART3 [262, 281] [297, 316]  3  390 GLYPHLYEDALIDEVERALR MAGE-B6 14 1783 EETRQVYMDLNNNIEKMITA SCP-1 [385, 404] [205, 224]  3  391 EVDPDDSYVFVNTLDLTSEG MAGE-C1 14 1784 IEKRRKKASSAGVVEDMGGE SCP3a [967, 986] [50, 69]  3  392 GREHFVYGEPRELLTKVWVQ MAGE-C2 14 1785 SQLSLTTKMDAEHPELRSYA SCRN1 [261, 280] [189, 208]  3  393 EDFPARWSFRAYTSVLYFNP MORC1 14 1786 QDKRIENLREKVNILEAQNK se57-1 [229, 248] [274, 293]  3  394 ADIKKQAEIAHLYIASLPDP MPHOSPH1 14 1787 TTIAFFIYKRRLNENTDFPD SLCO6A1 [687, 706] [684, 703]  3  395 STEKNAVSMTSSVLSSHSPG MUC-1 14 1788 QQQEQIARQQQQLLQQQHKI SOX-6 [48, 67] [232, 251]  3  396 IWFQNRRYKTKRKQLSSELG NKX3.1 14 1789 LADGNVKAFYRRALAHKGLK SPAG1 [170, 189] [686, 705]  3  397 QPERLLFVIDSFEELQGGLN NLRP4 14 1790 EKKRSSIWQFFSRLFSSSSN SPAG9 [222, 241] [546, 565]  3  398 MKAINFLNQDIRGLTSASQL NR6A1 14 1791 SLILKILSMIYKLVQSNTYA SPO11 [392, 411] [112, 131]  3  399 ASPQETQSAFSIPVSTLSSS NXF2 14 1792 PDVENEVKALLRSDAEAVST TAF7L [544, 563] [259, 278]  3  400 HHIHEQIMEYIRKLSKNHQN NY-BR-1 14 1793 NESVRPYTPFEVKIRSYNRR TAG-1 [195, 214] [775, 794]  3  401 SRHTPHKTLMPYASLFQSHS NYD-TSPG 14 1794 LMELNGSSSQLIIMLLKNFM TDRD1 [513, 532] [1060, 1079]  3  402 EAELARRSLAQDAPPLPVPG NY-ESO-1 14 1795 DIPQLKLVNEVFTIDDTLQT TEKT5 [101, 120] [409, 428]  3  403 STNRSMQNYVQFLKSSYANV ODF2 14 1796 AEQEHSSKLRHPYLLQLMAV TEX14 [788, 807] [294, 313]  3  404 SAPSHSISARTKAFRVDSTP ODF3 14 1797 LRSLLWYDETLYAELLGKPR TEX15 [118, 137] [1716, 1735]  3  405 RWPVDVSNRIHTSAHVMSMG ODF4 14 1798 HVSDHNRLLHLARPKAQSDK THEG [115, 134] [293, 312]  3  406 SRVTNNVVLEAPFLVGIEGS OIP5 14 1799 TTDKILIDVFDGLPLYDDVK TPTE [107, 126] [458, 477]  3  407 QAVPAFQGPDMEAFQQELAL PAGE2 14 1800 TVEKEMKSLARKAMDTESEL TSGA10 [58, 77] [174, 193]  3  408 EPAAAAAAAAISDDQIDIAE PASD1 14 1801 QMTQTASDVPVLQVIMHSRY TSP50 [227, 246] [173, 192]  3  409 EDPKDRPSAAHIVEALETDV PBK 14 1802 TPIEWYPDYEVEAYRRRHHN TSPY1 [303, 322] [233, 252]  3  410 PTPESSTIASYVTLRKTKKM PEPP2 14 1803 SQVQGSANDPIFLLHHAFVD TYR [856, 875] [375, 394]  3  411 QWALYQYHIDYNPLMEARRL PIWIL1 14 1804 LESQPAIRNQGYSTVTFDGT WT1 [126, 145] [138, 157]  3  412 FYNVVFARVMKLLDMKLVGR PIWIL2 14 1805 LKPEIHTKEQILELLVLEQF ZNF165 [322, 341] [78, 97]  3  413 HYAHKLAYLVGQSIHQEPNR PIWIL3 15 1806 ASNHFLYLPRDVLAQLPSLR 5T4 [854, 873] [218, 237]  3  414 FERKLLFSADVSYKVLRNET PIWIL4 15 1807 ALSPGKSEDVVLRWSQEFST ACRBP [253, 272] [517, 536]  3  415 QEAQPLQPSHFLDISEDWSL PLAC1 15 1808 QNLGEALDFRERQQSALDES ACTL8 [184, 203] [216, 235]  3  416 NLRALLLSHIHASSYISPEK PRAME 15 1809 NFDSLPVQITVPEKIRSIIK ADAM2 [261, 280] [19, 38]  3  417 KNSVKTDLMKAPMVIMDWEE PRSS55 15 1810 FRIVEIVVVIDNYLYIRYER ADAM29 [202, 221] [197, 216]  3  418 TPLMYSLVHNLTKELKSPDE PSMA 15 1811 KWVESIFLIFLLNFTESRTL AFP [467, 486] [2, 21]  3  419 EIQALRRLNPHPNILMLHEV RAGE-1 15 1812 LGNGSSVDEVSFYANALTNL AKAP-3 [50, 69] [115, 134]  3  420 MTPTIRKTQKIVIKKREPLN RCAS1 15 1813 YSVYADQVNIDYLMNRPQNL AKAP-4 [98, 117] [156, 175]  3  421 NGQAASDNVFSTVPPAFINM SAGE1 15 1814 LEKDIISDTSGDFRKLMVAL ANXA2 [589, 608] [155, 174]  3  422 KNPDFKVFRYSTSLEKHKLF SART3 15 1815 GDKLGRVVHIIQSREPSLSN BRDT [785, 804] [527, 546]  3  423 ASLEIELSNLKAELLSVKKQ SCP-1 15 1816 KVSSIHSDQSDVLMVDVATS CABYR [747, 766] [182, 201]  3  424 AKRKRLEMYTKASLKTSNQK SCP3a 15 1817 GAKLDKYHSLNEELDFLVTS CAGE1 [87, 106] [688, 707]  3  425 RSIFKPFIFVDDVKLVPKTQ SCRN1 15 1818 KVHVILHFKNKYHENKKLIR CALR3 [302, 321] [143, 162]  3  426 MEDNSALYESTSAHIIEETE se57-1 15 1819 ARNETLSNTLVELSAQVGQL CCDC62 [16, 35] [133, 152]  3  427 RVVPDKLRSLALGVSYVILR SLCO6A1 15 1820 SQEIFLNLKTALEKYHDGIE CDCA1 [605, 624] [419, 438]  3  428 GSSLDILSSLNSPALFGDQD SOX-6 15 1821 NVGEVSTPFHIFKVKVTTER CT46 [475, 494] [211, 230]  3  429 SSEEDKEKEEVAAVKIQAAF SP17 15 1822 ATEELETYRKRAKDLKEFEK CTAGE2 [106, 125] [394, 413]  3  430 NRALELHPFSMKPLLRRAMA SPAG1 15 1823 ELYQENEMKLHRKLTVEENY cTAGE5 [511, 530] [387, 406]  3  431 EDGRVQAFGWSLPQKYKQVT SPAG9 15 1824 AFQDSVLEEEVELVLAPSEE CTCFL [639, 658] [55, 74]  3  432 ESSTILVVRYRRNVKRTSPE SPAN-Xc 15 1825 TVMPRFAEQVEVAIEALSAN CTNNA2 [46, 65] [580, 599]  3  433 EQVRRSISRLTDVSAQDFSM SPATA19 15 1826 HLGTLNKVFASQWLNHRQVV DCAF12 [141, 160] [85, 104]  3  434 QGIRNLVTDAKFVLIVEKDA SPO11 15 1827 KEALVPIQKATDSFHTELHP DKKL1 [208, 227] [146, 165]  3  435 WKKMKYSEKISYVYMKRNYK SSX-1 15 1828 ASGALVGAASGSSAGGSSRG DMRT1 [37, 56] [34, 53]  3  436 EKIFYVYMKRKYEAMTKLGF SSX-2 15 1829 GDQDNWLRTNWVYRGEAERI EPHA2 [44, 63] [75, 94]  3  437 EWEKMKVSEKIVYVYMKRKY SSX-3 15 1830 ASHNGISYKDLDVIFGVELP FAM46D [36, 55] [73, 92]  3  438 EWEKMKSSEKIVYVYMKLNY SSX-4 15 1831 ERLARILLQEIPIRSISLRS FBXO39 [36, 55] [296, 315]  3  439 EWEKMKASEKIIYVYMKRKY SSX-5 15 1832 QGLEMRIKLWEEIKSAKYSE FSIP1 [36, 55] [142, 161]  3  440 TLPPAWQPFLKDHRISTFKN Survivin 15 1833 YAASVANAELVRVLLDRGAN GASZ [5, 24] [85, 104]  3  441 KNKQRQLRLAFEEQLEDLMG SYCE1 15 1834 PLPDSMKLESSHSRGSMTAL GATA-3 [148, 167] [189, 208]  3  442 QRQKDLIMKVENLTLKNHFQ TAF7L 15 1835 IQNAAVFQEAFEIVVRHAKN Glypican-3 [413, 432] [105, 124]  3  443 DFSTKSVFSKFAQLNLAAED TAG-1 15 1836 AFTITDQVPFSVSVSQLRAL gp100 [214, 233] [206, 225]  3  444 GGAESERGLPASTLSRLSNR TAG-2a 15 1837 FVNLKNITYLVLDEADKMLD HAGE [29, 48] [384, 403]  3  445 GDFYVQLYSSEVLEYMNQLS TDRD1 15 1838 RPDNMSEYSKQMQRFNVGED HDAC1 [277, 296] [80, 99]; HDAC2 [81, 100]  3  446 DQMWRQFTDTNLAFNARISE TEKT5 15 1839 PTATQDQVQGTVTIRNISAL IGFS11 [329, 348] [189, 208]  3  447 MTVEADPANMFNWTTEEVET TEX101 15 1840 PYKYKLRYRYTLDDLYPMMN JARID1B [34, 53] [727, 746]  3  448 QMAYLGSLPVIGEKEVIQAD TEX14 15 1841 DQTPDENDQVVVKITGHFYA KOC1 [226, 245] [526, 545]  3  449 LKKSKYFISTYIDFVPYIAS TEX15 15 1842 FHPGGLMKLRSREADLYRFI KU-CT-1 [2172, 2191] [853, 872]  3  450 TERFLEDTTLTITVPAVSRR THEG 15 1843 KDYSVSANSRIVIVTAGARQ LDHC [174, 193] [81, 100]  3  451 LYDDVKVQFFYSNLPTYYDN TPTE 15 1844 NDFVNISSIGLTYFQSSNLQ LIPI [472, 491] [413, 432]  3  452 DQVDWSRLLRDAGLVKMSRK TRAG-3 15 1845 GREHSAYGEPRKLLTQDLVQ MAGE-A1 [52, 71] [226, 245]  3  453 MANERISMQNLEALLVANRD TSGA10 15 1846 LLTQDWVQENYLEYRQVPGS MAGE-A10 [557, 576] [270, 289]; MAGE-A9 [244, 263]  3  454 DNFYHNFTKIPTLVQIIKSQ TSP50 15 1847 VGAQALQAEEQEAAFFSSTL MAGE-A11 [274, 293] [136, 155]  3  455 LVNITEYRASHSTPIEWYPD TSPY1 15 1848 SPQGASTLPTTINYTLWSQS MAGE-A12 [221, 240] [64, 83]  3  456 ADASQSSMHNALHIYMNGTM TYR 15 1849 REPVTKAEMLGSVVGNWQYF MAGE-A3 [355, 374] [127, 146]; MAGE-A6 [127, 146]  3  457 AVRRGRRGKKGAATKMAAVT VCX 15 1850 WVQENYLEYRQVPGSNPARY MAGE-A4 [44, 63] [251, 270]  3  458 TWNQMNLGATLKGVAAGSSS WT1 15 1851 DSIFGDPKKLLTQYFVQENY MAGE-A6 [237, 256] [236, 255]  3  459 QTPGINLDLGSGVKVKIIPK XAGE-1 15 1852 QIKEPVTKAEMLESVIKNYK MAGE-A8 [46, 65]; [128, 147] XAGE-1c [125, 144]; XAGE-1b [46, 65]  3  460 QLKVGILHLGSRQKKIRIQL XAGE-1d 15 1853 DGEEHLIYGEPRKFITQDLV MAGE-B1 [10, 29] [231, 250]  3  461 TPDQKREDDQGAAEIQVPDL XAGE-2 15 1854 VNPNGHTYTFIDKVDLTDEE MAGE-B2 [47, 66] [171, 190]  3  462 KEQILELLVLEQFLTILPGD ZNF165 15 1855 KMKKPIMKADMLKIVQKSHK MAGE-B3 [85, 104] [127, 146]  4  463 NSLVSLTYVSFRNLTHLESL 5T4 15 1856 LKIISKKYKEHFPEIFRKVS MAGE-B4 [244, 263] [136, 155]  4  464 EDVVLRWSQEFSTLTLGQFG ACRBP 15 1857 GSPDAVVSYSKSDVAANGQD MAGE-B6 [524, 543] [71, 90]  4  465 KTLEFAGQDLSAYLLKSLFK ACTL8 15 1858 LQIPVSRSFSSTLLSIFQSS MAGE-C1 [171, 190] [198, 217]  4  466 RTISLESLAVILAQLLSLSM ADAM2 15 1859 YTLDEKVAELVEFLLLKYEA MAGE-C2 [300, 319] [139, 158]  4  467 SENITPRMQHDTSHLFTTLG ADAM29 15 1860 LYRPRKYLYVTSSFKGAFKD MORC1 [274, 293] [268, 287]  4  468 NFGTRTFQAITVTKLSQKFT AFP 15 1861 RKKWLEEKMMLITQAKEAEN MPHOSPH1 [229, 248] [1459, 1478]  4  469 DLRSVFFNFIRNLLSETIFK AKAP-3 15 1862 STLVHNGTSARATTTPASKS MUC-1 [589, 608] [970, 989]  4  470 SDLQKYALGFQHALSPSTST AKAP-4 15 1863 QELLVANFEKARRAHWIFLG NLRP4 [116, 135] [481, 500]  4  471 QNKPLYFADRLYDSMKGKGT ANXA2 15 1864 QDFTEYKYTHQPNRFPDLMM NR6A1 [264, 283] [423, 442]  4  472 SEILKEMLAKKHFSYAWPFY BRDT 15 1865 KLESAWELGKVKGLKLEELW NXF2 [277, 296] [307, 326]  4  473 AYFQELTMYRGNTTMDIKDL CABYR 15 1866 LQRKMNVDVSSTIYNNEVLH NY-BR-1 [39, 58] [1175, 1194]  4  474 KITKQQVFIDVINKLKENVE CAGE1 15 1867 TIYVYQEGLVRFATEKFDLS NYD-TSPG [343, 362] [269, 288]  4  475 RVALATVYFQEEFLDGEHWR CALR3 15 1868 DSLVERLHRQTAEYSAFKLE ODF2 [15, 34] [488, 507]  4  476 HPSNFIIEAPGHMSDVEWMS CCDC62 15 1869 LETPQDYIRLWQELSDSLGP PASD1 [517, 536] [683, 702]  4  477 QEKRGAVYERVTTINQEIQK CDCA1 15 1870 EAVEENGVITDKADIFAFGL PBK [381, 400] [216, 235]  4  478 NKHNELRKAVSPPASNMLKM CRISP2 15 1871 QTESAGIQRAQIQKELWRIQ PEPP2 [42, 61] [747, 766]  4  479 AGDSLIAGSAMSKAKKLMTG CT45 15 1872 LSTNHFRLTSRPQWALYQYH PIWIL1 [42, 61] [114, 133]  4  480 VGEVSTPFHIFKVKVTTERE CT46 15 1873 KSMRFGMLKDHQAVTGNVTA PIWIL2 [212, 231] [254, 273]  4  481 ENRQLSRLMVGPHAAARNLW CT47 15 1874 LKFDTNFLSVPGRVLKNANI PIWIL3 [143, 162] [458, 477]  4  482 LTERLLKMKDGVAMLEEDVT CTAGE2 15 1875 WGLHFGSQISLTGRIVPSEK PIWIL4 [237, 256] [434, 453]  4  483 PSSETRAFLSPPTLLEGPLR cTAGE5 15 1876 PSVSQLSVLSLSGVMLTDVS PRAME [527, 546] [346, 365]  4  484 KSDLRVHMRNLHAYSAAELK CTCFL 15 1877 SVYETYELVEKFYDPMFKYH PSMA [440, 459] [554, 573]  4  485 ISDSFLETNVPLLVLIEAAK CTNNA2 15 1878 RLNPHPNILMLHEVVFDRKS RAGE-1 [388, 407] [56, 75]  4  486 RLLRLALAFYGRTADPAERQ CXorf48 15 1879 TIKEAARFKKVVLIQQLEKA SAGE1 [3, 22] [866, 885]  4  487 PHSIARQKRILVNLSMVENK CXorf61 15 1880 ELTKVRMARQKMSEIFPLTE SART3 [71, 90] [127, 146]  4  488 PARSQADKPVLAIQVLGTVK DBPC 15 1881 EELKGTEQELIGLLQAREKE SCP-1 [80, 99] [458, 477]  4  489 GSEWSVYAVGSQAHVSFLDP DCAF12 15 1882 EGVGVDINKALLAKRKRLEM SCP3a [305, 324] [75, 94]  4  490 SRLSPRKTHLLYILRPSRQL DKKL1 15 1883 QEESITVQTMMNTLRDKASG SCRN1 [223, 242] [245, 264]  4  491 SSQDSGLVSLSSSSPISNKS DMRT1 15 1884 IPPRDKMEDNSALYESTSAH se57-1 [328, 347] [10, 29]  4  492 ERAEETNTVEVITSAPGAML DPPA2 15 1885 LKTIEKLALEKSYDISSGLV SLCO6A1 [167, 186] [139, 158]  4  493 QKEITTRYQLDPKFITSILY EpCAM 15 1886 TSPTQNLFPASKTSPVNLPN SOX-6 [167, 186] [441, 460]  4  494 PGHQKRIAYSLLGLKDQVNT EPHA2 15 1887 PGNVKALLRRATTYKHQNKL SPAG1 [952, 971] [273, 292]  4  495 RGPTQSVGPTIQDYLNRPRP FAM133A 15 1888 SIKLKDSILSIVHVKGIVLV SPAG9 [20, 39] [996, 1015]  4  496 LDPMLDFYSDKNAKLTKESY FAM46D 15 1889 LASSSEVLASIENIIQDIIT SPO11 [180, 199] [41, 60]  4  497 EEQGATWRHRETLIIAVLVS FATE1 15 1890 QGHTSSEYDMLREMFSDSRS TAF7L [152, 171] [311, 330]  4  498 WRNSIRSSFISSLSFFLKKM FBXO39 15 1891 LWSKGTEILVNSSRVTVTPD TAG-1 [141, 160] [451, 470]  4  499 RRSHRAMRVAHLELATYELA FMR1NB 15 1892 IKIVDILEEEVVTFAVEVEL TDRD1 [13, 32] [410, 429]  4  500 EEEDTFSSVFHTQIPPEEYE FSIP1 15 1893 DESTSTLAPPTILPTLRSAL TEKT5 [191, 210] [66, 85]  4  501 LSMAFYFNRDDVALENFFRY FTHL17 15 1894 GEYFYSSTAQENLALETSSP TEX14 [36, 55] [1088, 1107]  4  502 WPRPRRYVQPPEMIGPMRPE GAGE-7 15 1895 LDKQRILTVDSFAASSTVPH TEX15 [11, 30] [1354, 1373]  4  503 LKERDITLRHLLTMREDEFT GASZ 15 1896 EDTTLTITVPAVSRRVEELS THEG [295, 314] [179, 198]  4  504 FPKNSSFNPAALSRHMSSLS GATA-3 15 1897 AYDPKHFHNRVVRIMIDDHN TPTE [386, 405] [289, 308]  4  505 SMELKFLIIQNAAVFQEAFE Glypican-3 15 1898 SRDVAQFRNVVTQLEADLDI TSGA10 [97, 116] [610, 629]  4  506 AHSSSAFTITDQVPFSVSVS gp100 15 1899 TTQTLPSTTMETQFPVSEGK TSP50 [201, 220] [78, 97]  4  507 EEEKWSHMQTFLQSMSSTDK HAGE 15 1900 LVERREEAQRAQQAVPGPGP TSPY1 [470, 489] [83, 102]  4  508 EKIKQRLFENLRMLPHAPGV HDAC1 15 1901 KNGSTPMFNDINIYDLFVWM TYR [360, 379]; [160, 179] HDAC2 [361, 380]  4  509 WTYETSLLVEEAISEELPYS HDAC3 15 1902 QRKFSRSDHLKTHTRTHTGK WT1 [307, 326] [389, 408]  4  510 PNHPSRKKVNFLDMSLDDII HOM-TES-85 15 1903 ENSRSMPKLEIFEKIESQRI ZNF165 [15, 34] [188, 207]  4  511 SSDNNTLTSSNAYNSRYWSN IGFS11 16 1904 HLPSLRQLDLSHNPLADLSP 5T4 [305, 324] [140, 159]  4  512 GSETWKTIITKNLHYKDGFD IL13RA2 16 1905 KEGREAVSQLQTDSEPKFHS ACRBP [77, 96] [239, 258]  4  513 PYSAVEKAMARLQELLTVSE JARID1B 16 1906 TLEFAGQDLSAYLLKSLFKE ACTL8 [950, 969] [172, 191]  4  514 EAQDIKFTEEIPLKILAHNN KOC1 16 1907 QLYNHMGSDTTVVAQKVFQL ADAM2 [267, 286] [189, 208]  4  515 LLRELDVMNSVIAQLAPEEE KU-CT-1 16 1908 VFTYTDQGAILEDQPFVQNN ADAM29 [103, 122] [80, 99]  4  516 AELVRRILSRDAAPLPRPGA Lage-1 16 1909 EYSRRHPQLAVSVILRVAKG AFP [102, 121] [357, 376]  4  517 NLDSARFRYLIGEKLGVHPT LDHC 16 1910 MDTSTDPVRVLSWLRRDLEK AKAP-3  [164, 183] [32, 51]  4  518 LQGNIILSTEKSKKLKKWPE LEMD1 16 1911 SKIASEMAYEAVELTAAEMR AKAP-4 [74, 93] [268, 287]  4  519 GSIPLWLQNFVRILLNEEDM LIPI 16 1912 ETVILGLLKTPAQYDASELK ANXA2 [108, 127] [96, 115]  4  520 FPEIFGKASESLQLVFGIDV MAGE-A1 16 1913 DKSKLWLLKDRDLARQKEQE BRDT [140, 159] [900, 919]  4  521 DGMEHLIYGEPRKLLTQDWV MAGE-A10 16 1914 PGTEQTEAVGGLSSKPATPK CABYR [257, 276] [129, 148]  4  522 EEQEAAFFSSTLNVGTLEEL MAGE-A11 16 1915 PVQEDMALNEVLQKLKHTNR CAGE1 [144, 163] [298, 317]  4  523 QDFFPVIFSKASEYLQLVFG MAGE-A12 16 1916 HKEKDKGLQTTQNGRFYAIS CALR3 [144, 163]; [59, 78] MAGE-A2 [144, 163]  4  524 PDLESEFQAALSRKVAELVH MAGE-A3 16 1917 PTLSDEKQWHDVSVYLGLTN CCDC62 [99, 118] [453, 472]  4  525 NKVDELAHFLLRKYRAKELV MAGE-A4 16 1918 DLSDNREKLASILKESLNLE CDCA1 [112, 131] [302, 321]  4  526 AIPTAIDFTLWRQSIKGSSN MAGE-A5 16 1919 ESSMLSTDTKKASILLIRKI CT46 [70, 89] [138, 157]  4  527 PDLESEFQAALSRKVAKLVH MAGE-A6 16 1920 TEIEFKIKLLEKDPYGLDVP CTAGE2 [99, 118] [458, 477]  4  528 EEQKAASSSSTLIMGTLEEV MAGE-A8 16 1921 IEEKSKLLEKFSLVQKEYEG cTAGE5 [34, 53] [86, 105]  4  529 QGGASSSISVYYTLWSQFDE MAGE-A9 16 1922 TSGELVRHRRYKHTHEKPFK CTCFL [62, 81] [324, 343]  4  530 RTTATTFRARSRAPFSRSSH MAGE-B1 16 1923 KKTRDLRRQLRKAVMDHISD CTNNA2 [326, 345] [371, 390]  4  531 PLTRKSGSLVQFLLYKYKIK MAGE-B2 16 1924 PSLLKEREFHLGTLNKVFAS DCAF12 [110, 129] [76, 95]  4  532 EERVQAAAMLNDGSSAMGRK MAGE-B3 16 1925 EHQLGNNTLSSHLQIDKMTD DKKL1 [315, 334] [92, 111]  4  533 RVAARRGTTAMTSAYSRATS MAGE-B4 16 1926 GSSRGGGSGSGASDLGAGSK DMRT1 [320, 339] [49, 68]  4  534 VRREYKPYFPQILNRTSQHL MAGE-B6 16 1927 LEGRSTTSLSVSWSIPPPQQ EPHA2 [225, 244] [444, 463]  4  535 ISRYTGYFPVIFRKAREFIE MAGE-C1 16 1928 PTMEVKPKDIIHVVKDQLIG FAM46D [939, 958] [34, 53]  4  536 VFSPSSFSTSSSLILGGPEE MAGE-C2 16 1929 RPSRVHASEVESAVWYVKKF FBXO39 [49, 68] [66, 85]  4  537 TSVLYFNPWMRIFIQAKRVK MORC1 16 1930 FIKRNIELAKESRNPVVMVD FSIP1 [241, 260] [254, 273]  4  538 KFSVWVSFFEIYNEYIYDLF MPHOSPH1 16 1931 TQVVALLVAHGAEVNTQDEN GASZ [268, 287] [162, 181]  4  539 NGGSSLSYTNPAVAAASANL MUC-1 16 1932 KDNEISTFHNLGNVHSPLKL Glypican-3 [1236, 1255] [545, 564]  4  540 ELERKFSHQKYLSAPERAHL NKX3.1 16 1933 DIVQGIESAEILQAVPSGEG gp100 [138, 157] [488, 507]  4  541 MQDPAFVKQAVNLLQEANFH NLRP4 16 1934 GSTDNNVVAGDRPLIDWDQI HAGE [560, 579] [157, 176]  4  542 SSRSVELNGFMAFREQYMGM NR6A1 16 1935 GSVAGAVKLNRQQTDMAVNW HDAC2 [198, 217] [117, 136]  4  543 IFVNHSTAPYSVKNKLKPGQ NXF2 16 1936 RGSSPQVMSRSNGSVSRKPR IGFS11 [194, 213] [378, 397]  4  544 EKNEEIFNYNNHLKNRIYQY NY-BR-1 16 1937 LPEIQELYQTLLAKPSPAQQ JARID1B [1312, 1331] [1360, 1379]  4  545 SNLQNNYAHLTNSSINKSGA NYD-TSPG 16 1938 SDLESIFKDAKIPVSGPFLV KOC1 [288, 307] [16, 35]  4  546 ILTIRLTAADHRQLQLSISS NY-ESO-1 16 1939 SPLRSANTVVQSKAALAVTA KU-CT-1 [132, 151] [446, 465]  4  547 EDSERLMEQQGALLKRLAEA ODF2 16 1940 QHGSLFFSTSKITSGKDYSV LDHC [281, 300] [66, 85]  4  548 KASQPSFSIKGRSKLGGFSD ODF3 16 1941 PRLGYQAKLFKGVLKERMEG LIPI [155, 174] [319, 338]  4  549 RITHSFRWMAQVLASELSLV ODF4 16 1942 YRQVPDSDPARYEFLWGPRA MAGE-A1 [71, 90] [251, 270]  4  550 THNRLKSLMKILSEVTPDQS OIP5 16 1943 YRQVPGSDPARYEFLWGPRA MAGE-A10 [206, 225] [283, 302]  4  551 DGPDVREGIMPTFDLTKVLE PAGE2 16 1944 YEFLWGPRAHAETSKMKVLE MAGE-A11 [86, 105] [382, 401]  4  552 EVNPLYRADPVDLEFSVDQV PASD1 16 1945 ILGDPKKLLTQHFVQENYLE MAGE-A3 [292, 311] [238, 257]  4  553 IILKVALNMARGLKYLHQEK PBK 16 1946 ASESLKMIFGIDVKEVDPAS MAGE-A4 [142, 161] [155, 174]  4  554 DHINRKYAFKAAHPNMRTYY PEPP2 16 1947 SVMGLYDGREHSVYWKLRKL MAGE-A8 [228, 247] [229, 248]  4  555 VTPAMGMQMRKAIMIEVDDR PIWIL1 16 1948 YKMREPIMKADMLKVVDEKY MAGE-B1 [518, 537] [123, 142]  4  556 ESVGLVSMFRGLGIETVSKT PIWIL2 16 1949 DGEEHSVFGEPWKLITKDLV MAGE-B2 [67, 86] [234, 253]  4  557 FGERHIFDGNSLLLSRPLKE PIWIL3 16 1950 KVDSTKDSYVLVSKMDLPNN MAGE-B3 [170, 189] [170, 189]  4  558 ADVSYKVLRNETVLEFMTAL PIWIL4 16 1951 NPTTHSYILVSMLGPNDGNQ MAGE-B4 [261, 280] [170, 189]  4  559 HFLDISEDWSLHTDDMIGSM PLAC1 16 1952 LDEKVDELARFLLLKYQVKQ MAGE-C1 [193, 212] [908, 927]  4  560 YLGQMINLRALLLSHIHASS PRAME 16 1953 QATIDTADDATVMASESLSV MAGE-C2 [255, 274] [345, 364]  4  561 DNDIALLLLASPIKLDDLKV PRSS55 16 1954 FNQIQNTYMVQYEKKIKRKL MORC1 [154, 173] [866, 885]  4  562 EMKTYSVSFDSLFSAVKNFT PSMA 16 1955 RTLDSVSQISNIDLLNLRDL MPHOSPH1 [621, 640] [993, 1012]  4  563 ELMDMNIYELIRGRRYPLSE RAGE-1 16 1956 HNGTSARATTTPASKSTPFS MUC-1 [83, 102] [974, 993]  4  564 EEEEDAAWQAEEVLRQQKLA RCAS1 16 1957 MAASFFSDFGLMWYLEELKK NLRP4 [160, 179] [1, 20]  4  565 DQPQPNNVLSTVQPVIIYLT SAGE1 16 1958 LQMGMNRKAIREDGMPGGRN NR6A1 [308, 327] [121, 140]  4  566 TDYVEIWQAYLDYLRRRVDF SART3 16 1959 DGYTRNWFKVTIPYGIKYDK NXF2 [415, 434] [118, 137]  4  567 DKKTQTFLLETPEIYWKLDS SCP-1 16 1960 IDIHFLERKMQHHLLKEKNE NY-BR-1 [793, 812] [1296, 1315]  4  568 QNEFKKEMAMLQKKIMMETQ SCP3a 16 1961 RTTTPAFTLNIPSEANHTEQ NYD-TSPG [201, 220] [19, 38]  4  569 HSFQSAYLIVDRDEAWVLET SCRN1 16 1962 ITPPSSEKLVSVMRLSDLST ODF2 [151, 170] [91, 110]  4  570 LQFVIHSQHQNLRSVIQEME se57-1 16 1963 SSTVFLDTMPESPALSLQDF PASD1 [246, 265] [268, 287]  4  571 IIFTTIAFFIYKRRLNENTD SLCO6A1 16 1964 KERPISMINEASNYNVTSDY PEPP2 [681, 700] [115, 134]  4  572 IGEYKQLMRSRRQEMRQFFT SOX-6 16 1965 PLDNWLLIYTRRNYEAANSL PIWIL1 [707, 726] [492, 511]  4  573 GSKVEDRFYNNHAFEEQEPP SP17 16 1966 DRIETYVRTIQSTLGAEGKI PIWIL2 [61, 80] [647, 666]  4  574 SMKPLLRRAMAYETLEQYGK SPAG1 16 1967 DGDANSYIDTLRKYTRPTLQ PIWIL3 [520, 539] [549, 568]  4  575 RLDSTLRLYHAHTYQHLQDV SPAG9 16 1968 GQLKTLIEYEVPQLLSSVAE PIWIL4 [1107, 1126] [698, 717]  4  576 TILVVRYRRNVKRTSPEELL SPAN-Xc 16 1969 TSPRRLVELAGQSLLKDEAL PRAME [49, 68] [21, 40]  4  577 RWSHTRIFQVPSEMTEDIMR SPATA19 16 1970 PHLAGTEQNFQLAKQIQSQW PSMA [118, 137] [81, 100]  4  578 ASIENIIQDIITSLARNEAP SPO11 16 1971 NFDFPFKKGSGIPLLTTNLS RAGE-1 [49, 68] [236, 255]  4  579 TFGRLHRIIPKIMPKKPAED SSX-1 16 1972 AMSSRDLYATITHSVREEKM SAGE1 [100, 119] [474, 493]  4  580 AWTHRLRERKQLVIYEEISD SSX-2 16 1973 AATEAPKMSNADFAKLFLRK SART3 [163, 182] [944, 963]  4  581 AMTKLGFKAILPSFMRNKRV SSX-3 16 1974 EVEKAKVIADEAVKLQKEID SCP-1 [57, 76] [681, 700]  4  582 TFGSLQRIFPKIMPKKPAEE SSX-4 16 1975 SGKPSVEDQFTRAYDFETED SCP3a [100, 119] [12, 31]  4  583 EAMTKLGFKATLPPFMRNKR SSX-5 16 1976 EHPELRSYAQSQGWWTGEGE SCRN1 [56, 75] [200, 219]  4  584 TNNKKKEFEETAKKVRRAIE Survivin 16 1977 LKIKLQASREAGAAALRNVA se57-1 [117, 136] [112, 131]  4  585 RKAEELLAAAAQRHQQLQQK SYCE1 16 1978 SGSQDEVSRGVEPLEAARAQ SLCO6A1 [248, 267] [9, 28]  4  586 LRTLDKKTFYKTADISQMLV TAF7L 16 1979 PERRKGSLADVVDTLKQKKL SOX-6 [163, 182] [120, 139]  4  587 WMDYEFRVIASNILGTGEPS TAG-1 16 1980 DTFLLLIQSLKNNLIEKDPS SPAG1 [678, 697] [848, 867]  4  588 YRASVLAYASEESVLVGYVD TDRD1 16 1981 NQYKERLMELQEAVRWTEMI SPAG9 [559, 578] [516, 535]  4  589 GFWKSELSYELDRLLTENQN TEKT5 16 1982 VTDAKFVLIVEKDATFQRLL SPO11 [149, 168] [214, 233]  4  590 QADDEPTFSFFSGPYMVMTN TEX14 16 1983 DRGSETTYESSADIAGDEGT TAF7L [243, 262] [36, 55]  4  591 YIEIVMVSETIHFLKNSIAK TEX15 16 1984 GGAPGELIVNWTPMSREYQN TAG-1 [2062, 2081] [721, 740]  4  592 MPMSEVSQVSRAAQMAVPSS THEG 16 1985 GDGSWYRALVKEILPNGHVK TDRD1 [247, 266] [775, 794]  4  593 FIKHFIIYSIPRYVADLKIQ TPTE 16 1986 EEAEHLFETLSDQMWRQFTD TEKT5 [415, 434] [318, 337]  4  594 DAGLVKMSRKPRASSPLSNN TRAG-3 16 1987 QAIIQGFSYDLLKKIDSPQR TEX14 [62, 81] [152, 171]  4  595 LNAERSYKSQISTLHKSVVK TSGA10 16 1988 LKKAHRRVHTSLQLITKVGE TEX15 [470, 489] [1004, 1023]  4  596 IWRDVIYSVRVGSPWIDQMT TSP50 16 1989 TPVWPIPRSSLEYRASSRLK THEG [156, 175] [214, 233]  4  597 GEEAVLLLDDIMAEVEVVAE TSPY1 16 1990 RRILFIKHFIIYSIPRYVRD TPTE [60, 79] [411, 430]  4  598 HYYVSMDALLGGSEIWRDID TYR 16 1991 LLYEQAQEEITRLRREMMKS TSGA10 [180, 199] [66, 85]  4  599 GAQYRIHTHGVFRGIQDVRR WT1 16 1992 IMHSRYRAQRFWSWVGQAND TSP50 [283, 302] [187, 206]  4  600 TAITREEGGPRSGGAQAKLG XAGE-1c 16 1993 AVQVELEPVNAQARKAFSRQ TSPY1 [13, 32] [114, 133]  4  601 EGGTDVKGKILPKAEHFKMP XAGE-2 16 1994 HPTNPNLLSPASFFSSWQIV TYR [83, 102] [256, 275]  4  602 DLERGTDEAVLQVQAHEHGQ ZNF165 16 1995 GHTPSHHAAQFPNHSFKHED WT1 [126, 145] [161, 180]  5  603 EVRAGAFEHLPSLRQLDLSH 5T4 16 1996 FAESSDLTRHRRIHTGERPF ZNF165 [132, 151] [381, 400]  5  604 SPNTLKEIEASAEVSPTTMT ACRBP 17 1997 HMADMVTWLKETEVVQGKDR 5T4 [131, 150] [301, 320]  5  605 DQLQMSLYASGLLTGVVVDS ACTL8 17 1998 SQASYKIVIEGKPYTVNLMQ ADAM2 [131, 150] [43, 62]  5  606 SYLVLRPHDVAFLLVYREKS ADAM2 17 1999 IWTNKNLIVVDDVRKSVHLY ADAM29 [256, 275] [250, 269]  5  607 DSEEKQFSTMRSGFMQNEIT ADAM29 17 2000 ESRTLHRNEYGIASILDSYQ AFP [153, 172] [17, 36]  5  608 ASFVHEYSRRHPQLAVSVIL AFP 17 2001 VSDLIDSFLRNLHSVTGTLM AKAP-3 [352, 371] [330, 349]  5  609 DDFTASVSEGIMTYANSVVS AKAP-3 17 2002 SIDDLSFYVNRLSSLVIQMA AKAP-4 [275, 294] [213, 232]  5  610 QWIAASQFNVPMLYFMGDKD AKAP-4 17 2003 MKGKGTRDKVLIRIMVSRSE ANXA2 [779, 798] [278, 297]  5  611 RKYGKSLYYYIQQDTKGDYQ ANXA2 17 2004 SATEKVFKQQEIPSVFPKTS BRDT [309, 328] [166, 185]  5  612 EPEDGTALDVHFVSTLEPLS BAGE-2 17 2005 PADPAQLAAQMLGKVSSIHS CABYR [32, 51]; [169, 188] BAGE-3 [32, 51]  5  613 VGTIDMTLQSDIMTMFENNF BRDT 17 2006 ALIQPVDTISISSLRQFETV CAGE1 [927, 946] [105, 124]  5  614 DQSDVLMVDVATSMPVVIKE CABYR 17 2007 IDQKNLNGKSQYYIMFGPDI CALR3 [189, 208] [117, 136]  5  615 NNIENYSTNALIQPVDTISI CAGE1 17 2008 AVHQQQLLSWEEDRQKVLTL CCDC62 [96, 115] [49, 68]  5  616 ESGSIEYDWNLTSLKKETSP CALR3 17 2009 LQQSLNQDFHQKTIVLQEGN CDCA1 [192, 211] [190, 209]  5  617 ELHKRTEIIRSLTKKVKALE CCDC62 17 2010 LQESQKQLLQEAEVWKEQVS CTAGE2 [78, 97] [188, 207]  5  618 EREKLKSQEIFLNLKTALEK CDCA1 17 2011 EEPGVTPQPYLGLLLEELRR cTAGE5 [413, 432] [2, 21]  5  619 SPPASNMLKMEWSREVTTNA CRISP2 17 2012 VLQFHALEENVMVASEDSKL CTCFL [52, 71] [150, 169]  5  620 TDKTEKVAVDPETVFKRPRE CT45 17 2013 RDEMAAARGALKKNATMLYT CTNNA2 [2, 21] [203, 222]  5  621 PNKISTEHQSLVLVKRLLAV CT46 17 2014 QNETSYSRVLHGYAAQQLPS DCAF12 [17, 36] [58, 77]  5  622 NDHILIENRQLSRLMVGPHA CT47 17 2015 RLFLKGNLLRGIDSLFSAPM DKKL1 [137, 156] [57, 76]  5  623 SKSLKSQVAEAKMTFKRFQA CTAGE2 17 2016 NSYNVRRTEGFSVTLDDLAP EPHA2 [150, 169] [480, 499]  5  624 VGFFAVLFFLWRSFRSVRSR cTAGE5 17 2017 FGVELPGNEEFQVVKDAVLD FAM46D [50, 69] [87, 106]  5  625 SAVFHERYALIQHQKTHKNE CTCFL 17 2018 LSKSNNRLKSLSIQYLELDR FBXO39 [464, 483] [119, 138]  5  626 KNLMNAVVLTVKASYVASTK CTNNA2 17 2019 QLAEIDIKLQELSAASPTIS FSIP1 [870, 889] [319, 338]  5  627 IDESIYFSSDVVTGNVPLKV CXorf48 17 2020 TKLEISGDEFLNFLLKLNKQ GASZ [53, 72] [347, 366]  5  628 KRILVNLSMVENKLVELEHT CXorf61 17 2021 DKYWREYILSLEELVNGMYR Glypican-3 [78, 97] [293, 312]  5  629 NRRKSRRFIPRPPSVAPPPM DBPC 17 2022 RNQPLTFALQLHDPSGYLAE gp100 [176, 195] [234, 253]  5  630 EVRLQNETSYSRVLHGYAAQ DCAF12 17 2023 GTLDLVAVSSVKQNIIVTTE HAGE [54, 73] [451, 470]  5  631 LQGFSALFLKGNLLAGIDSL DKKL1 17 2024 PHAPGVQMQAIPEDAVHEDS HDAC2 [52, 71] [375, 394]  5  632 NLIAERQRVMAAQVALRRQQ DMRT1 17 2025 SSNAYNSRYWSNNPKVHRNT IGFS11 [106, 125] [313, 332]  5  633 RKAVTKRARLQRSYEMNERA DPPA2 17 2026 AKINKKKSLVSFKALIEESE JARID1B [150, 169] [768, 787]  5  634 KTQNDVDIADVAYYFEKDVK EpCAM 17 2027 NDIASMNLQAHLIPGLNLNA KOC1 [202, 221] [353, 372]  5  635 GLVTSASFRTASVSINQTEP EPHA2 17 2028 LLGSENDGTKIAASQAISAM KU-CT-1 [420, 439] [324, 343]  5  636 KQLENKKTGSKALAEFEEKM FAM133A 17 2029 ETRLALVQRNVAIMKSIIPA LDHC [46, 65] [104, 123]  5  637 IVKDARLNGSVASYILASHN FAM46D 17 2030 LQNFVRILLNEEDMNVIVVD LIPI [57, 76] [114, 133]  5  638 EFNVLEMEVMRRQLYAVNRR FATE1 17 2031 QGASAFPTTINFTRQRQPSE MAGE-A1 [128, 147] [59, 78]  5  639 RKLFYFKIWAFLDVSFVERI FBXO39 17 2032 ITKAEILESVIRNYEDHFPL MAGE-A10 [366, 385] [155, 174]  5  640 KAKGRNRRSHRAMRVAHLEL FMR1NB 17 2033 FGEPKRLLTQNWVQEKYLVY MAGE-A11 [7, 26] [352, 371]  5  641 PVFPQLSRSIISKLLNESET FSIP1 17 2034 ASEEEIWEELGVMGVYDGRE MAGE-A4 [439, 458] [217, 236]  5  642 KNVNQSLLDLYQLAVEKGDP FTHL17 17 2035 KLVHFLLLKYRAREPVTKAE MAGE-A6 [109, 128] [115, 134]  5  643 GWEIGYLDRTSQKLKRLLPI GASZ 17 2036 MLLGQKSQRYKAEEGLQAQG MAGE-A8 [24, 43] [1, 20]  5  644 SSLSHISPFSHSSHMLTTPT GATA-3 17 2037 NLSNDWDFPRNGLLMPLLGV MAGE-B1 [402, 421] [188, 207]  5  645 KHINQLLRTMSMPKGRVLDK Glypican-3 17 2038 SLLSSWDFPRRKLLMPLLGV MAGE-B2 [467, 486] [191, 210]  5  646 LNVSLADTNSLAVVSTQLIM gp100 17 2039 VDVSYKKSYKGANSKIEKKQ MAGE-B3 [567, 586] [75, 94]  5  647 RNRPGMLVLTPTRELALQVE HAGE 17 2040 ARPAVAARRGTTAMTSAYSR MAGE-B4 [314, 333] [317, 336]  5  648 FKPVMSKVMEMFQPSAVVLQ HDAC1 17 2041 PQSPLQGEEFQSSLQSPVSI MAGE-C1 [241, 260] [612, 631]  5  649 RQQTDMAVNWAGGLHHAKKS HDAC2 17 2042 ASEEVIWEVLNAVGVYAGRE MAGE-C2 [127, 146] [244, 263]  5  650 QSYKHLFQPVINQVVDFYQP HDAC3 17 2043 HESLSSFELSASRRGQKRNI MORC1 [230, 249] [606, 625]  5  651 SPSRQQSKAHRHRHRRGYSR HOM-TES-85 17 2044 VKDLLKGQSRLIFTYGLTNS MPHOSPH1 [59, 78] [137, 156]  5  652 LLLSLHGVAASLEVSESPGS IGFS11 17 2045 PPLTSSNHSTSPQLSTGVSF MUC-1 [12, 31] [1023, 1042]  5  653 DGFDLNKGIEAKIHTLLPWQ IL13RA2 17 2046 EVLFYQPDLKYLSFTLTKLS NLRP4 [93, 112] [688, 707]  5  654 EGDALRYMIERTVNWQHRAQ JARID1B 17 2047 KENFTGSETLKHLVLQFLQQ NXF2 [1248, 1267] [379, 398]  5  655 RNIPPHLQWEVLDSLLVQYG KOC1 17 2048 QEKENKYFEDIKILKEKNAE NY-BR-1 [86, 105] [1070, 1089]  5  656 DVGYGRSISSSSSLRRSSKE KU-CT-1 17 2049 SWDVDDLLLWKKIHRMVILT NYD-TSPG [621, 640] [333, 352]  5  657 SRLLQLHITMPFSSPMEAEL Lage-1 17 2050 EKSEEYAEQLHVQLADKDLY ODF2 [85, 104] [414, 433]  5  658 LKGEMMDLQHGSLFFSTSKI LDHC 17 2051 QKQPNTLRHVVIPDLQSSEA PASD1 [58, 77] [410, 429]  5  659 QTIESWREEGFPVGLKLAVL LEMD1 17 2052 RGTTEIGMIGSKPFSTVKYK PEPP2 [142, 161] [779, 798]  5  660 TYKIQALMLKSLTYPERPPL LIPI 17 2053 KSIGRGYNPRLTVIVVKKRV PIWIL1 [437, 456] [725, 744]  5  661 QSPQGASAFPTTINFTRQRQ MAGE-A1 17 2054 YHDPSAGMRSVVGFVASINL PIWIL2 [56, 75] [747, 766]  5  662 PRAHAEIRKMSLLKFLAKVN MAGE-A10 17 2055 SPNNFTLAFIVVKKRINTRF PIWIL3 [300, 319] [750, 769]  5  663 EESFSPTAMDAIFGSLSDEG MAGE-A11 17 2056 MSGRARVKARGIARSPSATE PIWIL4 [177, 196] [1, 20]  5  664 DGREDSVFAHPRKLLTQDLV MAGE-A12 17 2057 DVLLAQEVRPRTWKLQVLDL PRAME [232, 251] [105, 124]  5  665 AISRKMVELVHFLLLKYRAR MAGE-A2 17 2058 KFSGYPLYHSVYETYELVEK PSMA [108, 127] [545, 564]  5  666 KLLTQHFVQENYLEYRQVPG MAGE-A3 17 2059 RSVYSKQPYTEYISTRWYRA RAGE-1 [244, 263] [150, 169]  5  667 LLIIVLGTIAMEGDSASEEE MAGE-A4 17 2060 KMENVQPAPDNVLLTLRPRR SAGE1 [202, 221] [210, 229]  5  668 LDTQEEALGLVGVQAATTEE MAGE-A5 17 2061 LALWEAYREFESAIVEAARL SART3 [16, 35] [225, 244]  5  669 FPVIFSKASDSLQLVFGIEL MAGE-A6 17 2062 TEKENKMKDLTFLLEESRDK SCP-1 [147, 166] [276, 295]  5  670 QEALKLKVAELVHFLLHKYR MAGE-A9 17 2063 EYSQQFLTLFQQWDLDMQKA SCP3a [105, 124] [124, 143]  5  671 STESSVKDPVAWEAGMLMHF MAGE-B1 17 2064 AHEWARAIIESDQEQGRKLR SCRN1 [99, 118] [350, 369]  5  672 KIVGKRFREHFPEILKKASE MAGE-B2 17 2065 QDLQREISILQEQISHLQFV se57-1 [139, 158] [230, 249]  5  673 TVPSAFQFWYEEALRDEEER MAGE-B3 17 2066 IKEGLITADAEGDFIDARPG SLCO6A1 [298, 317] [550, 569]  5  674 KEVNPTTHSYILVSMLGPND MAGE-B4 17 2067 DQDTVMKAIQEARKMREQIQ SOX-6 [167, 186] [492, 511]  5  675 DEESVSASQKAIIFKRLSKD MAGE-B6 17 2068 QLANDSVNALSRILMELDGP SPAG1 [174, 193] [555, 574]  5  676 PVSPSFSSTLVSLFQSSPER MAGE-C1 17 2069 DVLQGELEAVKQAKLKLEEK SPAG9 [271, 290] [446, 465]  5  677 DSESSFTYTLDEKVAELVEF MAGE-C2 17 2070 TAVAVPSNIQGIRNLVTDAK SPO11 [132, 151] [199, 218]  5  678 STTHSFLFGALAELLDNARD MORC1 17 2071 SEEYLERQLQAEFIESGQYR TAF7L [22, 41] [363, 382]  5  679 SSKKTYSLRSQASIIGVNLA MPHOSPH1 17 2072 KWDPVVPFRNESAVTGYKML TAG-1 [1703, 1722] [931, 950]  5  680 LQRDISEMFLQIYKQGGFLG MUC-1 17 2073 KYTSDDFWYRAVVLGTSDTD TDRD1 [1069, 1088] [1000, 1019]  5  681 AETEPERHLGSYLLDSENTS NKX3.1 17 2074 YRYLNSWRPSLFYKIANVQT TEKT5 [91, 110] [44, 63]  5  682 RNKSVRYLDLSANVLKDEGL NLRP4 17 2075 TGLKRLSSFIGAGSPSLVKA TEX14 [805, 824] [1283, 1302]  5  683 STWQELILLSSLTVYSKQIF NR6A1 17 2076 NDKNSKVLMQNAATYWNELP TEX15 [322, 341] [2618, 2637]  5  684 QMEMLKLTMNKRYNVSQQAL NXF2 17 2077 RKRRRRRRLMELAEPKINWQ THEG [213, 232] [120, 139]  5  685 ITKRSEQIVEFLLIKNANAN NY-BR-1 17 2078 QVKHLYNWNLPPRRILFIKH TPTE [124, 143] [399, 418]  5  686 LVFRVDETTPAVVQSVLLER NYD-TSPG 17 2079 IKLDSSKELLNRQLVAKDQE TSGA10 [87, 106] [516, 535]  5  687 LELEIIVLNDRVTDLVNQQQ ODF2 17 2080 ADGMWPQFRTIQEKEVIILN TSP50 [458, 477] [250, 269]  5  688 SPGPRYNVNPKILRTGKDLG ODF3 17 2081 FFNWFSDHNFAGSNKIAEIL TSPY1 [65, 84] [257, 276]  5  689 AFSKKWLDLSRSLFYQRWPV ODF4 17 2082 PWHRLFLLRWEQEIQKLTGD TYR [99, 118] [209, 228]  5  690 YLLKTKAIVNASEMDIQNVP OIP5 17 2083 LQPVETKAHFDSSEPQLLWD ZNF165 [172, 191] [163, 182]  5  691 ILRTQLLQQLYTSKAVSDEA PASD1 18 2084 YLPRDVLAQLPSLRHLDLSN 5T4 [175, 194] [224, 243]  5  692 VYQKRLMDEAKILKSLHHPN PBK 18 2085 SIIKEGIESQASYKIVIEGK ADAM2 [77, 96] [35, 54]  5  693 WQQRQFYNKQSTLPRHSTLS PEPP2 18 2086 KVLLFGLEIWTNKNLIVVDD ADAM29 [506, 525] [242, 261]  5  694 RRSIAGFVASINEGMTRWFS PIWIL1 18 2087 EGLSPNLNRFLGDADFNQFS AFP [641, 660] [324, 343]  5  695 KWYSRVVFQMPHQEIVDSLK PIWIL2 18 2088 AQDKAESYSLISMKGMGDPK AKAP-3 [770, 789] [397, 416]  5  696 LHSWLILYSRSSHREAMSLK PIWIL3 18 2089 RNQSLEFSTMKAEMKERDKG AKAP-4 [507, 526] [461, 480]  5  697 QENPAAFVRAIQQYVDPDVQ PIWIL4 18 2090 AKGRRAEDGSVIDYELIDQD ANXA2 [526, 545] [175, 194]  5  698 HQAGAQEAQPLQPSHFLDIS PLAC1 18 2091 PSVFPKTSISPLNVVQGASV BRDT [179, 198] [178, 197]  5  699 SLLKDEALAIAALELLPREL PRAME 18 2092 YRGNTTMDIKDLVKQFHQIK CABYR  [33, 52] [47, 66]  5  700 GDRSIFEGATRYSRITGGME PRSS5 5 18 2093 ERPEIVSTWSSAGISWRSEA CAGE1 [54, 73] [260, 279]  5  701 STNEVTRIYNVIGTLAGAVE PSMA 18 2094 TQNGRFYAISARFKPFSNKG CALR3 [348, 367] [69, 88]  5  702 VFYEIASLQPLFPGVNELDQ RAGE-1 18 2095 QERTNSELHNLRQIYVKQQS CCDC62 [191, 210] [275, 294]  5  703 QQRKKMEKEAQRLMKKEQNK RCAS1 18 2096 YAKIDEKTAELKRKMFKMST CDCA1 [188, 207] [445, 464]  5  704 QSRTDKVLSTAPPQLVHMAA SAGE1 18 2097 EEKLSKVDEMISHATEELET CTAGE2 [121, 140] [381, 400]  5  705 NAKYANMWLEYYNLERAHGD SART3 18 2098 LLLEELRRVVAALPEGMRPD cTAGE5 [504, 523] [14, 33]  5  706 MEESNKARAAHSFVVTEFET SCP-1 18 2099 QEGVQVVVQQPGPGLLWLEE CTCFL [363, 382] [105, 124]  5  707 KILQQSRIVQSQRLKTIKQL SCP3a 18 2100 PKSLEIRTLTVERLLEPLVT CTNNA2 [159, 178] [14, 33]  5  708 GETAKEALDVIVSLLEEHGQ SCRN1 18 2101 NTLFVVDVQTSQITKIPILK DCAF12 [120, 139] [110, 129]  5  709 IEETEYVKKIRTTLQKIRTQ se57-1 18 2102 AAPIHDADAQESSLGLTGLQ DKKL1 [31, 50] [30, 49]  5  710 EKSYDISSGLVAIFIAFYGD SLCO6A1 18 2103 GKIPIRWTAPEAISYRKFTS EPHA2 [148, 167] [777, 796]  5  711 SYNHKQIEQLYAAQLASMQV SOX-6 18 2104 LKFVSSLRRQFEFSVDSFQI FAM46D [360, 379] [159, 178]  5  712 ISGKEEETSVTILDSSEEDK SP17 18 2105 AKLARQATNLKVNFFFERIM FBXO39 [92, 111] [274, 293]  5  713 SGDYEEAVMYYTRSISALPT SPAG1 18 2106 TQIPPEEYEMQMQKLNKDFT FSIP1 [222, 241] [202, 221]  5  714 GREVENLILENTQLLETKNA SPAG9 18 2107 IAKRNKHHEIFNLLSFTLNP GASZ [407, 426] [221, 240]  5  715 IDVVESEAVSVLHHWLKKTE SPATA19 18 2108 NYTNAMFKNNYPSLTPQAFE Glypican-3 [28, 47] [124, 143]  5  716 YATKRDIYYTDSQLFGNQTV SPO11 18 2109 VNNTIINGSQVWGGQPVYPQ gp100 [130, 149] [105, 124]  5  717 HRLRERKQLVIYEEISDPEE SSX-1 18 2110 KTGKVRILIATDLASRGLDV HAGE [166, 185]; [534, 553] SSX-2 [166, 185]  5  718 QIPEKIQKAFDDIAKYFSKE SSX-2 18 2111 DVDKLHFTPRIQRLNELEAQ JARID1B [16, 35] [77, 96]  5  719 PGKPTTSEKINMISGVLQRY SSX-3 18 2112 GPPEAQFKAQGRIYGKIKEE KOC1 [142, 161] [458, 477]  5  720 GKHAWTHRLRERKQLVVYEE 55X-4 18 2113 LANMSAEYTSKVQIFEHGGL KU-CT-1 [160, 179] [133, 152]  5  721 ATLPPFMRNKRVADFQGNDF SSX-5 18 2114 GTDSDKEHWKNIHKQVIQSA LDHC [65, 84] [219, 238]  5  722 AFLSVKKQFEELTLGEFLKL Survivin 18 2115 LEFSQLSVKDSFRDLFIPRI LIPI [85, 104] [43, 62]  5  723 AEGPSTLDEGLFLRSQEAAA SYCE1 18 2116 ALAETSYVKVLEYVIKVSAR MAGE-A1 [219, 238] [270, 289]  5  724 DEVPDEVENQFILRLPLEHA TAF7L 18 2117 ESVIRNYEDHFPLLFSEASE MAGE-A10 [92, 111] [162, 181]  5  725 NESAVTGYKMLYQNDLHLTP TAG-1 18 2118 RAHAETSKMKVLEYIANANG MAGE-A11 [940, 959] [389, 408]  5  726 DKTIQANVLEIISPNLFYAL TDRD1 18 2119 PDAESLFREALSNKVDELAH MAGE-A4 [939, 958] [100, 119]  5  727 DNIKHSQNMRANSIQLREEA TEKT5 18 2120 DLESEFQAALSRKVAKLVHF MAGE-A6 [301, 320] [100, 119]  5  728 QGFIHRSLSSYAVHIISPGE TEX14 18 2121 EEIWKFMNVLGAYDGEEHLI MAGE-B1 [370, 389] [218, 237]  5  729 VTELEYNYNQFSTLLKNVMS TEX15 18 2122 RGQKSKLRAREKRRKARDET MAGE-B2 [2198, 2217] [3, 22]  5  730 PKIRDNFWSMPMSEVSQVSR THEG 18 2123 EFLNKMRIYDGKKHFIFGEP MAGE-B3 [238, 257] [225, 244]  5  731 SFYFWLHTSFIENNRLYLPK TPTE 18 2124 GEPRKLITQDLVQEKYLEYQ MAGE-B4 [493, 512] [239, 258]  5  732 VLGEAWRDQVDWSRLLRDAG TRAG-3 18 2125 DDSTATESASSSVMSPSFSS MAGE-C1 [45, 64] [1122, 1141]  5  733 KARQSEADNNTLKLELITAE TSGA10 18 2126 LLVIYNLKLLLNGEPELDVK MORC1 [430, 449] [197, 216]  5  734 DPEAVARRWPWMVSVRANGT TSP50 18 2127 LPRTLNVLFDSLQERLYTKM MPHOSPH1 [116, 135] [172, 191]  5  735 FWANVIANHPQMSALITDED TSPY1 18 2128 LFEMQDPAFVKQAVNLLQEA NLRP4 [158, 177] [557, 576]  5  736 DSFQDYIKSYLEQASRIWSW TYR 18 2129 FFVQDASAASALKDVSYKIY NXF2 [458, 477] [166, 185]  5  737 GATLKGVAAGSSSSVKWTEG WT1 18 2130 KKEIAMLKLEIATLKHQYQE NY-BR-1 [244, 263] [1052, 1071]  5  738 WRGRSTYRPRPRRSLQPPEL XAGE-2 18 2131 LTFVMPNDYTKFVAEYFQER NYD-TSPG [3, 22] [180, 199]  5  739 GKTFRVSSHLIRHFRIHTGE ZNF165 18 2132 EMDGAAAAKQVMALKDTIGK ODF2 [434, 453] [215, 234]  6  740 LQGLRRLELASNHFLYLPRD 5T4 18 2133 KDEVYQKIILKFPLLNSETH PASD1 [209, 228] [86, 105]  6  741 EDVRVSGWLQTEFLSFQDGD ACPBP 18 2134 NLRDNPFRTTQTRRRDDKEL PEPP2 [452, 471] [940, 959]  6  742 MQRVAPEMFFSPQVFEQPGP ACTL8 18 2135 QETAQLVGSTASQQPGYIQP PIWIL1 [251, 270] [16, 35]  6  743 GLGGLRMDSNFDSLPVQITV ADAM2 18 2136 AMDQARELVNMLEKIAGPIG PIWIL2 [10, 29] [614, 633]  6  744 LQINDFAYEIKPLAFSTTFE ADAM29 18 2137 SHREAMSLKGHLQSVTAPMG PIWIL3 [127, 146] [518, 537]  6  745 DLATIFFAQFVQEATYKEVS AFP 18 2138 ARLVDNIQRNTNARFELETW PIWIL4 [45, 64] [415, 434]  6  746 NRNVNFAMKSETKLREKMYS AKAP-3 18 2139 SQLTTLSFYGNSISISALQS PRAME [417, 436] [406, 425]  6  747 SKGLMVYANQVASDMMVSLM AKAP-4 18 2140 WNLLHETDSAVATARRPRWL PSMA [330, 349] [2, 21]  6  748 SDTSGDFRKLMVALAKGRRA ANXA2 18 2141 GEGTFSEVMKMQSLRDGNYY RAGE-1 [161, 180] [11, 30]  6  749 VDAVKLQLPDYYTIIKNPMD BRDT 18 2142 MSTRDQYAAVTHNIREEKIN SAGE1 [56, 75] [616, 635]  6  750 SKPRLVVPYGLKTLLEGISR CABYR 18 2143 LDRQLKVKDLVLSVHNRAIR SART3 [4, 23] [354, 373]  6  751 YHSLNEELDFLVTSYEEIIE CAGE1 18 2144 QENRKIIEAQRKAIQELQFG SCP-1 [694, 713] [135, 154]  6  752 AISARFKPFSNKGKTLVIQY CALR3 18 2145 MFRQQQKILQQSRIVQSQRL SCP3a [76, 95] [153, 172]  6  753 DKELNDMVAVHQQQLLSWEE CCDC62 18 2146 SLDLLMKKIKGKDLQLLEMN se57-1 [41, 60] [87, 106]  6  754 LKTEENSFKRLMIVKKEKLA CDCA1 18 2147 EPHIKRPMNAFMVWAKDERR SOX-6 [334, 353] [618, 637]  6  755 QLQVQREIVNKHNELRKAVS CPISP2 18 2148 IIEAKMELEEVTRLLNLKDK SPAG1 [33, 52] [724, 743]  6  756 AMSKAKKLMTGHAIPPSQLD CT45 18 2149 SVTKAERSHLIVWQVMYGNE SPAG9 [51, 70] [1302, 1321]  6  757 SNESSMLSTDTKKASILLIR CT46 18 2150 ITGKGVPDLNTRLLVKKLWD SPO11 [136, 155] [247, 266]  6  758 EEGEQAAGLAAVPRGGSAEE CT47 18 2151 PLKNVRKKRFRKTQKKVPDV TAF7L [64, 83] [225, 244]  6  759 TELYQENEMKLYRKLIVEEK CTAGE2 18 2152 SSSLSIKWDPVVPFRNESAV TAG-1 [356, 375] [925, 944]  6  760 SKSLKSQVAEAKMTFKIFQM cTAGE5 18 2153 QKKAHVLYIDYGNEEIIPLN TDRD1 [180, 199] [341, 360]  6  761 NMAFVTSGELVRHRRYKHTH CTCFL 18 2154 ELDRLLTENQNLETVKRRLE TEKT5 [319, 338] [158, 177]  6  762 RGSQKKHISPVQALSEFKAM CTNNA2 18 2155 FDDWDWQNGSLSSLSLPEST TEX14 [931, 950] [696, 715]  6  763 VTSINEDNIYISNSIYFSIA CXorf48 18 2156 QHSVEYEGNIHTSLAIAQKL TEX15 [118, 137] [343, 362]  6  764 NSTALALVRPSSSGLINSNT CXorf61 18 2157 AAQMAVPSSRILQLSKPKAP THEG [34, 53] [258, 277]  6  765 HQTAIKRNNPRKFLRSVGDG DBPC 18 2158 DIKLLRNIPRWTHLLRLLRL TPTE [122, 141] [180, 199]  6  766 SRVPVYAHITHKALKDIPKE DCAF12 18 2159 EESENRQMMEQLRKANEDAE TSGA10 [227, 246] [406, 425]  6  767 STLVIPSAAAPIHDADAQES DKKL1 18 2160 SAKEGTAFRMEAVQEGAAGV TSPY1 [22, 41] [33, 52]  6  768 QSVPQFFTFEDAPSYPEARA DMRT1 18 2161 TERRLLVRRNIFDLSAPEKD TYR [302, 321] [113, 132]  6  769 GRLLSADTKGWVRLQFHAGQ DPPA2 18 2162 AQDEGFGKILTHKNTVRGEI ZNF165 [228, 247] [250, 269]  6  770 FITSILYENNVITIDLVQNS EpCAM 19 2163 SSSAPFLASAVSAQPPLPDQ 5T4 [180, 199] [42, 61]  6  771 AISYRKFTSASDVWSFGIVM EPHA2 19 2164 GLRGVLQFENVSYGIEPLES ADAM2 [788, 807] [113, 132]  6  772 SVDSFQIVLDPMLPFYSDKN FAM46D 19 2165 EIPNMSDHTTVHWARFNDIM ADAM29 [172, 191] [561, 580]  6  773 PGTDAVAQTSLEEFNVLEME FATE1 19 2166 VMKNFGTRTFQAITVTKLSQ AFP [116, 135] [226, 245]  6  774 MGKRLDYLNLKGARLTVEQG FBXO39 19 2167 GRRDARSFVEAAGTTNFPAN AKAP-3 [160, 179] [543, 562]  6  775 KRKRKSEMLQKAARGREEHG FMR1NB 19 2168 NRLSSLVIQMAHKEIKEKLE AKAP-4 [234, 253] [222, 241]  6  776 KRPSFLDDPLYGISVSLSSE FSIP1 19 2169 LYYYIQQDTKGDYQKALLYL ANXA2 [533, 552] [315, 334]  6  777 HFLESHYLHEQVKTIKELGG FTHL17 19 2170 SSDELFNQFRKAAIEKEVKA BRDT [132, 151] [821, 840]  6  778 HHEIFNLLSFTLNPLEGKLQ GASZ 19 2171 IKIGSEKSLHLEVEITSIVS CABYR [227, 246] [409, 428]  6  779 DQPRWVSHHHPAVLNGQHPD GATA-3 19 2172 ESRNDKEMLQLQFKKIKANY CAGE1 [6, 25] [398, 417]  6  780 DMVNELFDSLFPVIYTQLMN Glypican-3 19 2173 KIDGQSIESGSIEYDWNLTS CALR3 [165, 184] [185, 204]  6  781 VLYRYGSFSVTLDIVQGIES gp100 19 2174 NQKSLFKDQKFEAMLVQQNR CCDC62 [476, 495] [348, 367]  6  782 MSSTDKVIVFVSRKAVADHL HAGE 19 2175 AHQEALMKLERLDSVPVEEQ CDCA1 [484, 503] [158, 177]  6  783 ELLKYHQRVLYIDIDIHHGD HDAC1 19 2176 SENQKLQQKLKVMTELYQEN CTAGE2 [162, 181]; [343, 362] HDAC2 [163, 182]  6  784 FKPIISKVMEMYQPSAVVLQ HDAC2 19 2177 MKLHRKLTVEENYRLEKEEK cTAGE5 [242, 261] [394, 413]  6  785 QNSRQYLDQIRQTIFENLKM HDAC3 19 2178 SYASRDTYKLKRHMRTHSGE CTCFL [349, 368] [376, 395]  6  786 GDLVDTQSDLIATQRDLIAT HOM-TES-85 19 2179 QVEVAIEALSANVPQPFEEN CTNNA2 [236, 255] [588, 607]  6  787 TGTMPATNVSIFINNTQLSD IGFS11 19 2180 KSDARHNVSRVPVYAHITHK DCAF12 [95, 114] [219, 238]  6  788 EIKVNPPQDFEIVDPGYLGY IL13RA2 19 2181 HTELHPRVAFWIIKLPRRRS DKKL1 [29, 48] [160, 179]  6  789 IEEIPAYLPNGAALKDSVQR JARID1B 19 2182 GTNFQKRLFTKIDTIAPDEI EPHA2 [997, 1016] [131, 150]  6  790 LDKLNGFQLENFTLKVAYIP KOC1 19 2183 KESYPVVVAESMYGDFQEAM FAM46D [136, 155] [196, 215]  6  791 KKNSYHFSAGFGSPIEDKSE KU-CT-1 19 2184 NPYNAVLTKKFQVTMRGLLS FBXO39 [643, 662] [98, 117]  6  792 GARRPDSRLLQLHITMPFSS Lage-1 19 2185 AWQSKEEMENTKKFLSLTAV FSIP1 [79, 98] [162, 181]  6  793 SILKNLRRVHPVSTMVKGLY LDHC 19 2186 GAEVNTQDENGYTALTWAAR GASZ [262, 281] [172, 191]  6  794 LSTEKSKKLKKWPEASTTKR LEMD1 19 2187 KVFGNFPKLIMTQVSKSLQV Glypican-3 [80, 99] [206, 225]  6  795 SRGATTFIYNRAVKNTRKVA LIPI 19 2188 FSVPQLPHSSSHWLRLPRIF gp100 [135, 154] [625, 644]  6  796 ITKKVADLVGFLLLKYRARE MAGE-A1 19 2189 LKNITYLVLDEADKMLDMGF HAGE [102, 121] [387, 406]  6  797 QDRIATTDDTTAMASASSSA MAGE-A10 19 2190 QTRVKLNFLDQIAKYWELQG JARID1B [342, 361] [96, 115]  6  798 GSVIKNYEDYFPEIFREASV MAGE-A11 19 2191 HSVPKRQRIRKLQIRNIPPH KOC1 [250, 269] [72, 91]  6  799 KASEYLQLVFGIEVVEVVRI MAGE-A12 19 2192 GSKDFFNNQGIPQLIQLLKS KU-CT-1 [153, 172] [348, 367]  6  800 SKASEYLQLVFGIEVVEVVP MAGE-A2 19 2193 MSTVKEQLIEKLIEDDENSQ LDHC [152, 171] [1, 20]  6  801 EEQEAASSSSTLVEVTLGEV MAGE-A3 19 2194 AKFVDVIHSDSNGLGIQEPL LIPI [34, 53]; [224, 243] MAGE-A6 [34, 53]  6  802 ATEEQEAASSSSTLVEVTLG MAGE-A6 19 2195 HAEIRKMSLLKFLAKVNGSD MAGE-A10 [32, 51] [303, 322]  6  803 VRVNARVRISYPSLHEEALG MAGE-A8 19 2196 VYAGREHELFGEPKELLTQN MAGE-A11 [294, 313] [343, 362]  6  804 VGKEHMFYGEPRKLLTQDWV MAGE-A9 19 2197 KISGGPRISYPLLHEWALRE MAGE-A6 [231, 250] [292, 311]  6  805 MHFILRKYKMREPIMKADML MAGE-B1 19 2198 RSSVRARRRTTATTFRARSR MAGE-B1 [116, 135] [318, 337]  6  806 ESLLSSWDFPRRKLLMPLLG MAGE-B2 19 2199 VDLTDEESLLSSWDEPERKL MAGE-B2 [190, 209] [184, 203]  6  807 VQFLMEMYKMKKPIMKADML MAGE-B3 19 2200 RGQTQDHQGAQITATNKKKV MAGE-B3 [119, 138] [19, 38]  6  808 FPEIFRKVSQRTELVFGLAL MAGE-B4 19 2201 AEKEESPSSSSSVLRDTASS MAGE-B4 [147, 166] [33, 52]  6  809 DSSGESYTLVSKLGLPSEGI MAGE-B6 19 2202 RTHSTFEGFPQSLLQIPMTS MAGE-C1 [256, 275] [325, 344]  6  810 EFLAMLKNTVPITFPSSYKD MAGE-C1 19 2203 PMEDVNLSSGHIARVSVSGS MORC1 [1086, 1105] [780, 799]  6  811 PRELLTKVWVQGHYLEYREV MAGE-C2 19 2204 ENNEGLRAFLLTIENELKNE MPHOSPH1 [270, 289] [882, 901]  6  812 EKPLNSFQYQRRQAMGIPFI MORC1  19 2205 YQPDLKYLSFTLTKLSRDDI NLRP4 [464, 483] [692, 711]  6  813 RAKRKLYTSEISSPIDISGQ MPHOSPH1 19 2206 TIPYGIKYDKAWLMNSIQSH NXF2 [1775, 1794] [128, 147]  6  814 TSPQLSTGVSFFFLSFHISN MUC-1 19 2207 LQSKNMWLQQQLVHAHKKAD NY-BR-1 [1032, 1051] [1270, 1289]  6  815 TETQVKIWFQNRRYKTKRKQ NKX3.1 19 2208 RGKAPDPQAGNFVLVFPFNE NYD-TSPG [164, 183] [545, 564]  6  816 STTSVYSSFVFNLFTPEGAE NLRP4 19 2209 HKAEVEAIMEQLKELKQKGD ODF2 [367, 386] [377, 396]  6  817 RSLDPQSYSLIHQLLSAEDL NR6A1 19 2210 HDAIQNQQNALELMMDHLQK PASD1 [244, 263] [392, 411]  6  818 DNEWNYTRAGQAFTMLQTEG NXF2 19 2211 RSWTYGITRGGRVFFINEEA PEPP2 [596, 615] [14, 33]  6  819 SSEIVGMLLQQNVDVFAADI NY-BR-1 19 2212 GLTDKMRNDFNVMKDLAVHT PIWIL1 [161, 180] [391, 410]  6  820 DDMYIVQKYISNPLLIGRYK NYD-TSPG 19 2213 ENYQPKMVVFVVQKKISTNL PIWIL2 [234, 253] [841, 860]  6  821 ATSAQNIEFLQVIAKREEAI ODF2 19 2214 FRRTFKLLDFEQVGRNYYTK PIWIL3 [675, 694] [229, 248]  6  822 PAAYRQTDVRVTKFKAPQYT ODF3 19 2215 SATEVGRIQASPLPRSVDLS PIWIL4 [182, 201] [17, 36]  6  823 NIWIFELERNVSIPIGWSYF ODF4 19 2216 MPMQDIKMILKMVQLDSIED PRAME [165, 184] [218, 237]  6  824 NNVVLEAPFLVGIEGSLKGS OIP5 19 2217 FLDELKAENIKKFLYNFTQI PSMA [111, 130] [61, 80]  6  825 RADPVDLEFSVDQVDSVDQE PASD1 19 2218 TPAQKILTKFKQSRAMNFDF RAGE-1 [298, 317] [220, 239]  6  826 FDDEAYYAALGTRPPINMEE PBK 19 2219 NNSQPAPGNILSTAPPWLRH SAGE1 [266, 285] [635, 654]  6  827 SQEIEMHADNPAAIQTVVLQ PEPP2 19 2220 ESDGDEYAMASSAESSPGEY SART3 [674, 693] [64, 83]  6  828 IYTRRNYEAANSLIQNLFKV PIWIL1 19 2221 ELEDIKVSLQRSVSTQKALE SCP-1 [499, 518] [323, 342]  6  829 AASIRRTDGGLFLLADVSHK PIWIL2 19 2222 SILQEQISHLQFVIHSQHQN se57-1 [364, 383] [237, 256]  6  830 KKKAIQLYRHGTSLEIWLGY PIWIL3 19 2223 EKQPYYEEQARLSKIHLEKY SOX-6 [248, 267] [666, 685]  6  831 SNKAKAFDGAILFLSQKLEE PIWIL4 19 2224 RALRKDKPAATAASFTAEEW SPAG1 [151, 170] [73, 92]  6  832 QLTTLSFYGNSISISALQSL PRAME 19 2225 GVDGQWDLSNYHLLDLGRPH SPAG9 [407, 426] [1028, 1047]  6  833 EAEVGEFPWQVSIQARSEPF PRSS55 19 2226 PMGPEASFFDVLDRHRESLL SPO11 [73, 92] [5, 24]  6  834 SFDSLFSAVKNFTEIASKFS PSMA 19 2227 NEVKRLLRSDAEAVSTRWEV TAF7L [628, 647] [263, 282]  6  835 KRRGPAYVMELPKLKLSGVV RAGE-1 19 2228 QTTFGPVFEDQPLSVLFPEE TAG-1 [339, 358] [32, 51]  6  836 IRKTQKIVIKKREPLNFGIP RCAS1 19 2229 DYGNEEIIPLNRIYHLNRNI TDRD1 [102, 121] [350, 369]  6  837 PAPDNVLLTLRPRRINMTDT SAGE1 19 2230 QTQLAKTLQEIFQAENTIML TEKT5 [216, 235] [357, 376]  6  838 APRLAEYQAYIDFEMKIGDP SART3 19 2231 RITIGTLFSVLHERRSQFPV TEX14 [307, 326] [328, 347]  6  839 HDLEIQLTAITTSEQYYSKE SCP-1 19 2232 REDNAVSAATALLESEEDTI TEX15 [479, 498] [544, 563]  6  840 RLKTIKQLYEQFIKSMEELE SCP3a 19 2233 SKPKAPATLLEEWDPVPKPK THEG [171, 190] [272, 291]  6  841 NTREPAAEIEALLGMDLVRL SCRN1 19 2234 FTKEVNEWMAQDLENIVAIH TPTE [96, 115] [318, 337]  6  842 EAGAAALRNVAQRLFENYQT se57-1 19 2235 ISMQNLEALLVANRDKEYQS TSGA10 [121, 140] [562, 581]  6  843 DFQKEYQLKTIEKLALEKSY SLCO6A1 19 2236 VNITEYRASHSTPIEWYPDY TSPY1 [132, 151] [222, 241]  6  844 AAQLASMQVSPGAKMPSTPQ SOX-6 19 2237 NFSFRNTLEGFASPLTGIAD TYR [371, 390] [337, 356]  6  845 SNTHYRIPQGFGNLLEGLTR SP17 19 2238 GTDEAVLQVQAHEHGQEIFQ ZNF165 [6, 25] [130, 149]  6  846 TPNNHFTLEDIQALKRQYEL SPAG1 20 2239 AALLAGRALQGLRRLELASN 5T4 [907, 926] [201, 220]  6  847 STAHSRIRKERPISLGIFPL SPAG9 20 2240 ILSSLELWIDENKIATTGEA ADAM2 [190, 209] [224, 243]  6  848 HLSKSDLLANQSQEVLEERT SPATA19 20 2241 RDFNQFSSGEKNIFLASFVH AFP [93, 112] [337, 356]  6  849 RSSWENIKFEDSVGLQMVSH SPO11 20 2242 AREGGRFFPRERKRFRGQER AKAP-3 [75, 94] [254, 273]  6  850 GKHAWTHRLRERKQLVIYEE SSX-1 20 2243 GGGQSAKALSVKQLESHRAP AKAP-4 [160, 179] [588, 607]  6  851 GFKAILPSFMANKRVTDFQG SSX-3 20 2244 IQNKPLYFADRLYDSMKGKG ANXA2 [62, 81] [263, 282]  6  852 ISEKLRKAFDDIAKYFSKKE SSX-4 20 2245 YLQKVVLKDLWKHSFSWPFQ BRDT [17, 36] [34, 53]  6  853 HRVRERKQLVIYEEISDPQE SSX-5 20 2246 TEKPEFQSQVYNYAKDNNIK CAGE1 [166, 185] [138, 157]  6  854 MGQHKDLWDFHMPERLAKEI SYCE1 20 2247 QMVTDLELSTLLPISHENLT CCDC62 [166, 185] [643, 662]  6  855 DADSSAQAAAQAPENFQEGK TAF7L 20 2248 PKAKRTSRFLSGIINFIHFR CDCA1 [66, 85] [112, 131]  6  856 AAVALVSSSAWSSALGSQTT TAG-1 20 2249 KLLEKFSLVQKEYEGYEVES CTAGE2 [15, 34] [61, 80]  6  857 IMLLKNFMLNQNVMLSVKGI TDRD1 20 2250 RAVVAALPEGMRPDSNLYGF cTAGE5 [1072, 1091] [20, 39]  6  858 LVNEVFTIDDTLQTLKLRLR TEKT5 20 2251 EQFTKIKELELMPEKGLKEE CTCFL [415, 434] [11, 30]  6  859 LLQISDALRYLHFQGFIHRS TEX14 20 2252 PQVINAALTLAARPQSKVAQ CTNNA2 [357, 376] [460, 479]  6  860 KDLRRHKIYGRKRRLTSQDS TEX15 20 2253 VGSQAHVSFLDPRQPSYNVK DCAF12 [933, 952] [313, 332]  6  861 EDIPEISRLSISQKLPSTTM THEG 20 2254 GERPYWELSNHEVMKAINDG EPHA2 [97, 116] [814, 833]  6  862 ERRQQYFSDLFNILDTAIIV TPTE 20 2255 LIGQGIIVKDARLNGSVASY FAM46D [148, 167] [51, 70]  6  863 SEIELLASQMANERISMQNL TSGA10 20 2256 ELDRLVWRNSIRSSFISSLS FBXO39 [548, 567] [135, 154]  6  864 SDVPVLQVIMHSRYRAQRFW TSP50 20 2257 FLDDPLYGISVSLSSEDQHL FSIP1 [179, 198] [537, 556]  6  865 DRRGAVIQSVPGFWANVIAN TSPY1 20 2258 LDRGANASFEKDKQSILITA GASZ [146, 165] [99, 118]  6  866 EKDKFFAYLTLAKHTISSDY TYR 20 2259 YRIYDMENVLLGLFSTIHDS Glypican-3 [130, 149] [311, 330]  6  867 TGSQALLLRTPYSSDNLYQM WT1 20 2260 HRRGSRSYVPLAHSSSAFTI gp100 [210, 229] [190, 209]  6  868 GKAFRHSSKLARHQRIHTGE ZNF165 20 2261 MGFEPQIMKILLDVRPDRQT HAGE [350, 369] [404, 423]  7  869 FSGSNASVSAPSPLVELILN 5T4 20 2262 KPPLEKILPLLASLQRIRVR JARID1B [162, 181] [1226, 1245]  7  870 SQPVSILSPNTLKEIEASAE ACRBP 20 2263 DAKVRMVIITGPPEAQFKAQ KOC1 [124, 143] [448, 467]  7  871 IERGRILNWEGVQYLWSFVL ACTL8 20 2264 RAKLQELNAIPPILDLLKSE KU-CT-1 [67, 86] [184, 203]  7  872 QDFAKYIEMHVIVEKQLYNH ADAM2 20 2265 MIEEPRLYEKNKPFYKLQEV LIPI [174, 193] [386, 405]  7  873 SKHLPVFTYTDQGAILEDQP ADAM29 20 2266 FPTVRPADLTRVIMPLEQRS MAGE-A11 [75, 94] [98, 117]  7  874 YKEVSKMVKDALTAIEKPTG AFP 20 2267 REKRRKAREETQGLKVAHAT MAGE-B1 [60, 79] [12, 31]  7  875 KQLQAVLQWVAASELNVPIL AKAP-3 20 2268 WGPRAYAETSKMKVLEFLAK MAGE-B2 [771, 790] [275, 294]  7  876 KQLQAVLQWIAASQFNVPML AKAP-4 20 2269 ATEEKIWEFLNKMRIYDGKK MAGE-B3 [772, 791] [218, 237]  7  877 PKWISIMTERSVPHLQKVFD ANXA2 20 2270 STSTERSLKDSLTRKTKMLV MAGE-B4 [211, 230] [98, 117]  7  878 LKAVHQQLQVLSQVPFRKLN BRDT 20 2271 EVIKRKVVEFLAMLKNTVPI MAGE-C1 [430, 449] [1078, 1097]  7  879 TMYRGNTTMDIKDLVKQFHQ CABYR 20 2272 RKLQSIIYDSNTRGIHNEIS MORC1 [45, 64] [883, 902]  7  880 EKVSDIMLQKLKSLHLKKKT CAGE1 20 2273 LDVQIQHVVEGKRALSELTQ MPHOSPH1 [645, 664] [1135, 1154]  7  881 DSRFGHFRLSSGKFYGHKEK CALR3 20 2274 RTGYTKTYQAHAKQKFSRLW NLRP4 [43, 62] [92, 111]  7  882 SRQMVTDLELSTLLPISHEN CCDC62 20 2275 KYFEDSRNMKTLKDPYLKGE NXF2 [641, 660] [439, 458]  7  883 KSSADKMQQLNAAHQEALMK CDCA1 20 2276 AFEPAIEMQKSVPNKALELK NY-BR-1 [146, 165] [704, 723]  7  884 PASNMLKMEWSREVTTNAQR CRISP2 20 2277 GLNVKRIIQELQKLMNKQHS NYD-TSPG [54, 73] [573, 592]  7  885 SQIDDFTGFSKDRMMQKPGS CT45 20 2278 ANVFGDGPYSTFLTSSPIRS ODF2 [71, 90] [805, 824]  7  886 KKASILLIRKIYILMQNLGP CT46 20 2279 KLNWIPSFPTYDYFNQVTLQ PASD1 [147, 166] [20, 39]  7  887 DSGPDSSDVVPAAEVVGVAG CT47 20 2280 LPRNMPSHRAQIMARYPEGY PEPP2 [37, 56] [439, 458]  7  888 LEGERNQIYIQLSEVDKTKE CTAGE2 20 2281 HAFDGTILFLPKRLQQKVTE PIWIL1 [299, 318] [161, 180]  7  889 LLEKDPYALDVPNTAFGREH cTAGE5 20 2282 IEGRVLPMERINLKNTSFIT PIWIL2 [497, 516] [563, 582]  7  890 MSGDERSDEIVLTVSNSNVE CTCFL 20 2283 KDYSIVKELAKHTRLSPRRR PIWIL3 [206, 225] [413, 432]  7  891 FGKEMVKLNYVAARRQQELK CTNNA2 20 2284 ILKKLSMYQIGRNFYNPSEP PIWIL4 [179, 198] [213, 232]  7  892 GYVPQVDDIVNVVMVESIQF CXorf48 20 2285 PLQALLERASATLQDLVFDE PRAME [208, 227] [368, 387]  7  893 SMVENKLVELEHTLLSKGFR CXorf61 20 2286 DSVELAHYDVLLSYPNKTHP PSMA [85, 104] [106, 125]  7  894 VLGTVKWFNVRNGYGFINRN DBPC 20 2287 DERIAAHQALQHPYFQEQRK RAGE-1 [94, 113] [271, 290]  7  895 HKDWIFSIAWISDTMAVSGS DCAF12 20 2288 QPQPDNILSTASTGLINVAG SAGE1 [183, 202] [262, 281]  7  896 VAFWIIKLPRRRSHQDALEG DKKL1 20 2289 EYENESQASQAVMKMDGMTI SART3 [167, 186] [847, 866]  7  897 SSQYRMHSYYPPPSYLGQSV DMRT1 20 2290 PSSLTTPGSTLKFGAIRKMR SCP-1 [285, 304] [933, 952]  7  898 QQLGLSTNGKKIEVYLRLHR DPPA2 20 2291 EKLEEKHSQITELENLVQRM se57-1 [105, 124] [179, 198]  7  899 VDEKAPEFSMQGLKAGVIAV EpCAM 20 2292 KDERRKILQAFPDMHNSNIS SOX-6 [252, 271] [633, 652]  7  900 KETFNLYYAESDLDYGTNFQ EPHA2 20 2293 ETLEQYGKAYVDYKTVLQID SPAG1 [116, 135] [532, 551]  7  901 NLTWDQVITLDQVLDEVIPI FAM46D 20 2294 REAELKKEYNALHQRHTEMI SPAG9 [8, 27] [148, 167]  7  902 TRPKKMGSQLPKPRMLRESG FATE1 20 2295 IYYTDSQLFGNQTVVDNIIN SPO11 [73, 92] [136, 155]  7  903 RKWNQMMYSAELWRYRTITF FBXO39 20 2296 DGTKEIESQGSIPGFLISSG TAF7L [44, 63] [286, 305]  7  904 RSLFWRSEPADDLQRQDNRV FMR1NB 20 2297 DIGDTTIQLSWSRGFDNHSP TAG-1 [205, 224] [618, 637]  7  905 AIQKMKKLDKILAKKQRREK FSIP1 20 2298 VDVADKLVTFGLAKNITPQR TDRD1 [118, 137] [1109, 1128]  7  906 LSDDKMEHAQKLMRLQNLRG FTHL17 20 2299 LYHREKRIGIDLVHDNVEKN TEKT5 [59, 78] [194, 213]  7  907 MAASALRGLPVAGGGESSES GASZ 20 2300 SVSTPLSPGSVSSAASQYKD TEX14 [1, 20] [1209, 1228]  7  908 GLYHKMNGQNRPLIKPKRAL GATA-3 20 2301 HSNLLYSQYFTYFAGEPQAN TEX15 [289, 308] [2705, 2724]  7  909 VLLGLFSTIHDSIQYVQKNA Glypican-3 20 2302 YVTERIIAMSFPSSGRQSFY TPTE [319, 338] [241, 260]  7  910 SQKRSFVYVWKTWGQYWQVL gp100 20 2303 LAMKEKTISGMKNIIAEMEQ TSGA10 [144, 163] [291, 310]  7  911 PKASTWVVASRRSSTVSRAP HAGE 20 2304 EAYRRRHHNSSLNFFNWFSD TSPY1 [8, 27] [244, 263]  7  912 TKYHSDDYIKFLASIRPDNM HDAC1 20 2305 ASQSSMHNALHIYMNGTMSQ TYR [65, 84] [357, 376]  7  913 EMTKYHSDEYIKFLASIRPD HDAC2 20 2306 PGPALNVKLQPVETKAHFDS ZNF165 [64, 83] [155, 174]  7  914 SEELPYSEYFEYFAPDFTLH HDAC3 21 2307 VSLTYVSFRNLTHLESLHLE 5T4 [320, 339] [247, 266]  7  915 PSQKPSGFKSGQHPLNGQPL HOM-TES-85 21 2308 QSVEPQQDFAKYIEMHVIVE ADAM2 [92, 111] [168, 187]  7  916 IALILGAFFYWRSKNKEEEE IGFS11 21 2309 TKVNFTEIQKLVLDVAHVHE AFP [258, 277] [248, 267]  7  917 IREDDTTLVTATVENETYTL IL13RA2 21 2310 KGTGSAEAVLQNAYQAIHNE AKAP-3 [276, 295] [721, 740]  7  918 ESYNEWALNVNEALEAKINK JARID1B 21 2311 GMKQANGQFIDKLVESVMKL AKAP-4 [753, 772] [688, 707]  7  919 QDTDTKITISPLQELTLYNP KOC1 21 2312 KSYSPYDMLESIRKEVKGDL ANXA2 [304, 323] [233, 252]  7  920 VIDLMFHPGGLMKLRSREAD KU-CT-1 21 2313 AQALEKLFMQKLSQMPQEEQ BRDT [848, 867] [119, 138]  7  921 REGAGRMRVVGWGLGSASPE Lage-1 21 2314 QLKKELEKATASALDLLKRE CAGE1 [142, 161] [457, 476]  7  922 QSAYEIIKLKGYTSWAIGLS LDHC 21 2315 VGQLQAREQALTTMIKLKDK CCDC62 [236, 255] [149, 168]  7  923 LGFSPGPILPSTRKLYEKKL LEMD1 21 2316 IQESLKTKIVDSPEKLKNYK CDCA1 [19, 38] [236, 255]  7  924 DLFIPRIETILMMYTRNNLN LIPI 21 2317 KSLKSQVAEAKMTFKRFQAN CTAGE2 [56, 75] [151, 170]  7  925 VQAATSSSSPLVLGTLEEVP MAGE-A1 21 2318 ISHEKKAHDNWLAARNAERN cTAGE5 [28, 47] [454, 473]  7  926 KLLTQDWVQENYLEYRQVPG MAGE-A10 21 2319 SPQEMEVLQFHALEENVMVA CTCFL [269, 288]; [144, 163] MAGE-A4 [245, 264]  7  927 VKGLITKAEMLGSVIKNYED MAGE-A11 21 2320 TGIGELAAALNEFDNKIILD CTNNA2 [239, 258] [271, 290]  7  928 ETSFQVALSRKMAELVHFLL MAGE-A12 21 2321 VGTGQGSLLFYDIRAQRFLE DCAF12 [102, 121] [355, 374]  7  929 FAHPRKLLMQDLVQENYLEY MAGE-A2 21 2322 RLEGVISKYKPMMIITEYME EPHA2 [239, 258] [677, 696]  7  930 APEEKIWEELSVLEVFEGRE MAGE-A3 21 2323 NNRLKSLSIQYLELDRLVWR FBXO39 [216, 235]; [123, 142] MAGE-A6 [216, 235]  7  931 PVIFGKASESLKMIFGIDVK MAGE-A4 21 2324 EASKGYYLTKALTGHNMSEA FSIP1 [149, 168] [477, 496]  7  932 GGPRISYPLLHEWALREGEE MAGE-A6 21 2325 VSLVQELLDSGISVDSNFQY GASZ [295, 314] [59, 78]  7  933 LRKLLTQEWVQENYLEYRQA MAGE-A8 21 2326 TLSSRRRELIQKLKSFISFY Glypican- [245, 264] 3 [383, 402]  7  934 KLKVAELVHFLLAKYRVKEP MAGE-A9 21 2327 GVSRQLRTKAWNRQLYPEWT gp100 [109, 128] [34, 53]  7  935 EERAQVASSVRARRATTATT MAGE-B1 21 2328 PPIKKNFYKESTATSAMSKV HAGE [312, 331] [192, 211]  7  936 QRAPTTAAAAAAGVSSTKSK MAGE-B2 21 2329 WEEFADPFAFIHKIRPIAEQ JARID1B [63, 82] [39, 58]  7  937 IEKKQSFSQGLSSTVQSRTD MAGE-B3 21 2330 GKTVNELQNLSSAEVVVPRD KOC1 [90, 109] [507, 526]  7  938 NQSSAWTLPRNGLLMPLLSV MAGE-B4 21 2331 YSQTGYLSSSNIINDGFYDY KU-CT-1 [188, 207] [556, 575]  7  939 IYDGILHSIYGDARKIITED MAGE-B6 21 2332 LSVHIKNLLKHGASLDNFHF LIPI [316, 335] [157, 176]  7  940 SLLQIPMTSSFSSTLLSIFQ MAGE-C1 21 2333 AQALQAEEQEAAFFSSTLNV MAGE-A11 [336, 355] [138, 157]  7  941 MIVIKYKDYFPVILKRAREF MAGE-C2 21 2334 LKGNSATEEEIWKFMNVLGA MAGE-B1 [169, 188] [210, 229]  7  942 EEESLSEVVVPMPSWLIRTR MORC1 21 2335 LITKDLVQEKYLEYKQVPSS MAGE-B2 [135, 154] [247, 266]  7  943 QKFGDFLQHSPSILQSKAKK MPHOSPH1 21 2336 FPEILKKASFNMEVVFGVDL MAGE-B3 [1731, 1750] [149, 168]  7  944 TSASGSASGSASTLVHNGTS MUC-1 21 2337 DPPRYQFLWGPRAHAETSKM MAGE-B4 [959, 978] [264, 283]  7  945 PTPSKPLTSFLIQDILRDGA NKX3.1 21 2338 DELARFLLLKYQVKQPITKA MAGE-C1 [20, 39] [913, 932]  7  946 MMAWSDNKIFRDRFLYTFYF NLRP4 21 2339 PEEASDIIYFGRSKKRLSTL MORC1 [169, 188] [74, 93]  7  947 RLADELLFRQIAWIKKLPFF NR6A1 21 2340 DSDDTLYGSLTNSLNISEFE MPHOSPH1 [289, 308] [231, 250]  7  948 FPKLLRLDGRELSAPVIVDI NXF2 21 2341 MEKRPVQVLLSSLLRKKMLP NLRP4 [350, 369] [252, 271]  7  949 PKKPSAFKPAIEMQNSVPNK NY-BR-1 21 2342 KWHSEDEIRITTWANRKPPE NXF2 [461, 480] [90, 109]  7  950 PNDYTKFVAEYFQERQMLGT NYD-TSPG 21 2343 QIVEFLLIKNANANAVNKYK NY-BR-1 [185, 204] [130, 149]  7  951 KLVEAEMDGAAAAKQVMALK ODF2 21 2344 TEKFDLSNLQNNYAHLTNSS NYD-TSPG [210, 229] [282, 301]  7  952 MGPNTVGKASQPSFSIKGRS ODF3 21 2345 VAEALSTLESWRSRYNQVVK ODF2 [148, 167] [434, 453]  7  953 AFILLLVVAFSKKWLDLSRS ODF4 21 2346 RLWQELSDSLGPVVQVNTWS PASD1 [91, 110] [691, 710]  7  954 LKEKIVLTANRLKSLMKILS OIP5 21 2347 PKTMVNISDQTMHSIPTSPS PEPP2 [199, 218] [527, 546]  7  955 EQLEERTWLLHDAIQNQQNA PASD1 21 2348 YHDMTAGRRSIAGFVASINE PIWIL1 [382, 401] [634, 653]  7  956 NMARGLKYLHQEKKLLHGDI PBK 21 2349 KTPKDSFTMSDGKEITFLEY PIWIL2 [149, 168] [436, 455]  7  957 DLNLEWISLPRSWTYGITRG PEPP2 21 2350 LLQLWDLKFDTNFLSVPGRV PIWIL3 [4, 23] [452, 471]  7  958 YNPLMEARRLASALLFQHED PIWIL1 21 2351 ETQRGETIKMTITLKRELPS PIWIL4 [136, 155] [178, 197]  7  959 LVGNIVITRYNNRTYRIDDV PIWIL2 21 2352 MLTDVSPEPLQALLERASAT PRAME [413, 432] [360, 379]  7  960 GSEGTVVQLLANHFRVISRP PIWIL3 21 2353 TLRGAVEPDRYVILGGHRDS PSMA [119, 138] [361, 380]  7  961 QYAHKLTFLVAQSIHKEPSL PIWIL4 21 2354 LQSVLGSGTNGRVPVLRPLK RAGE-1 [824, 843] [368, 387]  7  962 ETFKAVLDGLDVLLAQEVRP PRAME 21 2355 RSTRDLYATVIHDIQEEEME SAGE1 [95, 114] [710, 729]  7  963 FEGRTRYSRITGGMEAEVGE PRSS55 21 2356 DGMTIKENIIKVAISNPPQR SART3 [59, 78] [862, 881]  7  964 KYADKIYSISMKHPQEMKTY PSMA 21 2357 DSSETTDLLSMVSEEETLKT SCP-1 [606, 625] [893, 912]  7  965 YDPDERIAAHQALQHPYFQE RAGE-1 21 2358 KLSLENKLLQLKSSATYGKS se57-1 [268, 287] [209, 228]  7  966 ISSTITRDLYVTATHSVHEE SAGE1 21 2359 NEKERTRFENLGPQLTGKSN SOX-6 [660, 679] [539, 558]  7  967 EKVHSLFRRQLAIPLYDMEA SART3 21 2360 PASVPLQAWHPAKEMISKQA SPAG1 [245, 264] [587, 606]  7  968 EQEQSSLRASLEIELSNLKA SCP-1 21 2361 SIRLDSTLRLYHAHTYQHLQ SPAG9 [739, 758] [1105, 1124]  7  969 NLLTGAQNEFKKEMAMLQKK SCP3a 21 2362 KGVPDLNTRLLVKKLWDTFH SPO11 [195, 214] [250, 269]  7  970 DQEQGRKLRSTMLELEKQGL SCRN1 21 2363 PDVKEMEKSSFTEYIESPDV TAF7L [361, 380] [242, 261]  7  971 ERKLSLENKLLQLKSSATYG se57-1 21 2364 VFSKFAQLNLAAEDTRLFAP TAG-1 [207, 226] [220, 239]  7  972 DRKKVIWFVASSFLIGLGSL SLCO6A1 21 2365 ESVLVGYVDYGNFEILSLMR TDRD1 [167, 186] [570, 589]  7  973 EDAEGSKAMNGSAAKLQQYY SOX-6 21 2366 IDDTLQTLKLRLRETQDTLQ TEKT5 [574, 593] [422, 441]  7  974 SIPFSNTHYRIPQGFGNLLE SP17 21 2367 PEHSEAFQASSDTLVAVEKS TEX14 [2, 21] [1042, 1061]  7  975 EPAGSEIADDLSILYSNRAA SPAG1 21 2368 NPETDVSLVPDASVLSKPIF TEX15 [476, 495] [2497, 2516]  7  976 DEEVVKELMPLVVAVLENLD SPAG9 21 2369 ILADLIFTDSKLYIPLEYRS TPTE [43, 62] [109, 128]  7  977 EMTEDIMRDRIEQVRRSISR SPATA19 21 2370 VANRDKEYQSQIALQEKESE TSGA10 [130, 149] [572, 591]  7  978 PTGGSRLASSSEVLASIENI SPO11 21 2371 SANDPIFLLHHAFVDSIFEQ TYR [35, 54] [380, 399]  7  979 EKRSKAFDDIATYFSKKEWK SSX-1 22 2372 NRNLTEVPTDLPAYVRNLFL 5T4 [19, 38] [79, 98]  7  980 MNGDDAFARRPTVGAQIPEK SSX-2 22 2373 LVLRPHDVAFLLVYREKSNY ADAM2 [1, 20] [258, 277]  7  981 MNGDDTFARRPTVGAQIPEK SSX-3 22 2374 FQKLGEYYLQNAFLVAYTKK AFP [1, 20] [419, 438]  7  982 VTLPPFMRSKRAADFHGNDF SSX-4 22 2375 SDSWAEDLIVSALLLIQYHL AKAP-3 [65, 84] [520, 539]  7  983 KYFSEKEWEKMKASEKIIYV SSX-5 22 2376 MVYANQVASDMMVSLMKTLK AKAP-4 [30, 49] [334, 353]  7  984 VHLKEILSKKQETLRILRLH SYCE1 22 2377 RIMVSRSEVDMLKIRSEFKR ANXA2 [96, 115] [290, 309]  7  985 NEGTSSIVMEIQKQIEKKEK TAF7L 22 2378 DVFETHFSKIPIEPVESMPL BRDT [384, 403] [367, 386]  7  986 VSREAILRFGFLQEFSKEER TAG-1 22 2379 QVFIDVINKLKENVEELIED CAGE1 [121, 140] [348, 367]  7  987 LGVTKEIAIWAERIMFSDLR TDRD1 22 2380 IYVKQQSDLQFLNFNVENSQ CCDC62 [237, 256] [288, 307]  7  988 TILPTLRSALFSRYSPHDWD TEKT5 22 2381 KMKDTVQKLKNARQEVVEKY CDCA1 [76, 95] [257, 276]  7  989 PPSLNYIPPVLQLSGGQKPD TEX14 22 2382 ILHEKKAHDNWSAAWTAERN CTAGE2 [796, 815] [423, 442]  7  990 YGLEHIFFDAAKNLVWKERT TEX15 22 2383 LTETELKFELLEKDPYALDV cTAGE5 [1882, 1901] [488, 507]  7  991 RPKRFYLEYYNNNRTTPVWP THEG 22 2384 KYASVEASKLKRHVRSHTGE CTCFL [199, 218] [348, 367]  7  992 IALFFLMDVLLRVFVERRQQ TPTE 22 2385 SNNEEGVKLVRMAATQIDSL CTNNA2 [133, 152] [439, 458]  7  993 RRQLDETNDELAQIARERDI TSGA10 22 2386 RHNVSRVPVYAHITHKALKD DCAF12 [330, 349] [223, 242]  7  994 KSEAPPIYLQVSSYQHWIWD TSP50 22 2387 QSPEDVYFSKSEQLKPLKTY EPHA2 [336, 355] [569, 588]  7  995 HHNSSLNFFNWFSDHNFAGS TSPY1 22 2388 QFKKTMSTFHNLVSLNLNYN FBXO39 [250, 269] [215, 234]  7  996 KHTISSDYVIPIGTYGQMKN TYR 22 2389 LREIDEKLKMMKENVLESTS FSIP1 [142, 161] [382, 401]  7  997 IQDVARVPGVAPTLVASASE WT1 22 2390 LITAVQNVITELPVNSQKIT GASZ [297, 316] [370, 389]  7  998 FKWNSDFINHQIIYAGEKNH ZNF165 22 2391 IHDSIQYVQKNAGKLTTTIG Glypican- [301, 320] 3 [327, 346]  8  999 LRHLDLSNNSLVSLTYVSFR 5T4 22 2392 SGYLAEADLSYTWDFGDSSG gp100 [236, 255] [248, 267]  8 1000 PWPERLSNNVEELLQSSLSL ACRBP 22 2393 DLASRGLDVHDVTHVYNFDF HAGE [167, 186] [545, 564]  8 1001 LYPGFTKRLFRELMGDHVSS ACTL8 22 2394 DQIAKYWELQGSTLKIPHVE JARID1B [303, 322] [105, 124]  8 1002 IFVSFNITIILSSLELWIDE ADAM2 22 2395 LQELTLYNPERTITVKGNVE KOC1 [215, 234] [315, 334]  8 1003 QKQSSYVGWWIHFRIVEIVV ADAM29 22 2396 FSWELHISELKFQLKSNVIP KU-CT-1 [185, 204] [767, 786]  8 1004 KLSQKFTKVNFTEIQKLVLD AFP 22 2397 KNKPFYKLQEVKILAQFYND LIPI [242, 261] [395, 414]  8 1005 DAMLRKLYNVMFAKKVPEHV AKAP-3 22 2398 SSVRARRATTATTFRARSRA MAGE-B1 [375, 394] [319, 338]  8 1006 MTDSDFVSAVKRNLFNQWKQ AKAP-4 22 2399 TTAAAAAAGVSSTKSKKGAK MAGE-B2 [398, 417] [67, 86]  8 1007 RYKSYSPYDMLESIRKEVKG ANXA2 22 2400 GRSRSALKKPQRALSTTTSV MAGE-B3 [231, 250] [56, 75]  8 1008 PSRQTAIIVNPPPPEYINTK BRDT 22 2401 EEERAGARPAVAARAGTTAM MAGE-B4 [4, 23] [311, 330]  8 1009 EVPAQLLDAEGAIKIGSEKS CABYR 22 2402 FPSSTSSSLSQSSPVSSFPS MAGE-C1 [397, 416] [817, 836]  8 1010 ADQRLAISHSQIAHLEERNK CAGE1 22 2403 VVPMPSWLIRTRESVTDDPQ MORC1 [715, 734] [143, 162]  8 1011 TQYDLSEFENIGAIGLELWQ CALR3 22 2404 QDVKGYSFIKDLQWIQVSDS MPHOSPH1 [287, 306] [304, 323]  8 1012 VEWMSIFKPSKMQRIVALKS CCDC62 22 2405 AAPITEIVSQPERLLFVIDS NLRP4 [532, 551] [213, 232]  8 1013 EKTKRLNELKLSVVSLKEIQ CDCA1 22 2406 NKLKPGQMEMLKLTMNKRYN NXF2 [218, 237] [207, 226]  8 1014 ALLARKQGAGDSLIAGSAMS CT45 22 2407 ASLTPLLLSITKRSEQIVEF NY-BR-1 [34, 53] [115, 134]  8 1015 ESPDLSISHSQVEQLVNKTS CT46 22 2408 NNYAHLTNSSINKSGASYEK NYD-TSPG [306, 325] [292, 311]  8 1016 LKEFEKTIHFYQKKIILHEK CTAGE2 22 2409 LKRLAEADSEKARLLLLLQD ODF2 [408, 427] [294, 313]  8 1017 TLEGERNQIYIQLSEVDKTK cTAGE5 22 2410 LVQQEQHLKEQQRQLREQLQ PASD1 [328, 347] [482, 501]  8 1018 TLQTVHFTSEAVELQDMSLL CTCFL 22 2411 SNSIKANPNAPVVRAGWLYK PEPP2 [81, 100] [159, 178]  8 1019 LVYDGVADIRKAVLMIRTPE CTNNA2 22 2412 MEARRLASALLFQHEDLIGK PIWIL1 [615, 634] [140, 159]  8 1020 QQGLPQGDTQLTTVQGVVTS CXorf48 22 2413 TIGQPTRLRSVAQKILLQIN PIWIL2 [26, 45] [703, 722]  8 1021 TDNNLAVYDLSRDILNNFPH CXorf61 22 2414 VGQSIHQEPNRSLSTRLFYL PIWIL3 [53, 72] [863, 882]  8 1022 VPPPRFAPAYARPFAPAPAQ DBPC 22 2415 GLTDQATSDFQLMKAVAEKT PIWIL4 [272, 291] [384, 403]  8 1023 ERGSGIRSVSFYEHIITVGT DCAF12 22 2416 NSHQDFWTVWSGNRASLYSF PRAME [338, 357] [127, 146]  8 1024 PRMEEKEALVPIQKATDSFH DKKL1 22 2417 SDIVPPFSAFSPQGMPEGDL PSMA [141, 160] [155, 174]  8 1025 ASEGRMVIQDIPAVTSRGHV DMRT1 22 2418 LMKEVRAFGQNYERIFILLE SAGE1 [178, 197] [831, 850]  8 1026 KIEVYLRLHRHAYPEQRQDM DPPA2 22 2419 FIQATDYVEIWQAYLDYLRR SART3 [115, 134] [411, 430]  8 1027 TVNGEQLDLDPGQTLIYYVD EpCAM 22 2420 LSRVYSKLYKEAEKIKKWKV SCP-1 [234, 253] [102, 121]  8 1028 DLEPHMNYTFTVEARNGVSG EPHA2 22 2421 ESTSAHIIEETEYVKKIRTT se57-1 [401, 420] [24, 43]  8 1029 AKLTKESYPVVVAESMYGDF FAM46D 22 2422 TQVKDEAAAQPLNLSSRPKT SOX-6 [192, 211] [414, 433]  8 1030 LQEYAGNFQGIRFHYDRNPG FATE1 22 2423 EDYKEKTVIDKSHLSKIETR SPAG1 [98, 117] [175, 194]  8 1031 QILDSLSYMRNENVISELNI PBX039 22 2424 QRHTEMIHNYMEHLERTKLH SPAG9 [181, 200] [161, 180]  8 1032 ESLKMRVSKPFGMLMLSIWI FMR1NB 22 2425 MIYKLVQSNTYATKRDIYYT SPO11 [59, 78] [120, 139]  8 1033 ILKQKSIIKLSSERKKEDIE FSIP1 22 2426 EYLERQLQAEFIESGQYRAN TAF7L [416, 435] [365, 384]  8 1034 HEQVKTIKELGGYVSNLRKI FTHL17 22 2427 QNRVEVLAGDLRFSKLSLED TAG-1 [140, 159] [370, 389]  8 1035 DENGYTALTWAARQGHKNIV GASZ 22 2428 MFSDLRSLQLKKTMEIKGTV TDRD1 [179, 198] [251, 270]  8 1036 KLESSHSRGSMTALGGASSS GATA-3 22 2429 ERRSQFPVLHMEVIVHLLLQ TEX14 [195, 214] [340, 359]  8 1037 YYPEDLFIDKKVLKVAHVEH Glypican- 22 2430 ELDHLALEWQITPSFESLSQ TEX15 3 [320, 339] [361, 380]  8 1038 SYTWDFGDSSGTLISRALVV gp100 22 2431 RLLRLIILLRIFHLFHQKRQ TPTE [257, 276] [195, 214]  8 1039 KALENFKTGKVRILIATDLA HAGE 22 2432 LAENKMAIQSRDVAQFRNVV TSGA10 [528, 547] [601, 620]  8 1040 QRLFENLRMLPHAPGVQMQA HDAC1 22 2433 RNTLEGFASPLTGIADASQS TYR [364, 383]; [341, 360] HDAC2 [365, 384]  8 1041 YGLYKKMIVFKPYQASQHDM HDAC3 23 2434 LAQLPSLRHLDLSNNSLVSL 5T4 [39, 58] [230, 249]  8 1042 NHHSERSRNHLERSLSQSDR HOM-TES-85 23 2435 VIEGKPYTVNLMQKNFLPHN ADAM2 [156, 175] [50, 69]  8 1043 RKPRPPHTHSYTISHATLER IGFS11 23 2436 YLQNAFLVAYTKKAPQLTSS AFP [394, 413] [426, 445]  8 1044 TNGSEVQSSWAETTYWISPQ IL13RA2 23 2437 ERPLASSPPRLYEDDETPGA AKAP-3 [114, 133] [630, 649]  8 1045 GEARLREMEALQSLRLANEG JARID1B 23 2438 LIMAKYSNDGAALAELEEQA AKAP-4 [1146, 1165] [709, 728]  8 1046 QVNTDSETAVVNVTYSSKDQ KOC1 23 2439 DTTTPATSAVKASSEFSPTF BRDT [112, 131] [216, 235]  8 1047 THEDKIVRRNATMIFGILAS KU-CT-1 23 2440 KFHWVEAFDDEMTEKPEFQS CAGE1 [77, 96] [126, 145]  8 1048 VLKDFTVSGNLLFMSVRDQD Lage-1 23 2441 STIEKQRKELQLLIGELKDR CCDC62 [122, 141] [21, 40]  8 1049 GETRLALVQRNVAIMKSIIP LDHC 23 2442 SNSGRLSGPAELRSFNMPSL cTAGE5 [103, 122] [629, 648]  8 1050 LDGAQDSDDSEELNIILQGN LEMD1 23 2443 ATIIARKSDLRVHMRNLHAY CTCFL [58, 77] [434, 453]  8 1051 DGSFSFKLLNQLGMIEEPRL LIPI 23 2444 FIDASRLVYDGVRDIRKAVL CTNNA2 [373, 392] [609, 628]  8 1052 APEEEIWEELSVMEVYDGRE MAGE-A1 23 2445 YGSEWSVYAVGSQAHVSFLD DCAF12 [209, 228] [304, 323]  8 1053 DPARYEFLWGPRAHAEIRKM MAGE-A10 23 2446 IEKVVQMTNDDIKRIGVRLP EPHA2 [290, 309] [933, 952]  8 1054 REDSGDFGLQVSTMFSEDDF MAGE-A11 23 2447 MYSAELWRYRTITFSGRPSR FBXO39 [23, 42] [50, 69]  8 1055 EEQETASSSSTLVEVTLREV MAGE-A12 23 2448 DVERNESLIKSGKKPFSNTE FSIP1 [34, 53] [223, 242]  8 1056 EEQQTASSSSTLVEVTLGEV MAGE-A2 23 2449 FTKNGITSKDQQKILAALKE GASZ [34, 53] [313, 332]  8 1057 SEFQAALSRKVAELVHFLLL MAGE-A3 23 2450 LGSDINVDDMVNELFDSLFP Glypican- [103, 122] 3 [157, 176]  8 1058 DGREHTVYGEPRKLLTQDWV MAGE-A4 23 2451 ANASFSIALNFPGSQKVLPD gp100 [233, 252] [80, 99]  8 1059 GSDPVRYEFLWGPRALAETS MAGE-A8 23 2452 QKPTPIQSQAWPIVLQGIDL HAGE [266, 285] [263, 282]  8 1060 ETSYEKVINYLVMLNAREPI MAGE-A9 23 2453 VPTELVEKEFWRLVSTIEED JARID1B [279, 298] [401, 420]  8 1061 PRAYAETTKMKVLEFLAKMN MAGE-B1 23 2454 IDVHRKENAGAAEKSITILS KOC1 [274, 293] [229, 248]  8 1062 KASEGLSVVFGLELNKVNPN MAGE-B2 23 2455 EENKTTLLELGAVEPLTKLL KU-CT-1 [155, 174] [57, 76]  8 1063 FWAKVNKTVPSAFQFWYEEA MAGE-B3 23 2456 GLDPAGPRFSRKPPYSRLDY LIPI [291, 310] [202, 221]  8 1064 DTTPNNFPLLYEEALRDEEE MAGE-B4 23 2457 FSQGLSSTVQSRTDPLIMKT MAGE-B3 [294, 313] [96, 115]  8 1065 PHLYEDALIDEVERALRLRA MAGE-B6 23 2458 VLRDTASSSLAFGIPQEPQR MAGE-B4 [388, 407] [45, 64]  8 1066 IESEPLFTYTLDEKVDELAR MAGE-C1 23 2459 RELLTKVWVQEHYLEYREVP MAGE-C1 [898, 917] [1041, 1060]  8 1067 KKKVLEFLAKLNNTVPSSFP MAGE-C2 23 2460 KISEDKLKNLRIKLALLLQK MORC1 [311, 330] [911, 930]  8 1068 EKQRELKTARTLSLFYGVNV MORC1 23 2461 KMKESDHQIIKRRLRTKTAK MPHOSPH1 [341, 360] [1801, 1820]  8 1069 KKIIETMSSSKLSNVEASKE MPHOSPH1 23 2462 QSTTSVYSSFVFNLFTPEGA NLRP4 [1749, 1768] [366, 385]  8 1070 AASRYNLTISDVSVSDVPFP MUC-1 23 2463 NVSQQALDLQNLRFDPDLMG NXF2  [1128, 1147] [226, 245]  8 1071 EAFSRASLVSVYNSYPYYPY NKX3.1 23 2464 NVDVSSTIYNNEVLHQPLSE NY-BR-1 [203, 222] [1180, 1199]  8 1072 KFKEHLKQMTLQLELKQIPW NLRP4 23 2465 FELFGFDILIDDNLKPWLLE NYD-TSPG [25, 44] [367, 386]  8 1073 LLSSTWQELILLSSLTVYSK NR6A1 23 2466 EKAQAKTASELSKSMESMRG ODF2  [319, 338] [328, 347]  8 1074 SETLKHLVLQFLQQYYSIYD NXF2 23 2467 VAFNQQQLVQQEQHLKEQQR PASD1 [385, 404] [475, 494]  8 1075 AQRKSKSLKINLNYAGDALR NY-BR-1 23 2468 RSMRDDTMWQLYEWQQRQFY PEPP2 [1200, 1219] [493, 512]  8 1076 LVKRKLVHDIIDLIYLNGLR NYD-TSPG 23 2469 ADGSEVSFLEYYRKQYNQEI PIWIL1 [402, 421] [335, 354]  8 1077 SMQNYVQFLKSSYANVFGDG ODF2 23 2470 RGPAQRESVGLVSMFRGLGI PIWIL2  [792, 811] [61, 80]  8 1078 SISARTKAFRVDSTPGPAAY ODF3 23 2471 RNEWYDFFIVSQSVQDGTVT PIWIL3 [123, 142] [792, 811]  8 1079 DLSRSLFYQRWPVDVSNRIH ODF4 23 2472 NPAAFVRAIQQYVDPDVQLV PIWIL4 [106, 125] [528, 547]  8 1080 SMEWDTQVVKGSSPLGPAGL OIP5 23 2473 SLFFLRGRLDQLLRHVMNPL PRAME [36, 55] [305, 324]  8 1081 SQGQRGHTSMKAVYVEPAAA PASD1 23 2474 KLGSGNDFEVFFQRLGIASG PSMA  [212, 231] [514, 533]  8 1082 MQKLGFGTGVNVYLMKRSPR PBK 23 2475 YKPDSNEFAVGTKNYSVSAG SAGE1 [35, 54] [777, 796]  8 1083 LHKEKYTLEQALLSASQEIE PEPP2 23 2476 LQQLEKYKPYEEALLQAEAP SART3 [659, 678] [289, 308]  8 1084 VGQSIHREPNLSLSNRLYYL PIWIL1 23 2477 TPEIYWKLDSKAVPSQTVSR SCP-1  [842, 861] [803, 822]  8 1085 HFWALFYPKRAMDQARELVN PIWIL2 23 2478 VDGKKLRIGEYKQLMRSRRQ SOX-6  [604, 623] [700, 719]  8 1086 SREIRELPLLNAMPLHSWLI PIWIL3 23 2479 LPTVVAYNNRAQAEIKLQNW SPAG1 [493, 512] [239, 258]  8 1087 QHKLSLWPGFAISVSYFERK PIWIL4 23 2480 LMELQEAVRWTEMIRASREN SPAG9 [237, 256] [522, 541]  8 1088 LQALYVDSLFFLRGRLDQLL PRAME 23 2481 LLPSDLKRLNVPKDSLIPLT SPO11 [298, 317] [313, 332]  8 1089 LTSPSMEIKEVASIILHKDF PRSS55 23 2482 LATSHMDFSTKSVFSKFAQL TAG-1 [129, 148] [208, 227]  8 1090 KRQIYVAAFTVQAAAETLSE PSMA 23 2483 YPRIISDVLIDEHLVLKSAS TDRD1 [729, 748] [880, 899]  8 1091 NILMLHEVVFDRKSGSLALI RAGE-1 23 2484 WNSQEFIQTLSDDFISVRER TEX14 [62, 81] [1245, 1264]  8 1092 SQPTPDNVLSAVTPELINLA SAGE1 23 2485 LSRKLDKAVVHLKKAHRRVH TEX15 [402, 421] [993, 1012]  8 1093 QVISVTFEKALNAGFIQATD SART3 23 2486 SVLDNITTDKILIDVFDGLP TPTE  [397, 416] [452, 471]  8 1094 KDKRDYLWTSAKNTLSTPLP SCP-1 23 2487 AVQELRRQNYSSNAYHMSST TSGA10 [833, 852] [644, 663]  8 1095 QEEKILNMFRQQQKILQQSR SCP3a 23 2488 SPLTGIADASQSSMHNALHI TYR  [146, 165] [349, 368]  8 1096 DRDEAWVLETIGKYWAAEKV SCRN1 24 2489 RHLDLSNNSLVSLTYVSFRN 5T4  [161, 180] [237, 256]  8 1097 KKIRTTLQKIRTQMFKDEIR se57-1 24 2490 IEPLESSVGFEHVIYQVKHK ADAM2 [38, 57] [127, 146]  8 1098 DISSGLVAIFIAFYGDRKKV SLCO6A1 24 2491 FQTKAATVTKELRESSLLNQ AFP  [152, 171] [202, 221]  8 1099 QEMRQFFTVGQQPQIPITTG SOX-6 24 2492 DDKSGDASRLTSAFPDSLYE AKAP-3 [719, 738] [697, 716]  8 1100 REILREQPDNIPAFAAAYFE SP17 24 2493 SDMMVSLMKTLKVHSSGKPI AKAP-4 [25, 44] [342, 361]  8 1101 YLSKAERFKMMLTLISKGQK SPAG1 24 2494 NYDEKRQLSLNINKLPGDKL BRDT  [875, 894] [511, 530]  8 1102 AQRKRFTRVEMARVLMERNQ SPAG9 24 2495 DQLGNEYFRQPPPRSPPLIH CAGE1 [498, 517] [176, 195]  8 1103 EVLEERTRIQFIRWSHTRIF SPATA19 24 2496 QTALQKTQLQLQEMAQKATH CCDC62 [106, 125] [104, 123]  8 1104 SSDYLSRVYLPNKLKFGGWI SPO11 24 2497 KSLKSQVAEAKMTFKIFQMN cTAGE5 [377, 396] [181, 200]  8 1105 SYVYMKRNYKAMTKLGFKVT SSX-1 24 2498 KKGRSKKAHVLAASVEQATQ CTNNA2 [47, 66] [50, 69]  8 1106 WEKMKASEKIFYVYMKRKYE SSX-2 24 2499 SRERGSGIRSVSFYEHIITV DCAF12 [37, 56] [336, 355]  8 1107 FGRLQGIFPKIMPKKPAEEG SSX-3 24 2500 LVLAGVGFFIHRRRKNQRAR EPHA2 [101, 120] [549, 568]  8 1108 EVMTKLGFKVTLPPFMRSKR SSX-4 24 2501 KLARQATNLKVNFFFERIMK FBXO39 [56, 75] [275, 294]  8 1109 RGKHAWTHRVRERKQLVIYE SSX-5 24 2502 LSAASPTISSFSPRLENRNN FSIP1 [159, 178] [330, 349]  8 1110 KERISALNLQIEEEKNKQRQ SYCE1 24 2503 KFKKAMTIGDVSLVQELLDS GASZ [134, 153] [49, 68]  8 1111 KQKNEKLISLQEQLQRFLKK TAF7L 24 2504 HQVRSFFQRLQPGLKWVPET Glypican- [443, 462] 3 [36, 55]  8 1112 QALAPDFRLNPVRRLIPAAR TAG-1 24 2505 PSGSWSQKRSFVYVWKTWGQ gp100 [413, 432] [139, 158]  8 1113 SEDDQWYRASVLAYASEESV TDRD1 24 2506 STDKVIVFVSRKAVADHLSS HAGE [553, 572] [486, 505]  8 1114 IMLLERSIMAKEGPLKVAQT TEKT5 24 2507 DMRRLIDLGVGLAPYSAVEK JARID1B [374, 393] [937, 956]  8 1115 KDRTMNLQDIRYILKNDLKD TEX14 24 2508 AIIGKQGQHIKQLSRFAGAS KOC1 [497, 516] [419, 438]  8 1116 ALKSRISWEGLLALDNGEME TEX15 24 2509 ILETKELNDLHIEALAVIAN KU-CT-1 [712, 731] [240, 259]  8 1117 KPKPHVSDHNRLLHLARPKA THEG 24 2510 AEPLFEQNNSLNVNFNTQKK LIPI [289, 308] [77, 96]  8 1118 DSKLYIPLEYRSISLAIALF TPTE 24 2511 DLVKLKYLEYRQVPNSNPAR MAGE-B3 [117, 136] [251, 270]  8 1119 DDERMEQMSNMTLMKETIST TSGA10 24 2512 NMLGIYDGKRHLIFGEPRKL MAGE-B4 [155, 174] [225, 244]  8 1120 RGQRPRTSAPSRAGALLLLL TSP50 24 2513 PGSPSFSSTLLSLFQSSPER MAGE-C1 [10, 29] [376, 395]  8 1121 ESEQAALGEEAVLLLDDIMA TSPY1 24 2514 RLSTLKFIGQYGNGLKSGSM MORC1 [53, 72] [89, 108]  8 1122 KSYLEQASRIWSWLLGAAMV TYR 24 2515 KSSGQMAQKFSFSKVFGPAT MPHOSPH1 [465, 484] [104, 123]  8 1123 LLLRTPYSSDNLYQMTSQLE WT1 24 2516 KQKFSRLWSSKSVTEIHLYF NLRP4 [215, 234] [104, 123]  8 1124 KIESQRIISGRISGYISEAS ZNF165 24 2517 NEWNYTRAGQAFTMLQTEGK NXF2 [201, 220] [597, 616]  9 1125 AYPEKMANRVLLELNSADLD 5T4 24 2518 KEILEAEIESHHPRLASAVQ NY-BR-1 [324, 343] [1132, 1151]  9 1126 DENSYWRNQNPGSLLQLPHT ACRBP 24 2519 LMAEDEPSGALLKPLVFRVD NYD-TSPG [303, 322] [73, 92]  9 1127 HPDTFSYPIERGRILNWEGV ACTL8 24 2520 DEMNKEIEAARRQFQSQLAD ODF2 [59, 78] [576, 595]  9 1128 DVAFLLVYREKSNYVGATFQ ADAM2 24 2521 DSVDLGAAGASAQPLQPSSP PASD1 [264, 283] [345, 364]  9 1129 LFGLEIWTNKNLIVVDDVRK ADAM29 24 2522 RRGWLYKQDSTGMKLWKKRW PEPP2 [245, 264] [172, 191]  9 1130 QLAVSVILRVAKGYQELLEK AFP 24 2523 WYDFFIVSQAVRSGSVSPTH PIWIL1 [364, 383] [774, 793]  9 1131 LMTDTQFVSAVKRTVFSHGS AKAP-3 24 2524 LLPELSFMTGIPEKMKKDFR PIWIL2 [348, 367] [493, 512]  9 1132 KEFADSISKGLMVYANQVAS AKAP-4 24 2525 ALLDHEAKKMSTYLKTISPN PIWIL3 [323, 342] [733, 752]  9 1133 EVDMLKIRSEFKRKYGKSLY ANXA2 24 2526 VAESSSNTSSRLSVIVVRKK PIWIL4 [297, 316] [715, 734]  9 1134 DEIEIDFETLKASTLRELEK BRDT 24 2527 LAKFSPYLGQMINLRRLLLS PRAME [550, 569] [249, 268]  9 1135 EYSDKTTQFPSVYAVPGTEQ CABYR 24 2528 NDQLMFLERAFIDPLGLPDR PSMA [114, 133] [665, 684]  9 1136 KNKSVSQYLEMDKTLSKKEE CAGE1 24 2529 MPAMSTRDQHATIIHNLREE SAGE1 [431, 450] [378, 397]  9 1137 NIGAIGLELWQVRSGTIFDN CALR3 24 2530 EEDEVKAARTRRKVLSRAVA SART3 [296, 315] [25, 44]  9 1138 LHNLRQIYVKQQSDLQFLNF CCDC62 24 2531 RVQAENSRLEMHFKLKEDYE SCP-1 [282, 301] [229, 248]  9 1139 KNDLYPNPKPEVLHMIYMRA CDCA1 24 2532 QQPHGVDGKLSSINNMGLNS SOX-6 [33, 52] [517, 536]  9 1140 MMQKPGSNAPVGGNVTSSFS CT45 24 2533 GTTKTFKIPIEHLDFKYIEK SPAG1 [84, 103] [13, 32]  9 1141 ISTEHQSLVLVKRLLAVSVS CT46 24 2534 EQKREQYRQVKAHVQKEDGR SPAG9 [20, 39] [623, 642]  9 1142 PPWEQDYRNMFPPPGQSYPD CTAGE2 24 2535 ARNEAPAFTIDNRSSWENIK SPO11 [566, 585] [63, 82]  9 1143 SVRSRLYVGREKKLALMLSG cTAGE5 24 2536 EPVQQDMNGILLGYEIRYWK TAG-1 [65, 84] [834, 853]  9 1144 DSKLAVSLAETTGLIKLEEE CTCFL 24 2537 LQKQVEKHEHILLFLLNNST TDRD1 [166, 185] [1147, 1166]  9 1145 NAVVLTVKASYVASTKYQKV CTNNA2 24 2538 LEAQLHEYVKQGNYVKVKKI TEX14 [874, 893] [23, 42]  9 1146 FIWRAISITPVHKSSSGFQD CXorf48 24 2539 LVELQMMMETIQFIENKKRH TEX15 [229, 248] [1690, 1709]  9 1147 LEHTLLSKGFRGASPHRKST CXorf61 24 2540 AARVSPISESVLARLSKFEV TPTE [94, 113] [49, 68]  9 1148 PQRPRNRPYFQRRRQQAPGP DBPC 24 2541 EIQGNVKVLKSERDKIFLLY TSGA10 [316, 335] [49, 68]  9 1149 VVDVQTSQITKIPILKDREP DCAF12 25 2542 FLLVYREKSNYVGATFQGKM ADAM2 [114, 133] [267, 286]  9 1150 LEGGHWLSEKRHRLQAIRDG DKKL1 25 2543 EKNIFLASFVHEYSRRHPQL AFP [184, 203] [346, 365]  9 1151 PPSYLGQSVPQFFTFEDAPS DMRT1 25 2544 FRGQERPDDFTASVSEGIMT AKAP-3 [296, 315] [268, 287]  9 1152 SRKRKAVTKRARLQRSYEMN DPPA2 25 2545 SQKMDMSNIVLMLIQKLLNE AKAP-4 [147, 166] [621, 640]  9 1153 DSKSLRTALQKEITTRYQLD EpCAM 25 2546 RRRREAMVGTIDMTLQSDIM BRDT [158, 177] [920, 939]  9 1154 RARRPKFADIVSILDKLIRA EPHA2 25 2547 LEKRVKELQMKITKQQVFID CAGE1 [858, 877] [333, 352]  9 1155 SRFFIDFPHIEEQQKKIESY FAM46D 25 2548 LHDELLFTVEREKRKDELLN CCDC62 [264, 283] [250, 269]  9 1156 LVIAEMMELGSRSRGASQKK FATE1 25 2549 SENGAYLDNPPKGALKKLIH cTAGE5 [32, 51] [299, 318]  9 1157 EDYFSHHLAVYNSPQFKKTM FBXO39 25 2550 LANRFKEFGKEMVKLNYVAA CTNNA2 [201, 220] [172, 191]  9 1158 EMENTKKFLSLTAVSEETVG FSIP1 25 2551 NKNKELGAVSLDGYFHLWKA DCAF12 [168, 187] [262, 281]  9 1159 DKMEHAQKLMRLQNLRGGHI FTHL17 25 2552 EKDGEFSVLQLVGMLRGIAA EPHA2 [62, 81] [706, 725]  9 1160 GHLITAVQNVITELPVNSQK GASZ 25 2553 ALRVFKARIYTNRYETNEED FBXO39 [368, 387] [395, 414]  9 1161 QGNHVPPYYGNSVRATVQRY GATA-3 25 2554 KELDSQLQDAIQKMKKLDKI FSIP1 [56, 75] [109, 128]  9 1162 KMEEKYQLTARLNMEQLLQS Glypican- 25 2555 QLLQSASMELKFLIIQNAAV Glypican- 3 3 [76, 95] [91, 110]  9 1163 MEVTVYHAAGSRSYVPLAHS gp100 25 2556 LADTNSLAVVSTQLIMPGQE gp100 [184, 203] [571, 590]  9 1164 LMPGFIHLVLQPSLKGQRNR HAGE 25 2557 PSLKGQRNRPGMLVLTPTRE HAGE [297, 316] [308, 327]  9 1165 PYNDYFEYFGPDFKLHISPS HDAC1 25 2558 LTESKETASAMATLGEARLR JARID1B [329, 348]; [1132, 1151] HDAC2 [330, 349]  9 1166 SPTNMQGFTKSLNAFNVGDD HDAC3 25 2559 RIRKLQIRNIPPHLQWEVLD KOC1 [74, 93] [79, 98]  9 1167 EVSESPGSIQVARGQPAVLP IGFS11 25 2560 DLRAVLLINSKSYVSPPSSM KU-CT-1 [24, 43] [597, 616]  9 1168 TVEYELKYRNIGSETWKTII IL13RA2 25 2561 KNLLKHGASLDNFHFIGVSL LIPI [66, 85] [162, 181]  9 1169 FKSDYFNMPVHMVPTELVEK JARID1B 25 2562 ALSTTTSVDVSYKKSYKGAN MAGE-B3 [389, 408] [68, 87]  9 1170 QFEQSETETVHLFIPALSVG KOC1 25 2563 VAARRGTTAMTSAYSRATSS MAGE-B4 [399, 418] [321, 340]  9 1171 AAYNKLLNNNLSLKYSQTGY KU-CT-1 25 2564 DVQSPLQNPASSFFSSALLS MAGE-C1 [542, 561] [123, 142]  9 1172 ITMPFSSPMEAELVRRILSR Lage-1 25 2565 EVKKAEEAVKIAESILKEAQ MORC1 [92, 111] [288, 307]  9 1173 WKNIHKQVIQSAYEIIKLKG LDHC 25 2566 YLAYDETLNVLKFSAIAQKV MPHOSPH1 [227, 246] [460, 479]  9 1174 AARAPSTRITYGTITKERDY LEMD1 25 2567 GLRKTDFDEETQALLTAEEE NLRP4 [118, 137] [956, 975]  9 1175 NFNTQKKTVWLIHGYRPVGS LIPI 25 2568 SLSALPKTQHDLSSILVDVW NXF2 [90, 109] [470, 489]  9 1176 SDPARYEFLWGPRALAETSY MAGE-A1 25 2569 VPNKAFELKNEQTLRADPMF NY-BR-1 [257, 276] [477, 496]  9 1177 GSDPRSFPLWYEEALKDEEE MAGE-A10 25 2570 DETTPAVVQSVLLERGWNKF NYD-TSPG [320, 339] [92, 111]  9 1178 LLTQNWVQEKYLVYRQVPGT MAGE-A11 25 2571 TVTKSHKRGMKGDTVNVRRS ODF2 [358, 377] [39, 58]  9 1179 AREPFTKAEMLGSVIRNFQD MAGE-A12 25 2572 GASAQPLQPSSPVAYDIISQ PASD1 [126, 145] [353, 372]  9 1180 APEEKIWEELSMLEVFEGRE MAGE-A2 25 2573 YTLEQALLSASQEIEMHADN PEPP2 [216, 235] [664, 683]  9 1181 KASSSLQLVFGIELMEVDPI MAGE-A3 25 2574 KSQGLQISAGFQELSLAERG PIWIL1 [153, 172] [61, 80]  9 1182 PRALAETSYVKVLEHVVRVN MAGE-A4 25 2575 NFYDPTSAMVLQQHRLQIWP PIWIL2 [276, 295]; [342, 361] MAGE-A8 [278, 297]  9 1183 RKVAKLVHFLLLKYRAREPV MAGE-A6 25 2576 NKLIGSIVLTKYNNKTYRVD PIWIL3 [111, 130] [316, 335]  9 1184 VAELVRFLLRKYQIKEPVTK MAGE-A8 25 2577 ILPSNQKTYYDSIKKYLSSD PIWIL4 [116, 135] [550, 569]  9 1185 NYKRYFPVIFGKASEFMQVI MAGE-A9 25 2578 DELFSYLIEKVKRKKNVLRL PRAME [141, 160] [189, 208]  9 1186 DHFTEILNGASRRLELVFGL MAGE-B1 25 2579 YDVLLSYPNKTHPNYISIIN PSMA [144, 163] [113, 132]  9 1187 TKGEMLKIVGKRFREHFPEI MAGE-B2 25 2580 AFINMAATGVSSMSTRDQYA SAGE1 [133, 152] [604, 623]  9 1188 ILKKASFNMEVVFGVDLKKV MAGE-B3 25 2581 YVEFKEEKSALQALEMDRKS SART3 [152, 171] [750, 769]  9 1189 EPTTKAEMLKIISKKYKEHF MAGE-B4 25 2582 SEEETLKTLYRNNNPPASHL SCP-1 [128, 147] [905, 924]  9 1190 EYKPYFPQILNRTSQHLVVA MAGE-B6 25 2583 KQIEQLYAAQLASMQVSPGA SOX-6 [228, 247] [364, 383]  9 1191 PVSSSFSYTLLSLFQSSPER MAGE-C1 25 2584 RKDKPAATAASFTAEEWEKI SPAG1 [446, 465] [76, 95]  9 1192 EEPVTEAEMLMIVIKYKDYF MAGE-C2 25 2585 ESLFEELSSAGSGLIGDVDE SPAG9 [159, 178] [380, 399]  9 1193 RAQLRLDFIHANSTTHSFLF MORC1 25 2586 IPLTKRDQMKLDSILRRPYV SPO11 [10, 29] [329, 348]  9 1194 EENIGILPRTLNVLFDSLQE MPHOSPH1 25 2587 SPPATYRWKMNGTEMKLEPG TAG-1 [166, 185] [66, 85]  9 1195 TDYYQELQRDISEMFLQIYK MUC-1 25 2588 RPAKSKKLNKLVENSLSISN TDRD1 [1063, 1082] [135, 154]  9 1196 HQKYLSAPERAHLAKNLKLT NKX3.1 25 2589 QLYNWAAPEVILQKAATVKS TEX14 [145, 164] [418, 437]  9 1197 SFFSDFGLMWYLEELKKEEF NLRP4 25 2590 ELQTYHDQLVELLEETKREK TEX15 [4, 23] [1758, 1777]  9 1198 SDEGMEVIERLIYLYHKFHQ NR6A1 25 2591 FHNRVVRIMIDDHNVPTLHQ TPTE [362, 381] [295, 314]  9 1199 PSLSQEQQEMVQAFSAQSGM NXF2 25 2592 KQKVQDTNLEVNKLKNILKS TSGA10 [566, 585] [386, 405]  9 1200 QLKVLIAENTMLTSKLKEKQ NY-BR-1 26 2593 RVSGSSQSPPNLKYKSTLKI AKAP-3 [1111, 1130] [201, 220]  9 1201 STQSQALGSLRTTTPAFTLN NYD-TSPG 26 2594 DEAVGKVARKQLLDWLLANL AKAP-4 [9, 28] [835, 854]  9 1202 KNYEGMIDNYKSQVMKTRLE ODF2 26 2595 LQLPDYYTIIKNPMDLNTIK BRDT [537, 556] [61, 80]  9 1203 TKYVFDSAPSHSISARTKAF ODF3 26 2596 NVEELIEDKYKIILEKNDTK CAGE1 [112, 131] [360, 379]  9 1204 STLMLFPINIWIFELERNVS ODF4 26 2597 DAPAFNEKASIVLPSQDDFS CCDC62 [157, 176] [610, 629]  9 1205 DQASFTTSMEWDTQVVKGSS OIP5 26 2598 RANRDYVFKQVQEAIAGISN CTNNA2 [29, 48] [237, 256]  9 1206 TSNSEAISSSSIPQFPITSD PASD1 26 2599 WVYRGEAERIFIELKFTVRD EPHA2 [658, 677] [85, 104]  9 1207 NDHYRSVYQKRLMDEAKILK PBK 26 2600 QRREKEIKKQGLEMRIKLWE FSIP1 [71, 90] [133, 152]  9 1208 RSVPAGLTLQSVSPQSLQGK PEPP2 26 2601 ELKFLIIQNAAVFQEAFEIV Glypican- [595, 614] 3 [99, 118]  9 1209 LQFYNIIFRRLLKIMNLQQI PIWIL1 26 2602 EKVPVSEVMGTTLAEMSTPE gp100 [209, 228] [377, 396]  9 1210 RTDGGLFLLADVSHKVIRND PIWIL2 26 2603 GRTGRAGRTGVSITTLTRND HAGE [369, 388] [576, 595]  9 1211 KKMSTYLKTISPNNFTLAFI PIWIL3 26 2604 NLNNMPVMEQSVLAHITADI JARID1B [740, 759] [460, 479]  9 1212 VAGSMGFNVDYPKIIKVQEN PIWIL4 26 2605 VNTDSETAVVNVTYSSKDQA KOC1 [509, 528] [113, 132]  9 1213 SISISALQSLLQHLIGLSNL PRAME 26 2606 KIPKEKLPDFSWELHISELK KU-CT-1 [417, 436] [758, 777]  9 1214 LYSEELFPEELSVVLGTNDL PRSS55 26 2607 ERMEGRPLRTTVFLDTSGTY LIPI [110, 129] [334, 353]  9 1215 RPFYRHVIYAPSSHNKYAGE P5MA 26 2608 RAGREHFAFGEPRELLTKVW MAGE-C1 [684, 703] [1029, 1048]  9 1216 VYSKQPYTEYISTRWYRAPE RAGE-1 26 2609 PLNSFQYQRAQAMGIPFIIQ MORC1 [152, 171] [466, 485]  9 1217 NVLSGLINMAGASIPAMSSR SAGE1 26 2610 VSLDSNSNSKILNVKRATIS MPHOSPH1 [459, 478] [502, 521]  9 1218 RTRRKVLSRAVAAATYKTMG SART3 26 2611 FVKQAVNLLQEANFHIIDNV NLRP4 [33, 52] [565, 584]  9 1219 GAIRKMREDRWAVIAKMDRK SCP-1 26 2612 VEMRDVHKDQQLRHTPYSIR NXF2 [946, 965] [65, 84]  9 1220 LQKKIMMETQQQEIASVRKS SCP3a 26 2613 ELEVKQQLEQALRIQDIELK NY-BR-1 [211, 230] [1006, 1025]  9 1221 EIEALLGMDLVALGLERGET SCRN1 26 2614 STDVLVKRKLVHDIIDLIYL NYD-TSPG [103, 122] [398, 417]  9 1222 EKEKRTLLERKLSLENKLLQ se57-1 26 2615 QLADLQQLPDILKITEAKLA ODF2 [199, 218] [592, 611]  9 1223 PGSTRIKARKRKQLHFFDSR SLCO6A1 26 2616 VAENISSLLGHLPAEIVGKK PASD1 [340, 359] [57, 76]  9 1224 EGSDQHVASHLPLHPIMHNK SOX-6 26 2617 TLRKTKKMMDLRTERPRSAV PEPP2 [31, 50] [868, 887]  9 1225 GKYSAAIALLEPAGSEIADD SPAG1 26 2618 NEYMPSRIIVYRDGVGDGQL PIWIL1 [466, 485] [690, 709]  9 1226 KTRDGGSVVGASVFYKDVAG SPAG9 26 2619 RTLGRGSSDASLLPLGRAAG PIWIL2 [699, 718] [142, 161]  9 1227 QDIHVTADVVKAHLSKSDLL SPATA19 26 2620 ERRIGGVFQDLVVNTRQDMK PIWIL3 [81, 100] [92, 111]  9 1228 ADSKMKAEIQALTFLSSDYL SPO11 26 2621 QLYQYHVTYIPDLASRRLRI PIWIL4 [362, 381] [122, 141]  9 1229 AFDDIATYFSKKEWKKMKYS SSX-1 26 2622 SRYISMSVWTSPRRLVELAG PRAME [24, 43] [12, 31]  9 1230 PNRGNQVERPQMTFGRLQGI SSX-2 26 2623 LQDFDKSNPIVLRMMNDQLM PSMA [88, 107] [650, 669]  9 1231 AQIPEKIQKAFDDIAKYFSK SSX-3 26 2624 GIPSMSTKDLYATVTQNVHE SAGE1 [15, 34] [518, 537]  9 1232 WEKMKSSEKIVYVYMKLNYE SSX-4 26 2625 NEQRMKAAEKEAALVQQEEE SART3 [37, 56] [577, 596]  9 1233 NGDDAFVRRPRVGSQIPEKM SSX-5 26 2626 KMKDLTFLLEESRDKVNQLE SCP-1 [2, 21] [281, 300]  9 1234 KIEDLMEMVQKLQKVGSLEP SYCE1 26 2627 SLYSFRNTSTSPHKPDEGSR SOX-6 [32, 51] [88, 107]  9 1235 KDKLKIDLLPDGRHAVVEVE TAF7L 26 2628 RSGQFAEAAGKYSAAIALLE SPAG1 [126, 145] [457, 476]  9 1236 TDGRHFVSQTTGNLYIARTN TAG-1 26 2629 LMPLVVAVLENLDSVFAQDQ SPAG9 [179, 198] [50, 69]  9 1237 TADELRMISSTFLNLPFQGI TDRD1 26 2630 SSSEVLASIENIIQDIITSL SPO11 [807, 826] [43, 62]  9 1238 LQVRGAEASRLWASRLTDDS TEKT5 26 2631 FAFGNPVPRIKWRKVDGSLS TAG-1 [100, 119] [262, 281]  9 1239 LVYERITIGTLFSVLHERAS TEX14 26 2632 NSGKLLDHVLIEMGYGLKPS TDRD1 [324, 343] [431, 450]  9 1240 KQRFRGMLWFDLSLLPELVQ TEX15 26 2633 KAVVSGNYLEADVRLPKPYY TEX14 [2085, 2104] [466, 485]  9 1241 PSTTMTKARKARRARALMEL THEG 26 2634 NIHTSLAIAQKLMELKLGKI TEX15 [112, 131] [351, 370]  9 1242 MDVLLAVFVERRQQYFSDLF TPTE 26 2635 IYSIPRYVRDLKIQIEMEKK TPTE [139, 158] [421, 440]  9 1243 DKKSENIASLGESLAMKEKT TSGA10 26 2636 RMEQMSNMTLMKETISTVEK TSGA10 [278, 297] [158, 177]  9 1244 IDQMTQTASDVPVLQVIMHS TSP50 27 2637 KDTTIATILLKKVLLKHAKE AKAP-3 [171, 190] [309, 328]  9 1245 TPESAPEELLAVQVELEPVN TSPY1 27 2638 MMAYSDTTMMSDDIDWLRSH AKAP-4 [104, 123] [1, 20]  9 1246 FLLHHAFVDSIFEQWLRAHR TYR 27 2639 GLHNYYDVVKNPMDLGTIKE BRDT [386, 405] [305, 324]  9 1247 ELVRHHNMHQRNMTKLQLAL WT1 27 2640 KKTLQNLEEVLANTQKHLQE CAGE1 [430, 449] [379, 398]  9 1248 GRAFSQSSNLSQHQRIHMRE ZNF165 27 2641 ITLSSIFTKDLVEKHNLPWS CCDC62 [462, 481] [393, 412] 10 1249 AFARRPPLAELAALNLSGSA 5T4 27 2642 STKYQKVYGTAAVNSPVVSW CTNNA2 [110, 129] [887, 906] 10 1250 LQNETYSALSPGKSEDVVLR ACRBP 27 2643 VMWEVMTYGERPYWELSNHE EPHA2 [510, 529] [806, 825] 10 1251 SNTYQLPDGSRVELTPMQRV ACTL8 27 2644 EGDQSGWVVPVKGYELAVTQ FSIP1 [235, 254] [297, 316] 10 1252 VILAQLLSLSMGITYDDINK ADAM2 27 2645 VIYTQLMNPGLPDSALDINE Glypican- [309, 328] 3 [177, 196] 10 1253 PFGGQKHIIHIKVKKLLFSK ADAM29 27 2646 PDGQVIWVNNTIINGSQVWG gp100 [57, 76] [98, 117] 10 1254 LQTMKQEFLINLVKQKPQIT AFP 27 2647 PEELVSMAERFKAHQQKREM HAGE [545, 564] [614, 633] 10 1255 YDSDSWAEDLIVSALLLIQY AKAP-3 27 2648 HVERKILDLFQLNKLVAEEG JARID1B [518, 537] [122, 141] 10 1256 DIMEAMLKRLVSALIGEEKE AKAP-4 27 2649 PKDVFDPLMIESKKAATVVL KU-CT-1 [421, 440] [13, 32] 10 1257 AQRQDIAFAYQRRTKKELAS ANXA2 27 2650 ATTFIYNRAVKNTRKVAVSL LIPI [66, 85] [138, 157] 10 1258 PNHHQLAFNYQELEHLQTVK BRDT 27 2651 SVLQIPVSAASSSTLVSIFQ MAGE-C1 [732, 751] [161, 180] 10 1259 PAQLAAQMLGKVSSIHSDQS CABYR 27 2652 GVNVENRSQAGMFIYSNNRL MORC1 [172, 191] [357, 376] 10 1260 SDEAKSIRDVPTLLGAKLDK CAGE1 27 2653 ILQIEDSEMSRVIRVSELSL MPHOSPH1 [674, 693] [359, 378] 10 1261 QDWEKHFLDASTSKQSDWNG CALR3 27 2654 LKKEEFRKFKEHLKQMTLQL NLRP4 [226, 245] [18, 37] 10 1262 TSKLQRLLAESRQMVTDLEL CCDC62 27 2655 LSDITEKAPKVKTLNLSKNK NXF2 [631, 650] [288, 307] 10 1263 MIVKKEKLATAQFKINKKHE CDCA1 27 2656 AFKPAIEMQNSVPNKAFELK NY-BR-1 [345, 364] [466, 485] 10 1264 AQLQRTPMSALVFPNKISTE CT46 27 2657 YNEDDSVVEKAVSVRPEAAP NYD-TSPG [4, 23] [465, 484] 10 1265 VAEAKMTFKRFQANEERLEI CTAGE2 27 2658 HELAETEHENTVLRHNIERM ODF2 [157, 176] [167, 186] 10 1266 MAATEISVLSEQFTKIKELE CTCFL 27 2659 DKVNPKSSQRKLNWIPSFPT PASD1 [1, 20] [10, 29] 10 1267 ADMADVMRLLSHLKIVEEAL CTNNA2 27 2660 EEETRGVISYQTLPRNMPSH PEPP2 [141, 160] [427, 446] 10 1268 VEEDKPHYGLRAIKVDVVPR CXorf48 27 2661 IDVEVTRPEWYDFFIVSQAV PIWIL1 [80, 99] [765, 784] 10 1269 SGLINSNTDNNLAVYDLSRD CXorf61 27 2662 AFDGSILYLPVKLQQVLELK PIWIL2 [46, 65] [273, 292] 10 1270 VPVKGSRYAPNRRKSRRFIP DBPC 27 2663 GSKITYIDYYRQQHKEIVTV PIWIL3 [166, 185] [352, 371] 10 1271 FHLWKAENTLSKLLSTKLPY DCAF12 27 2664 LKKKRNDNSEAQLAHLIPEL PIWIL4 [276, 295] [360, 379] 10 1272 KMTDNKTGEVLISENVVASI DKKL1 27 2665 PMQDIKMILKMVQLDSIEDL PRAME [108, 127] [219, 238] 10 1273 TYYSSFYQPSLFPYYNNLYN DMRT1 27 2666 FSTQKVKMHIHSTNEVTRIY PSMA [208, 227] [337, 356] 10 1274 VRTYWIIIELKHKAREKPYD EpCAM 27 2667 PPEELHAAAYVFTNDGQQMR SAGE1 [139, 158] [13, 32] 10 1275 PPQQSRVWKYEVTYRKKGDS EPHA2 27 2668 RQKMSEIFPLTEELWLEWLH SART3 [460, 479] [135, 154] 10 1276 EQQKKIESYLHNHFIGEGMT FAM46D 27 2669 ESKKKRKMAFEFDINSDSSE SCP-1 [275, 294] [877, 896] 10 1277 PNTKAEMEMSLAEELNHGRQ FATE1 27 2670 SKDWKEKMERLNTSELLGEI SOX-6 [6, 25] [158, 177] 10 1278 FERIMKYERLARILLQEIPI FBXO39 27 2671 HPFSMKPLLRRAMAYETLEQ SPAG1 [289, 308] [517, 536] 10 1279 PVKGYELAVTQHQQLAEIDI FSIP1 27 2672 NEQLITQYEREKALRKHAEE SPAG9 [306, 325] [82, 101] 10 1280 EAGLAEYLFDKLTLGGRVKE FTHL17 27 2673 AVPSNIQGIRNLVTDAKFVL SPO11 [163, 182] [202, 221] 10 1281 EKDHIFSSYTAFGDLEVFLH GASZ 27 2674 STGILSVRDATKITLAPSSA TAG-1 [265, 284] [499, 518] 10 1282 SSFNPAALSRHMSSLSHISP GATA-3 27 2675 KEILPNGHVKVHFVDYGNIE TDRD1 [390, 409] [785, 804] 10 1283 ARRDLKVFGNFPKLIMTQVS Glypican- 27 2676 PPPSQELLDDIELLKQQQGS TEX14 3 [1331, 1350] [201, 220] 10 1284 SLIYRRRLMKQDFSVPQLPH gp100 27 2677 ENQIDTAFLSSTSKYEKLEK TEX15 [613, 632] [1188, 1207] 10 1285 IKNIQSTTNTTIQIIQEQPE HAGE 27 2678 KQKARRIYPSDFAVEILFGE TPTE [90, 109] [520, 539] 10 1286 TYETAVALDTEIPNELPYND HDAC1 27 2679 QSQIALQEKESEIQLLKEHL TSGA10 [313, 332] [580, 599] 10 1287 LDQIRQTIFENLKMLNHAPS HDAC3 28 2680 VFSHGSQKATDIMDAMLRKL AKAP-3 [355, 374] [362, 381] 10 1288 LGQSFSFHSGNANIPSIYAN IGFS11 28 2681 NSSDDSEDERVKRLAKLQEQ BRDT [341, 360] [410, 429] 10 1289 VNGSSENKPIRSSYFTFQLQ IL13RA2 28 2682 NIENYSTNALIQPVDTISIS CAGE1 [214, 233] [97, 116] 10 1290 SIPVHLNSLPRLETLVAEVQ JARID1B 28 2683 ELNDMVAVHQQQLLSWEEDR CCDC62 [1048, 1067] [43, 62] 10 1291 EEVKLEAHIRVPSFAAGRVI KOC1 28 2684 NEFDNKIILDPMTFSEARFR CTNNA2 [484, 503] [281, 300] 10 1292 LQEPSDLRAVLLINSKSYVS KU-CT-1 28 2685 IVSILDKLIRAPDSLKTLAD EPHA2 [592, 611] [867, 886] 10 1293 EALFKKSAETLWNIQKDLIF LDHC 28 2686 GSRSSNASLEVLSTEPGSFK FSIP1 [313, 332] [23, 42] 10 1294 LQEVKILAQFYNDFVNISSI LIPI 28 2687 FTDVSLYILGSDINVDDMVN Glypican- [402, 421] 3 [149, 168] 10 1295 AREPVTKAEMLESVIKNYKH MAGE-A1 28 2688 RSYVPLAHSSSAFTITDQVP gp100 [119, 138] [195, 214] 10 1296 LVQFLLFKYQMKEPITKAEI MAGE-A10 28 2689 LLMEAQLLQVSLPEIQELYQ JARID1B [141, 160] [1349, 1368] 10 1297 TVRPADLTRVIMPLEQRSQH MAGE-A11 28 2690 PVIQLLALKTLGVIANDKES KU-CT-1 [100, 119] [205, 224] 10 1298 PRKLLTQDLVQENYLEYRQV MAGE-A12 28 2691 FSFKLLNQLGMIEEPRLYEK LIPI [242, 261] [376, 395] 10 1299 EEGPRMFPDLESEFQAAISR MAGE-A2 28 2692 QSPPEGENTHSPLQIVPSLP MAGE-C1 [92, 111] [518, 537] 10 1300 GSVVGNWQYFFPVIFSKASS MAGE-A3 28 2693 EGDLEQTDTYLEALLKEDNL MORC1 [137, 156] [937, 956] 10 1301 GSNPARYEFLWGPRALAETS MAGE-A4 28 2694 NMANSIKFSVWVSFFEIYNE MPHOSPH1 [264, 283] [262, 281] 10 1302 KASDSLQLVFGIELMEVDPI MAGE-A6 28 2695 HYEEQQAWNITLRIFQKMDR NLRP4 [153, 172] [62, 81] 10 1303 AEMLESVIKNYKRYFPVIFG MAGE-A9 28 2696 LLRRTKRDIVDSLSALPKTQ NXF2 [132, 151] [459, 478] 10 1304 LNGASRRLELVFGLDLKEDN MAGE-B1 28 2697 ANILIDSGADINLVDVYGNT NY-BR-1 [150, 169] [66, 85] 10 1305 NSATEEEIWEFLNMLGVYDG MAGE-B2 28 2698 TDINTLTRQKELLLQKLSTF ODF2 [216, 235] [244, 263] 10 1306 EPRKLITQDLVKLKYLEYRQ MAGE-B3 28 2699 TQLLQQLYTSKAVSDEAVLT PASD1 [243, 262] [178, 197] 10 1307 LNMLGIYDGKRHLIFGEPRK MAGE-B4 28 2700 KQDSTGMKLWKKRWFVLSDL PEPP2 [224, 243] [178, 197] 10 1308 ARKIITEDLVQDKYVVYRQV MAGE-B6 28 2701 LFLPKRLQQKVTEVFSKTRN PIWIL1 [328, 347] [168, 187] 10 1309 KQPITKAEMLTNVISRYTGY MAGE-C1 28 2702 HRPSERQDNHGMLLKGEILL PIWIL2 [926, 945] [474, 493] 10 1310 PHSSPPYYEFLWGPRAHSES MAGE-C2 28 2703 PMGITMKPAEMIEVDGDANS PIWIL3 [290, 309] [535, 554] 10 1311 LKSGSMRIGKDFILFTKKEE MORC1 28 2704 ASRRLRIALLYSHSELSNKA PIWIL4 [103, 122] [135, 154] 10 1312 QKWREERDQLVAALEIQLKA MPHOSPH1 28 2705 RLSEGDVMHLSQSPSVSQLS PRAME [1516, 1535] [333, 352] 10 1313 DNRPALGSTAPPVHNVTSAS MUC-1 28 2706 SGKIVIARYGKVFRGNKVKN PSMA [943, 962] [197, 216] 10 1314 AFSHTQVIELERKFSHQKYL NKX3.1 28 2707 RHSSSKRRKSMSSWLDKQED SAGE1 [130, 149] [55, 74] 10 1315 FKDPKRAMEAFNLVRESEQL NLRP4 28 2708 YVEIWQAYLDYLRRRVDFKQ SART3 [315, 334] [417, 436] 10 1316 PSPGSTLSSSRSVELNGFMA NR6A1 28 2709 AVPSQTVSRNFTSVDHGISK SCP-1 [190, 209] [814, 833] 10 1317 TMNKRYNVSQQALDLQNLRF NXF2 28 2710 IGGSLGRGSSLDILSSLNSP SOX-6 [220, 239] [468, 487] 10 1318 IEVHNKASLTPLLLSITKRS NY-BR-1 28 2711 NWREKLSPIPAVPASVPLQA SPAG1 [109, 128] [575, 594] 10 1319 SDFKDFIFDDMYIVQKYISN NYD-TSPG 28 2712 AATSPSTNGASPVMDKPPEM SPAG9 [226, 245] [855, 874] 10 1320 FKLENERLKASFAPMEDKLN ODF2 28 2713 RKEMEIMADSKMKAEIQALT SPO11 [504, 523] [355, 374] 10 1321 RTGKDLGPAYSILGRYQTKT ODF3 28 2714 LVSSSAWSSALGSQTTFGPV TAG-1 [78, 97] [19, 38] 10 1322 YFNHKSFWSLILSHPSGAVS ODF4 28 2715 YGNIEEVTADELRMISSTFL TDRD1 [201, 220] [800, 819] 10 1323 IVNASEMDIQNVPLSEKIAE OIP5 28 2716 RVQRYGLHPDVNVYLGLTSE TEX14 [179, 198] [530, 549] 10 1324 SIPQFPITSDSTISTLETPQ PASD1 28 2717 DSQSDLTLHSEIAYISKPGI TEX15 [668, 687] [1550, 1569] 10 1325 MDEAKILKSLHHPNIVGYRA PBK 28 2718 GVKTPSQKRYVAYFAQVKHL TPTE [83, 102] [384, 403] 10 1326 YNVTSDYAVHPMSPVGRTSR PEPP2 29 2719 VSALLLIQYHLAQGGRADAR AKAP-3 [128, 147] [529, 548] 10 1327 RDWGLSFDSNLLSFSGRILQ PIWIL1 29 2720 KPGDDIVLMAQALEKLFMQK BRDT [439, 458] [110, 129] 10 1328 RINLKNTSFITSQELNWVKE PIWIL2 29 2721 EERNKHLEDLIRKPREKARK CAGE1 [572, 591] [730, 749] 10 1329 DVSHKLLRIETAYDFIKRTS PIWIL3 29 2722 NHPKVDIKREKNQKSLFKDQ CCDC62 [283, 302] [337, 356] 10 1330 PGFAISVSYFERKLLFSADV PIWIL4 29 2723 DGVRDIRKAVLMIRTPEELE CTNNA2 [244, 263] [618, 637] 10 1331 KLPTLAKFSPYLGQMINLRR PRAME 29 2724 KEVPVAIKTLKAGYTEKQRV EPHA2 [245, 264] [639, 658] 10 1332 LVNYNLWIEKVTQLEGRPFN PRSS55 29 2725 VVMVDREKKRLVELLKDLDE FSIP1 [288, 307] [269, 288] 10 1333 LKKEGWRPRRTILFASWDAE PSMA 29 2726 YQLTARLNMEQLLQSASMEL Glypican- [405, 424] 3 [81, 100] 10 1334 YVMELPKLKLSGVVRLSSYS RAGE-1 29 2727 PSAAELQDLLDVSFEFDVEL JARID1B [345, 364] [885, 904] 10 1335 FGQNYERIFILLEEVQGSMK SAGE1 29 2728 LVRGEYGRAWNEVMLQNDSR KU-CT-1 [838, 857] [815, 834] 10 1336 EKALNAGFIQATDYVEIWQA SART3 29 2729 SLTDSESLIESEPLFTYTLD MAGE-C1 [404, 423] [890, 909] 10 1337 ESKQLNVYEIKVNKLELELE SCP-1 29 2730 MKRSSSLPSWKSLLNVPMED MORC1 [632, 651] [764, 783] 10 1338 GEVQNMLEGVGVDINKALLA SCP3a 29 2731 LKLGIKHQSVAFTKLNNASS MPHOSPH1 [68, 87] [330, 349] 10 1339 FTGTPDPSRSIFKPFIFVDD SCRN1 29 2732 DLRRNGVVDADIPALLGTKI NLRP4 [294, 313] [418, 437] 10 1340 YESTSAHIIEETEYVKKIRT se57-1 29 2733 PPEKPSAFEPAIEMQKSVPN NY-BR-1 [23, 42] [698, 717] 10 1341 RKRKQLHFFDSRLKDLKLGT SLCO6A1 29 2734 EQLHVQLADKDLYVAEALST ODF2 [348, 367] [421, 440] 10 1342 TGGATVAEARVYRDARGRAS SOX-6 29 2735 VEQYGPQENVHMFVDSDSTY PASD1 [597, 616] [247, 266] 10 1343 IAKPNNAYEFGQIINALSTR SPAG1 29 2736 DRPLTKINSVKLNSLPSEYE PEPP2 [800, 819] [335, 354] 10 1344 GYRNKIYVVQPKAMKIEKSF SPAG9 29 2737 GVGDGQLKTLVNYEVPQFLD PIWIL1 [1063, 1082] [703, 722] 10 1345 DIMRDRIEQVARSISRLTDV SPATA19 29 2738 SINLTLTKWYSRVVFQMPHQ PIWIL2 [134, 153] [763, 782] 10 1346 DVLDRHRESLLAALRRGGRE SPO11 29 2739 LAFIVVKKRINTRFFLKHGS PIWIL3 [14, 33] [756, 775] 10 1347 DNDHNRRIQVEHPQMTFGRL SSX-1 29 2740 ASSSNGFLGTSRISTNDKYG PIWIL4 [85, 104] [40, 59] 10 1348 PNRGNQVQRPQMTFGRLQGI SSX-3 29 2741 SLSGVMLTDVSPEPLQALLE PRAME [88, 107] [355, 374] 10 1349 HRLRERKQLVVYEEISDPEE SSX-4 29 2742 MPEGDLVYVNYARTEDFFKL PSMA [166, 185] [169, 188] 10 1350 QIPEKMQKAFDDIAKYFSEK SSX-5 29 2743 TNDGQQMRSDEVNLVATGHQ SAGE1 [16, 35] [25, 44] 10 1351 LQIEEEKNKQRQLRLAFEEQ SYCE1 29 2744 AHGTVKDLRLVTNRAGKPKG SART3 [142, 161] [823, 842] 10 1352 GSIPGFLISSGMSSHKQGHT TAF7L 29 2745 ESNKARAAHSFVVTEFETTV SCP-1 [295, 314] [365, 384] 10 1353 GLSYRWLLNEFPNFIPTDGR TAG-1 29 2746 LNSPALFGDQDTVMKAIQEA SOX-6 [163, 182] [484, 503] 10 1354 IISDVLIDEHLVLKSASPHK TDRD1 29 2747 LAITAPKDLPMFLSNKLEGD SPAG1 [883, 902] [829, 848] 10 1355 FQAENTIMLLERSIMAKEGP TEKT5 29 2748 MSERVSGLAGSIYREFERLI SPAG9 [368, 387] [20, 39] 10 1356 WKRLGWSESSRIIVLDQSDL TEX14 29 2749 SGPSSKIRTREAAPSVAPSG TAG-1 [1476, 1495] [697, 716] 10 1357 TKREKNSYYVFLKYKRQVNE TEX15 29 2750 EIIPLNRIYHLNRNIDLFPP TDRD1 [1773, 1792] [355, 374] 10 1358 RSSLEYRASSRLKELAAPKI THEG 29 2751 DIPWKGLDGSVVKKAVVSGN TEX14 [221, 240] [453, 472] 10 1359 QKRYVAYFAQVKHLYNWNLP TPTE 29 2752 TPKKVEMQRSLPGSLLPLEN TEX15 [390, 409] [2384, 2403] 10 1360 ENELDSAHSEIELLRSQMAN TSGA10 29 2753 HLFHQKRQLEKLIRRRVSEN TPTE [540, 559] [207, 226] 10 1361 DIGLLKLKQELKYSNYVRPI TSP50 30 2754 SFYANRLTNLVIAMARKEIN AKAP-3 [206, 225] [125, 144] 10 1362 SNPYFQNKVITKEYLVNITE TSPY1 30 2755 SVFPKTSISPLNVVQGASVN BRDT [207, 226] [179, 198] 10 1363 PAFLPWHRLFLLRWEQEIQK TYR 30 2756 LSKKEEEVERLQQLKKELEK CAGE1 [205, 224] [445, 464] 10 1364 AQYRIHTHGVFRGIQDVRRV WT1 30 2757 QAFLRHPDVAATRANRDYVF CTNNA2 [284, 303] [225, 244] 10 1365 EHGQEIFQKKVSPPGPALNV ZNF165 30 2758 LDDLAPDTTYLVQVQALTQE EPHA2 [142, 161] [494, 513] 11 1366 DERQNRSFEGMVVAALLAGR 5T4 30 2759 LEMRIKLWEEIKSAKYSEAW FSIP1 [188, 207] [144, 163] 11 1367 TPTAKAWKYMEEEILGFGKS ACRBP 30 2760 NNYPSLTPQAFEFVGEFFTD Glypican- [340, 359] 3 [132, 151] 11 1368 WEGSNRNFSVWLGASVVAHL ACTL8 30 2761 PDDWDNRTSYLHSPFSTGRS JARID1B [328, 347] [1316, 1335] 11 1369 VLIAIMVKVNFQRKKWRTED ADAM2 30 2762 ISELKFQLKSNVIPIGHVKK KU-CT-1 [701, 720] [773, 792] 11 1370 ERNDSKLLEDLYVIVNIVDS ADAM29 30 2763 ERTQSTFEGFAQSPLQIPVS MAGE-C1 [215, 234] [219, 238] 11 1371 QITEEQLEAVIADFSGLLEK AFP 30 2764 LPSIPLGTMSTISPSKNEKE MORC1 [562, 581] [529, 548] 11 1372 IDGHMSGQMVEHLMNSVMKL AKAP-3 30 2765 NASSRSHSIFTVKILQIEDS MPHOSPH1 [661, 680] [346, 365] 11 1373 QVASDMMVSLMKTLKVHSSG AKAP-4 30 2766 FFKDPKRAMEAFNLVRESEQ NLRP4 [339, 358] [314, 333] 11 1374 KELASALKSALSGHLETVIL ANXA2 30 2767 VIEVHNKASLTPLLLSITKR NY-BR-1 [81, 100] [108, 127] 11 1375 ELEHLQTVKNISPLQILPPS BRDT 30 2768 APMEDKLNQAHLEVQQLKAS ODF2 [743, 762] [516, 535] 11 1376 AQLEENAKYSSVYMEAEATA CABYR 30 2769 LELMMDHLQKQPNTLRHVVI PASD1 [366, 385] [402, 421] 11 1377 SGEMLKFTEKSLAKSIAKES CAGE1 30 2770 PAQTVHYRPINLSSSENKIV PEPP2 [197, 216] [360, 379] 11 1378 GTIFDNFLITDDEEYADNFG CALR3 30 2771 FRLTSRPQWALYQYHIDYNP PIWIL1 [310, 329] [119, 138] 11 1379 NFNVENSQELIQMYDSKMEE CCDC62 30 2772 LVSMFRGLGIETVSKTPLKR PIWIL2 [300, 319] [71, 90] 11 1380 NYKEKMKDTVQKLKNARQEV CDCA1 30 2773 LLNAMPLHSWLILYSRSSHR PIWIL3 [253, 272] [501, 520] 11 1381 TERERMENIDSTILSPKQIK CT46 30 2774 EKQLIGLIVLTRYNNRTYSI PIWIL4 [228, 247] [294, 313] 11 1382 HSEQNELMADISKRIQSLED CTAGE2 30 2775 KYAGESFPGIYDALFDIESK PSMA [129, 148] [699, 718] 11 1383 EELERTIHSYQGQIISHEKK cTAGE5 30 2776 INDDIKYQLMKEVRRFGQNY SAGE1 [440, 459] [823, 842] 11 1384 EESEKYILTLQTVHFTSEAV CTCFL 30 2777 HVDLIRLLRLEGELTKVRMA SART3 [73, 92] [115, 134] 11 1385 SLEERLESIISGAALMADSS CTNNA2 30 2778 GSTLKFGAIRKMREDRWAVI SCP-1 [302, 321] [940, 959] 11 1386 SIYFSSDVVTGNVPLKVGQK CXorf48 30 2779 GATVAEARVYRDARGRASSE SOX-6 [56, 75] [599, 618] 11 1387 ALIVFWKYRRFQRNTGEMSS CXorf61 30 2780 GLQLANDSVNRLSRILMELD SPAG1 [14, 33] [553, 572] 11 1388 NPATAVSGTPAPPARSQADK DBPC 30 2781 ILENTQLLETKNALNIVKND SPAG9 [68, 87] [414, 433] 11 1389 ETWRNYFSDIDFFPNAVYTH DCAF12 30 2782 EYQNGDGFGYLLSFRRQGST TAG-1 [405, 424] [737, 756] 11 1390 EVLISENVVASIQPAEGSFE DKKL1 30 2783 SIKIVDILEEEVVTFAVEVE TDRD1 [116, 135] [409, 428] 11 1391 PQYSMALAADSASGEVGNPL DMRT1 30 2784 SSTAQENLALETSSPIEEDF TEX14 [229, 248] [1093, 1112] 11 1392 HKAREKPYDSKSLRTALQKE EpCAM 30 2785 SYGENIVELSSSDSSLLLKD TEX15 [150, 169] [1421, 1440] 11 1393 MAAGYTAIEKVVQMTNDDIK EPHA2 30 2786 VFDGLPLYDDVKVQFFYSNL TPTE [926, 945] [466, 485]

TABLE 25B Hotspot Sequences and corresponding TAA Source Source Antigen(s) Antigen(s) SEQ [AA posi- SEQ [AA posi- Cy- ID tion in Cy- ID tion in cle NO Sequence Antigen] cle NO Sequence Antigen] 28 5432 SVYADQVNIDYLMNRPQNLR AKAP4  11 5682 SQVAGRLIIRAEELAQMWKV Ropporin-1A [157, 176] [77-96] 24 5433 FTSSAMSSFNRHMKTHTSEK CTCFL 11 5683 YPEEIVRYYSPGYSDTLLQR SPAG6 [264, 283] [481-500] 31 5434 KQQVFIDVINKLKENVEELI CAGE1 11 5684 ESTEGSRSRSRSLDIQPSSE SPAG8 [346, 365] [5-24] 10 5435 KKIEVYLRLHRHAYPEQRQD DPPA2 11 5685 KSLPNENFQSLYNKELPVHI TDRD4 [114, 133] [903-922] 15 5436 GSKLGRRAKPEGALQNNDGL EpCAM 11 5686 FQQQQHQILATPLQNLQVLA TTK [75, 94] [491-510] 31 5437 SDTKDYFMSKTLGIGALKAP FSIP1 11 5687 ASAAARGFPLRTLNDWFSSM WBP2NL [516, 535] [133-152] 16 5438 KLHNINRPLTMKKEGIQTRN GATA-3 11 5688 RTYLSQKSLQAHIKRAHKRA ZNF645 [347, 366] [122-141] 20 5439 SVMDLVGSILKNLARVHPVS LDHC 12 5689 KWVGESERQLRLLFDQAYQM ATAD2 [255, 274] [504-523] 22 5440 QEESFSPTAMDAIFGSLSDE MAGE-A11 12 5690 KVFTHQGKVALYGKLVQSAQ CASC5 [176, 195] [2009-2028] 14 5441 EDSVFAHPRKLLMQDLVQEN MAGE-A2 12 5691 KQHREEDEVDSVLLSASKIL CCDC110 [235, 254] [5-24] 18 5442 REALDEKVAELVRFLLRKYQ MAGE-A8 12 5692 ATYLWWVNNQSLPVSPRLQL CEA [109, 128] [174-193] 31 5443 LQRPVSSFFSYTLASLLQSS MAGE-C1 12 5693 LLKQQEEQTRVALLEQQMQA CEP55 [775, 794] [339-358] 31 5444 ESLVEKTPDEAASLVEGTSD NY-BR-1 12 5694 SDLDFPTQVIPLKTLNAVAS EZH2 [262, 281] [87-106] 28 5445 DWNLYWRTSSFAMTEHNSVK NYD-TSPG 12 5695 SYGERHLDDLSLKILREDKK HORMAD2 [120, 139] [57-76]  3 5446 SARVASRSAGRGDGQEAPDV PAGE4 12 5696 LRDAVVIEQSSSLNEASSGL hTERT [2, 21] [786-805] 31 5447 YLTGLTDKMRNDFNVMKDLA PIWIL1 12 5697 PPMQLGFPSLHSFIKEHSLQ KIF20A [388, 407] [511-530] 31 5448 ENPAMQEKKRSSIWQFFSRL SPAG9 12 5698 SLQARLFPGLAIKIQRSNGL MCAK [540, 559] [6-25] 32 5449 NEQDLVREEAQKMSSLLPTM SPAG9 12 5699 TRFFSRITKANVDLLPRGAP MSLN [953, 972] [138-157] 18 5450 GFSYEQDPTLADPEAVARAW TSP50 12 5700 MWKVVNLPTDLFNSVMNVGR Ropporin-1A [105, 124] [93-112]  1 5451 RQLRLLFDQAYQMRPSIIFF ATAD2 12 5701 AVTNTLPVLLSLYMSTESSE SPAG6 [511-530] [375-394]  1 5452 GVVFLALSAQLLQARLMKEE BAGE-3 12 5702 YWPLRGKREAMLEMLLQHQI SPAG8 [4-23] [342-361]  1 5453 RLLFSSSAAFAKFEITLFLS CASC5 12 5703 KFEDGIWYRAKVIGLPGHQE TDRD4 [2266-2285] [736-755]  1 5454 QQLESFQALRMQTLQNVSMV CCDC110 12 5704 EDLSGRELTIDSIMNKVRDI TTK [61-80] [4-23]  1 5455 AQNTTYLWWVNGQSLPVSPR CEA 12 5705 NEGPPAGYRASPAGSGARPQ WBP2NL [527-546] [266-285]  1 5456 KKRSEELLSQVQFLYTSLLK CEP55 12 5706 RDHLSYIPPEQHTMVSLPSV ZNF645 322-341] [174-193]  1 5457 HPLLGVSATLNSVLNSNAIK DKK1 13 5707 VLRMTRARRSQVEQQQLITV ATAD2 [24-43] [1293-1312]  1 5458 TGEELFFDYRYSQADALKYV EZH2 13 5708 TIREFFILLQVHILIQKPRQ CASC5 [718-737] [1895-1914]  1 5459 MSWAGASTYRPRPARYVEPP GAGE-2 13 5709 AKIQYLQNYLKESVQIQKKV CCDC110 [1-20] [426-445]  1 5460 EKRYLRMAVLTLYTDPMGSE HORMAD2 13 5710 TPIISPPDSSYLSGANLNLS CEA [95-114] [595-614]  1 5461 AEANAVATMPVALLADSPAA HSPB9 13 5711 KLDRQHVQHQLHVILKELRK CEP55 [24-43] [367-386]  1 5462 SFFYVTETTFQKNALFFYRK hTERT 13 5712 KVMMVNGDHRIGIFAKRAIQ EZH2 [559-578] [698-717]  1 5463 ANIRFSIWISFFEIYNELLY KIF20A 13 5713 GFHSMKVKVMTEATKVIDLE HORMAD2 [295-314] [226-245]  1 5464 KAQNASKGIYAMASRDVFLL MCAK 13 5714 DTDPRALVQLLAQHSSPWQV hTERT [365-384] [442-461]  1 5465 SQQNVSMDLATFMKLRTDAV MSLN 13 5715 VGQASFFNLTVKEMVKDVLK KIF20A [520-539] [131-150]  1 5466 DEERELEKLFQLGPPSPVKM PTTG-1 13 5716 FQIILRAKGRMHGKFSLVDL MCAK [150-169] [474-493]  1 5467 STFQFLYTYIAKVDGEISAS Ropporin-1A 13 5717 DVLYPKARLAFQNMNGSEYF MSLN [159-178] [482-501]  1 5468 QNIETLQNAGVMSLLRTLLL SPAG6 13 5718 EDFDPGVKEAAAWALRYIAR SPAG6 [32-51] [135-154]  1 5469 FRHGHAGLLTMQLKSPMPSS SPAG8 13 5719 ATAVNTRQRYYPMAGYIKED TDRD4 [309-328] [77-96]  1 5470 KMKSLEKISYVYMKRKYEAM SSX-7 13 5720 VSDEKSSELIITDSITLKNK TTK [39-58] [340-359]  1 5471 GERVDVSKYLIKKGLALRER TDRD4 13 5721 PQRSEGSNVFSGRKTGTLFL WBP2NL [1087-1106] [34-53]  1 5472 KKFAFVHISFAQFELSQGNV TTK 13 5722 IKRAHKRARKQVTSASLEKV ZNF645 [140-159] [134-153]  1 5473 PKPEEKRFLLEEPMPFFYLK URLC10 14 5723 ASLADVDPMQLDSSVRFDSV ATAD2 [95-114] [409-428]  1 5474 RTLNDWFSSMGIYVITGEGN WBP2NL 14 5724 EITGMNTLLSAPIHTQMQQK CASC5 [143-162] [131-150]  1 5475 IPPEQHTMVSLPSVQHMLQE ZNF645 14 5725 KDKERQPFLVKQGSIISENE CCDC110 [180-199] [393-412]  2 5476 SRQDQIHSSIVSTLLALMDG ATAD2 14 5726 ERVDGNRQIIGYVIGTQQAT CEA [542-561] [71-90]  2 5477 TALDVHFVSTLEPLSNAVKR BAGE-3 14 5727 EKVAASPKSPTAALNESLVE CEP55 [37-56] [420-439]  2 5478 WEQSLFSTTKPLFSSGQFSM CASC5 14 5728 EWSGAEASMFRVLIGTYYDN EZH2 [717-736] [431-450]  2 5479 LKFHSRVPRYTLSFLDQTKH CCDC110 14 5729 VKVMTEATKVIDLENNLFRE HORMAD2 [371-390] [232-251]  2 5480 AQYSWFVNGTFQQSTQELFI CEA 14 5730 EHRLREEILAKFLHWLMSVY hTERT [267-286] [533-552]  2 5481 LTDKERHALLEKIRVLEAEK CEP55 14 5731 ERGIGQATHRFTFSQIFGPE KIF20A [51-70] [111-130]  2 5482 STLDGYSRRTTLSSKMYHTK DKK1 14 5732 EYTLNTLRYADRVKELSPHS MCAK [163-182] [573-592]  2 5483 PRKFPSDKIFEAISSMFPDK EZH2 14 5733 EDIRKWNVTSLETLKALLEV MSLN [215-234] [382-401]  2 5484 KEPINVQVGFVSTGFHSMKV HORMAD2 14 5734 AWALRYIARHNAELSQAVVD SPAG6 [213-232] [146-165]  2 5485 EELVVQVDGQWLMVTGQQQL HSPB9 14 5735 LERSASTDKTLLNSSAVMLD TDRD4 [66-85] [125-144]  2 5486 QQVWKNPTFFLRVISDTASL hTERT 14 5736 ELRNLKSVQNSHFKEPLVSD TTK [1023-1042] [323-342]  2 5487 DSMEKVKVYLAVAPLLPSEL KIF20A 14 5737 ESTAAQAPENEASLPSASSS WBP2NL [60-79] [286-305]  2 5488 ETASNEVVYRFTARPLVQTI MCAK 14 5738 PIQWETVSIFTRKHGNLTVD ZNF645 [317-336] [222-241]  2 5489 DLPGRFVAESAEVLLPRLVS MSLN 15 5739 YQMRPSIIFFDEIDGLAPVR ATAD2 [191-210] [521-540]  2 5490 ESNLLQSPSSILSTLDVELP PTTG-1 15 5740 KNDMDITKSYTIEINHRPLL CASC5 [175-194] [895-914]  2 5491 IRVQPQDLIQWAADYFEALS Ropporin-1A 15 5741 RPLASDLKGYFKVKDRTLKH CCDC110 [26-45] [813-832]  2 5492 VKEAAAWALRYIARHNAELS SPAG6 15 5742 GIQNELSVDHSDPVILNVLY CEA [141-160] [394-413]  2 5493 MQDGSESFFFRHGHRGLLTM SPAG8 15 5743 KSETTLEKLKGEIAHLKTSV CEP55 [300-319] [22-41]  2 5494 RLQRIFPKIMPKKPAEEGND SSX-7 15 5744 VEDETVLHNIPYMGDEVLDQ EZH2 [103-122] [122-141]  2 5495 LNAAMNIARALQLSPSLRTY TDRD4 15 5745 ITYLRGLFPESSYGERHLDD HORMAD2 [237-256] [46-65]  2 5496 LYYMTYGKTPFQQIINQISK TTK 15 5746 REKRAERLTSRVKALFSVLN hTERT [724-743] [647-666]  2 5497 LVVALPRVWTDANLTARQRD URLC10 15 5747 KLNILKESLTSFYQEEIQER KIF20A [8-27] [625-644]  2 5498 KLVFRNGDAIEFAQLMVKAA WBP2NL 15 5748 ESALAQQAKHFSALRDVIKA MCAK [114-133] [684-703]  2 5499 ELSLSLPFPIQWETVSIFTR ZNF645 15 5749 EDLKALSQQNVSMDLATFMK MSLN [214-233] [514-533]  3 5500 KKSQNYNIFQLENLYAVISQ ATAD2 15 5750 PPNILKHVVGQFSKVLPHDS SPAG6 [1342-1361] [425-444]  3 5501 FVQNTLTKLLKDRRKMQTVQ BAGE-3 15 5751 KLAYIEPYKRTMQWSKEAKE TDRD4 [82-101] [792-811]  3 5502 EHTTGQLTTMNRQIAVKVEK CASC5 15 5752 SGTVNQIMMMANNPEDWLSL TTK [814-833] [49-68]  3 5503 SIEMEAMKTNILLIQDEKEM CCDC110 16 5753 KEERTKFFEDLILKQAAKPP ATAD2 [568-587] [926-945]  3 5504 AYSGREIIYPNASLLIQNII CEA 16 5754 QAPPSSLLVHKLIFQYVEEK CASC5 [94-113] [2190-2209]  3 5505 LRDQLKARYSTTTLLEQLEE CEP55 16 5755 NLKSKMKPLIFTTQSLIQKV CCDC110 [87-106] [454-473]  3 5506 LNSVLNSNAIKNLPPPLGGA DKK1 16 5756 FVSNLATGRNNSIVKSITVS CEA [33-52] [656-675]  3 5507 KTLNAVASVPIMYSWSPLQQ EZH2 16 5757 RDQLKARYSTTTLLEQLEET CEP55 [99-118] [88-107]  3 5508 LIRKLYILMQDLEPLPNNVV HORMAD2 16 5758 SFLFNLNNDFVVDATRKGNK EZH2 [160-179] [664-683]  3 5509 RVSYRMSQKVHRKMLPSNLS HSPB9 16 5759 VTEMYQFKFKYTKEGATMDF HORMAD2 [92-111] [116-135]  3 5510 RVKALFSVLNYERARRPGLL hTERT 16 5760 FQKNRLFFYRKSVWSKLQSI hTERT [657-676] [568-587]  3 5511 STYDETLHVAKFSAIASQLV KIF20A 16 5761 KQIRQEEMKKLSLLNGGLQE KIF20A [489-508] [215-234]  3 5512 ILRAKGRMHGKFSLVDLAGN MCAK 16 5762 RAKGRMHGKFSLVDLAGNER MCAK [477-496] [479-498]  3 5513 LAFQNMNGSEYFVKIQSFLG MSLN 16 5763 TVAEVQKLLGPHVEGLKAEE MSLN [490-509] [543-562]  3 5514 DAYPEIEKFFPFNPLDFESF PTTG-1 16 5764 LNPDAKLKHQILSALSQVSK SPAG6 [109-128] [219-238]  3 5515 GEISASHVSRMLNYMEQEVI Ropporin-1A 16 5765 SDILELGARIFVSSIKNGMW TDRD4 [173-192] [461-480]  3 5516 SLAEQNRFYKKAAAFVLRAV SPAG6 16 5766 TYGKTPFQQIINQISKLHAI TTK [91-110] [728-747]  3 5517 IPPGFRNLVADRVPNYTSWS SPAG8 17 5767 LHNHSAASATGSLDLSSDFL ATAD2 [213-232] [10-29]  3 5518 KHAWTHRLRERKQLVIYEEI SSX-7 17 5768 SFADTIKVFQTESHMKIVRK CASC5 [161-180] [60-79]  3 5519 NPWEKLSIHLYFDGMSLSYF TDRD4 17 5769 TLEFEMRHLQREYLSLSDKI CCDC110 [1330-1349] [759-778]  3 5520 NQTLDSYRNEIAYLNKLQQH TTK 17 5770 QHTQELFISNITEKNSGLYT CEA [562-581] [457-476]  3 5521 KAASAAARGFPLRTLNDWFS WBP2NL 17 5771 IAELESKTNTLRLSQTVAPN CEP55 [131-150] [139-158]  3 5522 QDVVTPNSVRSQVPALTTTY ZNF645 17 5772 VYEFRVKESSIIAPAPAEDV EZH2 [301-320] [466-485]  4 5523 VEKALAILSQPTPSLVVDHE ATAD2 17 5773 RTLEVQSDYSSYARTSIRAS hTERT [1312-1331] [938-957]  4 5524 AQLLQARLMKEESPVVSWRL BAGE-3 17 5774 QATHRFTFSQIFGPEVGQAS KIF20A [12-31] [116-135]  4 5525 PVQNDLAYANDFASEYYLES CASC5 17 5775 QPDYDLETFVNKAESALAQQ MCAK [1360-1379] [671-690]  4 5526 NSDILKNYNNFYRFLPTAPP CCDC110 17 5776 GVLANPPNISSLSPRQLLGF MSLN [190-209] [50-69]  4 5527 TQDATYLWWVNNQSLPVSPR CEA 17 5777 VAELATRPQNIETLQNAGVM SPAG6 [171-190] [24-43]  4 5528 LESLKQLHEFAITEPLVTFQ CEP55 17 5778 QLIEGLDILFLLKTIEEFYK TDRD4 [394-413] [696-715]  4 5529 SFGNDHSTLDGYSRRTTLSS DKK1 17 5779 DPKQRISIPELLAHPYVQIQ TTK [157-176] [775-794]  4 5530 FRRADEVKSMFSSNRQKILE EZH2 18 5780 RRSQVEQQQLITVEKALAIL ATAD2 [32-51] [1300-1319]  4 5531 KEGVNSHFLLFDKEPINVQV HORMAD2 18 5781 YSQDLGEMTKLNSKRVSFKL CASC5 [201-220] [1432-1451]  4 5532 EDNDHARDGFQMKLDAHGFA HSPB9 18 5782 NENNRMSIEMEAMKTNILLI CCDC110 [45-64] [562-581]  4 5533 EAFTTSVRSYLPNTVTDALR hTERT 18 5783 NGNRTLTLFNVTANDARAYV CEA [113-132] [551-570]  4 5534 FPSLHSFIKEHSLQVSPSLE KIF20A 18 5784 RHRLLEKIRVLEAEKEKNAY CEP55 [517-536] [56-75]  4 5535 MAMDSSLQARLFPGLAIKIQ MCAK 18 5785 NAVASVPIMYSWSPLQQNFM EZH2 [1-20] [102-121]  4 5536 ATQMDRVNAIPFTYEQLDVL MSLN 18 5786 RAVRSLLRSHYREVLPLATF hTERT [333-352] [8-27]  4 5537 QIAHLPLSGVPLMILDEERE PTTG-1 18 5787 KDVLKGQNWLIYTYGVTNSG KIF20A [135-154] [146-165]  4 5538 IRAEELAQMWKVVNLPTDLF Ropporin-1A 18 5788 QEHLVNSADDVIKMIDMGSA MCAK [85-104] [435-454]  4 5539 DILPQLVYSLAEQNRFYKKA SPAG6 18 5789 QNVSMDLATFMKLRTDAVLP MSLN [83-102] [522-541]  4 5540 DYRQEQPETFWIQRAPQLPV SPAG8 18 5790 VVGQFSKVLPHDSKARRLFV SPAG6 [403-422] [432-451]  4 5541 ISYVYMKRKYEAMTKLGFKA SSX-7 18 5791 SVIKILEDNVLLVELFDSLG TDRD4 [46-65] [825-844]  4 5542 WEEEAKVEFLKMVNNKAVSM TDRD4 18 5792 SVVKDSQVGTVNYMPPEAIK TTK [590-609] [ [677-696]  4 5543 PYVQIQTHPVNQMAKGTTEE TTK 19 5793 QNIPSFAPVLLLATSDKPHS ATAD2 [789-808] [882-901]  4 5544 NGDAIEFAQLMVKAASAAAR WBP2NL 19 5794 VQEIAEKQALAVGNKIVLHT CASC5 [119-138] [1234-1253]  4 5545 EYNKEGKYYSKGVKLVRKKK ZNF645 19 5795 LPTAPPNVMSQADTVILDKS CCDC110 [12-31] [204-223]  5 5546 GSSVKEVETYHRTRALRSLR ATAD2 19 5796 SWRINGIPQQHTQVLFIAKI CEA [59-78] [626-645]  5 5547 EPEDGTALDVHFVSTLEPLS BAGE-3 19 5797 LKDALEKNQQWLVYDQQREV CEP55 [32-51] [174-193]  5 5548 EWSDDQAVFTFVYDTIQLTI CASC5 19 5798 FVVDATRKGNKIRFANHSVN EZH2 [2139-2158] [673-692]  5 5549 NPQFSSEKNLVFGTRIEKDL CCDC110 19 5799 IPQDRLTEVIASIIKPQNTY hTERT [97-116] [720-739]  5 5550 DDPTISPSYTYYRPGVNLSL CEA 19 5800 QDQTLAELQNNMVLVKLDLR KIF20A [416-435] [785-804]  5 5551 QQWLVYDQQREVYVKGLLAK CEP55 19 5801 IKIQRSNGLIHSANVRTVNL MCAK [182-201] [17-36]  5 5552 GFINDEIFVELVNALGQYND EZH2 19 5802 PIIRSIPQGIVAAWRQRSSR MSLN [164-183] [258-277]  5 5553 EKVTEMYQFKFKYTKEGATM HORMAD2 19 5803 MSQRQVLQVFEQYQKARTQF SPAG6 [114-133] [1-20]  5 5554 ERNRVATMPVRLLRDSPAAQ HSPB9 19 5804 SLPSPGELYAVQVKHVVSPN TDRD4 [25-44] [1406-1425]  5 5555 TLTDLQPYMRQFVAHLQETS hTERT 19 5805 AKGTTEEMKYVLGQLVGLNS TTK [765-784] [802-821]  5 5556 IAEQYHTVLKLQGQVSAKKR KIF20A 20 5806 VRFDSVGGLSNHIAALKEMV ATAD2 [810-829] [423-442]  5 5557 EVYVTFFEIYNGKLFDLLNK MCAK 20 5807 FPFLDKRYRKIVDVNFQSLL CASC5 [396-415] [2167-2186]  5 5558 YPESVIQHLGYLFLKMSPED MSLN 20 5808 TAEENFLQEIKNAKSEASIY CCDC110 [364-383] [671-690]  5 5559 GLKLGSGPSIKALDGRSQVS PTTG-1 20 5809 VNEEATGQFRVYPELPKPSI CEA [23-42] [130-149]  5 5560 LHSQVAGRLIIRAEELAQMW Ropporin-1A 20 5810 IFELEKKTETAAHSLPQQTK CEP55 [75-94] [202-221]  5 5561 AHSENLAMAVIISKGVPQLS SPAG6 20 5811 YMRLRQLKRFRRADEVKSMF EZH2 [322-341] [23-42]  5 5562 SSDDSPRSALAAATAAAAAA SPAG8 20 5812 YVVELLRSFFYVTETTFQKN hTERT [35-54] [552-571]  5 5563 PEKIQKSFDDIAKYFSKKEW SSX-7 20 5813 MSQGILSPPAGLLSDDDVVV KIF20A [18-37] [1-20]  5 5564 VVEKQFDQLLAFFDSRKKNL TDRD4 20 5814 LLLVHEPKLKVDLTKYLENQ MCAK [189-208] [288-307]  5 5565 WERKSYWKNMLEAVHTIHQH TTK 20 5815 SRDPSWRQPERTILRPRFRR MSLN [622-641] [276-295]  5 5566 SNVFSGRKTGTLFLTSYRVI WBP2NL 20 5816 SKHSVDLAEMVVEAEIFPVV SPAG6 [40-59] [237-256]  5 5567 KRTYLSQKSLQAHIKRRHKR ZNF645 20 5817 SILVQFVDYGSTAKLTLNRL TDRD4 [121-140] [1510-1529]  6 5568 PASPARPRYRLSSAGPRSPY ATAD2 20 5818 VERGAVPLEMLEIALRNLNL TTK [325-344] [170-189]  6 5569 LQARLMKEESPVVSWRLEPE BAGE-3 21 5819 RKIRKKSNWYLGTIKKARKI ATAD2 [15-34] [1164-1183]  6 5570 NQDARILAMTPESIYSNPSI CASC5 21 5820 AGKLNLSPSQYINEENLPVY CASC5 [429-448] [1726-1745]  6 5571 LEALVKKLLPFRETVSKFHV CCDC110 21 5821 ELKKHSQENIKFENSISRLT CCDC110 [315-334] [721-740]  6 5572 SASGHSRTTVKTITVSAELP CEA 21 5822 QQSTQELFIPNITVNNSGSY CEA [482-501] [278-297]  6 5573 EEKDVLKQQLSAATSRIAEL CEP55 21 5823 LKELRKARNQITQLESLKQL CEP55 [123-142] [381-400]  6 5574 LQQNFMVEDETVLHNIPYMG EZH2 21 5824 FLFNLNNDFVVDATRKGNKI EZH2 [116-135] [665-684]  6 5575 QDLEPLPNNVVLTMKLHYYN HORMAD2 21 5825 LWGSRHNERRFLRNTKKFIS hTERT [169-188] [477-496]  6 5576 VVQVDGQWLMVTGQQQLDVR HSPB9 21 5826 LNGGLQEEELSTSLKRSVYI KIF20A [69-88] [228-247]  6 5577 LGLDDIHRAWRTFVLRVRAQ hTERT 21 5827 SLRSRSTRMSTVSELRITAQ MCAK [681-700] [106-125]  6 5578 ILIKQDQTLAELQNNMVLVK KIF20A 21 5828 SGKKAREIDESLIFYKKWEL MSLN [781-800] [304-323]  6 5579 FVNKAESALAQQAKHFSALR MCAK 21 5829 ALALGRLANYNDDLAEAVVK SPAG6 [679-698] [62-81]  6 5580 LSTERVRELAVALAQKNVKL MSLN 21 5830 SLYLTGAVATIILQVDSEEN TDRD4 [77-96] [1051-1070]  6 5581 NLLQSPSSILSTLDVELPPV PTTG-1 21 5831 SEEEKKNLSASTVLTAQESF TTK [177-196] [196-215]  6 5582 NRAELTPELLKILHSQVAGR Ropporin-1A 22 5832 EIVVIGATNRLDSIDPALRR ATAD2 [63-82] [567-586]  6 5583 LQVFEQYQKARTQFVQMVAE SPAG6 22 5833 ADGTSLDFSTYRSSQMESQF CASC5 [7-26] [1856-1875]  6 5584 PQKQPPWEFLQVLEPGARGL SPAG8 22 5834 STDNLSSNIIIHPSENSDIL CCDC110 [239-258] [175-194]  6 5585 THRLRERKQLVIYEEISDPE SSX-7 22 5835 PNASLLIQNIIQNDTGFYTL CEA [165-184] [103-122]  6 5586 VPKLSEFELIKMTNEIQSNL TDRD4 22 5836 GETENREKVAASPKSPTAAL CEP55 [1199-1218] [414-433]  6 5587 GQNESFARIQVRFAELKAIQ TTK 22 5837 MFSSNRQKILERTEILNQEW EZH2 [104-123] [41-60]  6 5588 GWEGQATFKLVFRNGDAIEF WBP2NL 22 5838 RNTKKFISLGKHAKLSLQEL hTERT [106-125] [489-508]  6 5589 SLSLPFPIQWETVSIFTRKH ZNF645 22 5839 SPMFESTAADLGSVVRKNLL KIF20A [216-235] [21-40]  7 5590 REDKVIPVTRSLRARNIVQS ATAD2 22 5840 EEQVHSIRGSSSANPVNSVR MCAK [122-141] [170-189]  7 5591 TPEDLMLSQYVYRPKIQIYR CASC5 22 5841 GLKAEERHRPVRDWILRQRQ MSLN [1928-1947] [557-576]  7 5592 FHSRVPRYTLSFLDQTKHEM CCDC110 22 5842 QEIKAEPGSLLQEYINSINS SPAG6 [373-392] [460-479]  7 5593 IIQNDTGFYTLHVIKSDLVN CEA 22 5843 HFYIRKYSQIKDAKVLEKKV TDRD4 [112-131] [429-448]  7 5594 VERQTITQLSFELSEFRRKY CEP55 22 5844 LNKLQQHSDKIIRLYDYEIT TTK [250-269] [575-594]  7 5595 WRKRVKSEYMRLRQLKRFRR EZH2 23 5845 KEMVVFPLLYPEVFEKFKIQ ATAD2 [15-34] [439-458]  7 5596 DYQPLGFKEGVNSHFLLFDK HORMAD2 23 5846 EENMDITKSHTVAIDNQIFK CASC5 [194-213] [507-526]  7 5597 QQQLDVRDPERVSYRMSQKV HSPB9 23 5847 NSISRLTEDKILLENYVRSI CCDC110 [82-101] [734-753]  7 5598 DYSSYARTSIRASLTFNRGF hTERT 23 5848 EPEIQNTTYLWWVNNQSLPV CEA [945-964] [346-365]  7 5599 SPYARILRSRRSPLLKSGPF KIF20A 23 5849 IPYMGDEVLDQDGTFIEELI EZH2 [867-886] [131-150]  7 5600 PKESLRSRSTRMSTVSELRI MCAK 23 5850 HVRKAFKSHVSTLTDLQPYM hTERT [103-122] [754-773]  7 5601 DRVNAIPFTYEQLDVLKHKL MSLN 23 5851 DLKPLLSNEVIWLDSKQIRQ KIF20A [337-356] [200-219]  7 5602 PALPKATRKALGTVNRATEK PTTG-1 23 5852 KAHTPFRESKLTQVLRDSFI MCAK [54-73] [534-553]  7 5603 SVMNVGRFTEEIEWLKFLAL Ropporin-1A 23 5853 RELAVALAQKNVKLSTEQLR MSLN [106-125] [83-102]  7 5604 PTIQQTAALALGRLANYNDD SPAG6 23 5854 VRYYSPGYSDTLLQRVDSYQ SPAG6 [55-74] [486-505]  7 5605 GSESFFFRHGHRGLLTMQLK SPAG8 23 5855 KFKSQSLRSHFEKNTTLHYH TDRD4 [303-322] [650-669]  7 5606 SGPKRGKHAWTHRLRERKQL SSX-7 23 5856 NPEDWLSLLLKLEKNSVPLS TTK [155-174] [61-80]  7 5607 KIVAIKEFNPLSILVQFVDY TDRD4 24 5857 ISAKDFEVAMQKMIPASQRA ATAD2 [1499-1518] [674-693]  7 5608 LSDALLNKLIGRYSQAIEAL TTK 24 5858 LLPNEIAIRPMDKTVLFTDN CASC5 [79-98] [1167-1186]  7 5609 ALIPNGESLLKRSPNVELSF WBP2NL 24 5859 DEVDSVLLSASKILNSSEGV CCDC110 [14-33] [11-30]  7 5610 DIQAPPPELSLSLPFPIQWE ZNF645 24 5860 EPETQDATYLWWVNNQSLPV CEA [207-226] [168-187]  8 5611 KRYYLRQRKATVYYQAPLEK ATAD2 24 5861 RQVYEFRVKESSIIAPAPAE EZH2 [292-311] [464-483]  8 5612 PHVSKERIQQSLSNPLSISL CASC5 24 5862 DGLRPIVNMDYVVGARTFRR hTERT [566-585] [628-647]  8 5613 LKEFKKIISKYNVLQGQNKT CCDC110 24 5863 DISMYGKEELLQVVEAMKTL KIF20A [505-524] [554-573]  8 5614 PRLQLSNDNRTLTLLSVTRN CEA 24 5864 DDVAAINPELLQLLPLHPKD MCAK [367-386] [59-78]  8 5615 HQLHVILKELRKARNQITQL CEP55 24 5865 LDQDQQEAARAALQGGGPPY MSLN [375-394] [215-234]  8 5616 GPNAKSVQREQSLHSFHTLF EZH2 24 5866 REIAKHTPELSQLVVNAGGV SPAG6 [266-285] [276-295]  8 5617 STGFHSMKVKVMTEATKVID HORMAD2 24 5867 NVWQPDAIEVLQQLLSKRQV TDRD4 [224-243] [1301-1320]  8 5618 YRMSQKVHRKMLPSNLSPTA HSPB9 24 5868 NESFARIQVRFAELKAIQEP TTK [95-114] [106-125]  8 5619 RLPRLPQRYWQMRPLFLELL hTERT 25 5869 LSLEHIGRRRLRSAGAAQKK ATAD2 [378-397] [29-48]  8 5620 DGGILPRSLALIFNSLQGQL KIF20A 25 5870 NLNNLNGKTGEFLAFQTVHL CASC5 [176-195] [1586-1605]  8 5621 DSSFPNWEFARMIKEFRATL MCAK 25 5871 EKNIQLSLEKQQMMEALDQL CCDC110 [224-243] [527-546]  8 5622 LLATQMDRVNAIPFTYEQLD MSLN 25 5872 RNNSIVKSITVSASGTSPGL CEA [331-350] [664-683]  8 5623 KMTEKTVKAKSSVPASDDAY PTTG-1 25 5873 QRGSKKHLLLAPSDVAGWGI EZH2 [92-111] [607-626]  8 5624 KMLKEFAKAAIRVQPQDLIQ Ropporin-1A 25 5874 TYVPLLGSLRTAQTQLSRKL hTERT [16-35] [1088-1107]  8 5625 IQEPEIALKRIAASALSDIA SPAG6 25 5875 QNLVPFRDSKLTRVFQGFFT KIF20A [176-195] [454-473]  8 5626 RKLFEVESVTHHDYRMELAQ SPAG8 25 5876 KREEKKAQNSEMRMKRAQEY MCAK [373-392] [204-223]  8 5627 MNGDDAFARRPRAGAQIPEK SSX-7 25 5877 PQAPRRPLPQVATLIDRFVK MSLN [1-20] [409-428]  8 5628 RRGQIIRMVTDTLVEVLLYD TDRD4 25 5878 LSEEPEDHIKAAAAWALGQI SPAG6 [980-999] [344-363]  8 5629 KIIRLYDYEITDQYIYMVME TTK 25 5879 EEFARTTDDYLSNLIKAKSY TDRD4 [584-603] [210-229]  8 5630 HTENRRGALIPNGESLLKRS WBP2NL 25 5880 DSRGQTTKARFLYGENMPPQ TTK [7-26] [230-249]  8 5631 TTYDPSSGYIIVKVPPDMNS ZNF645 26 5881 SEKLQLDLSSINISAKDFEV ATAD2 [318-337] [662-681]  9 5632 SSSKYAPSYYHVMPKQNSTL ATAD2 26 5882 RNKKNSRRVSFADTIKVFQT CASC5 [1114-1133] [51-70]  9 5633 QLNNRDRRNVDFTSSHATAV CASC5 26 5883 DLPTENQEENLSMEKSHHFE CCDC110 [1302-1321] [115-134]  9 5634 MSQADTVILDKSKITVPFLK CCDC110 26 5884 TVYAEPPKPFITSNNSNPVE CEA [212-231] [317-336]  9 5635 QQHTQVLFIAKITPNNNGTY CEA 26 5885 VVDATRKGNKIRFANHSVNP EZH2 [634-653] [674-693]  9 5636 VYDQQREVYVKGLLAKIFEL CEP55 26 5886 SLLRSHYREVLPLATFVRRL hTERT [186-205] [12-31]  9 5637 YQHLEGAKEFAAALTAERIK EZH2 26 5887 QGTIKDGGILPRSLALIFNS KIF20A [325-344] [171-190]  9 5638 IKKASVLLIRKLYILMQDLE HORMAD2 26 5888 IRALGQNKAHTPFRESKLTQ MCAK [153-172] [527-546]  9 5639 RSLLRSHYREVLPLATFVRR hTERT 26 5889 LFSLGWVQPSRTLAGETGQE MSLN [11-30] [25-44]  9 5640 LNQNSSRSHSIFSIRILHLQ KIF20A 26 5890 TNTLPVLLSLYMSTESSEDL SPAG6 [373-392] [377-396]  9 5641 AKHFSALRDVIKALRLAMQL MCAK 26 5891 ISPEKIYVQWLLTENLLNSL TDRD4 [691-710] [926-945]  9 5642 RQLDVLYPKARLAFQNMNGS MSLN 26 5892 ISVKGRIYSILKQIGSGGSS TTK [479-498] [518-537]  9 5643 SQVSTPRFGKTFDAPPALPK PTTG-1 27 5893 KIDLHKYLTVKDYLRDIDLI ATAD2 [39-58] [1037-1056]  9 5644 PELLKILHSQVAGRLIIRAE Ropporin-1A 27 5894 QDLIKDPRNLLANQTLVYSQ CASC5 [69-88] [1415-1434]  9 5645 LKDKDEYVKKNASTLIREIA SPAG6 27 5895 IKNAKSEASIYKNSLSEIGK CCDC110 [260-279] [680-699]  9 5646 FEVESVTHHDYRMELAQAGT SPAG8 27 5896 ETQNPVSARRSDSVILNVLY CEA [376-395] [216-235]  9 5647 DIAKYFSKKEWEKMKSLEKI SSX-7 27 5897 IFAKRAIQTGEELFFDYRYS EZH2 [27-46] [710-729]  9 5648 RSHFEKNTTLHYHPPILPKE TDRD4 27 5898 TDALRGSGAWGLLLRRVGDD hTERT [657-676] [128-147]  9 5649 IGSGGSSKVFQVLNEKKQIY TTK 27 5899 PVPANIRFSIWISFFEIYNE KIF20A [531-550] [292-311]  9 5650 GGWEGQATFKLVFRNGDAIE WBP2NL 27 5900 ETGQEAAPLDGVLANPPNIS MSLN [105-124] [40-59]  9 5651 SASEFASHHYNLNILPQFTE ZNF645 27 5901 YYSPGYSDTLLQRVDSYQPL SPAG6 [351-370] [488-507] 10 5652 QEEDTFRELRIFLRNVTHRL ATAD2 27 5902 YDDGLWYRAKIVAIKEFNPL TDRD4 [981-1000] [1490-1509] 10 5653 RPMDKTVVFVDNHVELEMTE CASC5 27 5903 QVLNEKKQIYAIKYVNLEEA TTK [963-982] [541-560] 10 5654 LQNVSMVQSEISEILNKSII CCDC110 28 5904 SLDLSSDFLSLEHIGARRLR ATAD2 [74-93] [21-40] 10 5655 PPAQYSWLIDGNIQQHTQEL CEA 28 5905 FQDLSINSADKIHITRSHIM CASC5 [443-462] [398-417] 10 5656 EVHNLNQLLYSQRRADVQHL CEP55 28 5906 SKMKPLIFTTQSLIQKVETY CCDC110 [275-294] [457-476] 10 5657 EWKQRRIQPVHILTSVSSLR EZH2 28 5907 TYLWWVNGQSLPVSPRLQLS CEA [59-78] [531-550] 10 5658 KRYLRMAVLTLYTDPMGSEK HORMAD2 28 5908 YRYSQADALKYVGIEREMEI EZH2 [96-115] [726-745] 10 5659 GLLLDTRTLEVQSDYSSYAR hTERT 28 5909 SVWSKLQSIGIRQHLKRVQL hTERT [932-951] [579-598] 10 5660 TVKEMVKDVLKGQNWLIYTY KIF20A 28 5910 FRDSKLTRVFQGFFTGRGRS KIF20A  [140-159] [459-478] 10 5661 EELSSQMSSFNEAMTQIREL MCAK 28 5911 VIQHLGYLFLKMSPEDIRKW MSLN [625-644] [368-387] 10 5662 QGGIPNGYLVLDLSMQEALS MSLN 28 5912 AVSMKVFREEDGVLIVDLQK TDRD4 [587-606] [606-625] 10 5663 AHLPLSGVPLMILDEERELE PTTG-1 28 5913 LNKLIGRYSQAIEALPPDKY TTK [137-156] [84-103] 10 5664 GPDGIITVNDFTQNPRVQLE Ropporin-1A 29 5914 RIRSRYSGVNQSMLFDKLIT ATAD2 [193-212] [159-178] 10 5665 LPHDSKARRLFVTSGGLKKV SPAG6 29 5915 EKLQDGRITIREFFILLQVH CASC5 [440-459] [1887-1906] 10 5666 SYQPPGNVYWPLRGKREAML SPAG8 29 5916 IAESENQIQPQSALKVLQQQ CCDC110 [334-353] [43-62] 10 5667 SSDMPVSLRDALVFMELAKF TDRD4 29 5917 NGIPQQHTQVLFIAKITPNN CEA [632-651] [630-649] 10 5668 KAVERGAVPLEMLEIALRNL TTK 29 5918 FSVLNYERARRPGLLGASVL hTERT [168-187] [662-681] 10 5669 WEGQATFKLVFRNGDAIEFA WBP2NL 29 5919 PRSLALIFNSLQGQLHPTPD KIF20A [107-126] [181-200] 10 5670 PQFTQTDAMDHRRWPAWKRL ZNF645 29 5920 SLSPEELSSVPPSSIWAVRP MSLN [377-396] [451-470] 11 5671 AVLQKMDDMKKMRRQRMREL ATAD2 29 5921 QDKNQWRRGQIIRMVTDTLV TDRD4 [183-202] [974-993] 11 5672 EKSTKIDTTSFLANLKLHTE CASC5 29 5922 ITDSITLKNKTESSLLAKLE TTK [198-217] [350-369] 11 5673 LKNYNNFYRFLPTAPPNVMS CCDC110 30 5923 IYKDRMKIGASLADVDPMQL ATAD2 [194-213] [400-419] 11 5674 NGNRTLTLFNVTANDTASYK CEA 30 5924 RLLGEEIEYLKRWGPNYNLM CASC5 [195-214] [2237-2256] 11 5675 FNSSINNIHEMEIQLKDALE CEP55 30 5925 LHSVEEKLSGDSVNSLPQSV CCDC110 [160-179] [139-158] 11 5676 NGDHRIGIFAKRAIQTGEEL EZH2 30 5926 VHNLPQHLFGYSWYKGERVD CEA [703-722] [55-74] 11 5677 ITNEHESLKMVKKLFATSIS HORMAD2 30 5927 AFKSHVSTLTDLQPYMRQFV hTERT [25-44] [758-777] 11 5678 DKEQLRPSFLLSSLRPSLTG hTERT 30 5928 RILRSRRSPLLKSGPFGKKY KIF20A [337-356] [871-890] 11 5679 SELALRRSQRLAASASTQQL KIF20A 30 5929 RITKANVDLLPRGAPERQRL MSLN [670-689] [143-162] 11 5680 ITAQENDMEVELPAAANSRK MCAK 30 5930 VGDDGTIFVVPKLSEFELIK TDRD4 [122-141] [1190-1209] 11 5681 EDLDALPLDLLLFLNPDAFS MSLN 30 5931 VQNSHFKEPLVSDEKSSELI TTK [113-132] [330-349]

Example 17—Personalised Selection of Peptides to Treat Cancer

Effective immunotherapy for cancer patients stimulates T cell responses (ideally CD4+ and CD8+ T cell responses) that target TAA expressed by the cancer cells of the specific patient.

For treatment of a specific cancer patient, peptides comprising one or more of the 3286 hotspot amino acid sequences can be selected based on (i) cancer type (select peptides comprising hotspot sequences that are fragments of TSAs that are associated with the patient's cancer); (ii) TSA expression or TSA expression rate (sample patient's cancer cells and select peptides comprising hotspot sequences that are fragments of a TSA in fact expressed in the patient's cancer cells; or select peptides comprising hotspot sequences that are fragments of TSAs that are most frequently expressed in the patient's type of cancer); (iii) patient HLA genotype (select peptides comprising fragments of TSAs that comprise an amino acid sequence that is a T cell epitope capable of binding to at least three HLA class I alleles of the patient (HLA class I-binding PEPI3+) (and ideally also comprise an amino acid sequence that is a T cell epitope capable of binding to multiple HLA class II alleles of the patient (HLA class II-binding PEPI2/3/4/5+)).

To illustrate the options for selecting peptides comprising hotspot amino acid sequences to treat individual patients, HLA class I-binding PEPI3+ were identified in the hotspot sequences for three colorectal cancer patients, one ovarian cancer patient and three breast cancer patients with known HLA genotypes. Only hotspot sequences that are fragments of TSA associated with the corresponding cancer (colorectal, ovarian, breast, Table 24) were considered. The number of hotspots sequences containing such a PEPI3+ and the number of antigens that could be targeted using selected peptides comprising a hotspot amino acid sequence are shown in Table 26. As expected, more hotspots containing PEPI3+ were identified and more TSA could be targeted using the hotspot sequences identified following a greater number of cycles of the method described in Example 16.

TABLE 26 Number of selectable peptides matching to the patient HLA background) from antigens related to the indication. In case of MaxCycle = 1, each antigen has only one potential peptide, therefore the peptide and antigen are selected together. The MaxCycle >1 means that more than one peptides are related to a single antigen and hopefully more than one is matching to the patient's HLA set, therefore #peptides >= #antigens. Patient MaxCycle = 1 MaxCycle = 3 MaxCycle = 5 MaxCycle = 30 Indication ID #Peptides #AG #Peptides #AG #Peptides #AG #Peptides #AG Colorectal CRC_P1 16 16 32 24 36 25 63 27 (70 AGs) CRC_P2 13 13 29 15 34 27 54 28 CRC_P3 14 14 36 31 48 37 98 43 Ovarian OC_P1 10 10 17 14 28 20 51 22 (54 AGs) Breast BRC_P1 27 17 45 31 60 34 99 35 (70 AGs) BRC_P2 23 13 43 35 48 36 86 36 BRC_P3 13 13 26 19 33 23 60 28

Table 27 shows the peptide/hotspot amino acid sequences that are fragments of the breast cancer-associated TSA identified just in the first cycle of the method described in Example 16 that are expected to induce T cell responses in the three breast cancer patients of Table 26.

TABLE 27 Options for peptide selection for breast cancer patients. Sequences are fragments of known  breast cancer-associated CTAs and were identi- fied in first cycle of method described in  Example 16. “+” indicates peptide comprises  subject-matched HLA class I-binding PEPI3+ SEQ ID BRC_ BRC_ BRC_ NO Sequence P1 P2 P3   4 PHNFRVYSYSGTGIMKPLDQ − − −   7 DEVSFYANRLTNLVIAMARK + + −   8 IDDLSFYVNRLSSLVIQMAH − + +  10 ARAVFLALSAQLLQARLMKE − − −  16 QTTQNGRFYAISARFKPFSN − − −  19 EGKDPAFTALLTTQLQVQRE − − −  20 QGPTAVRKRFFESIIKEAAR − − −  21 ATAQLQRTPMSALVFPNKIS − + −  22 LDMVHSLLHRLSHNDHILIE + − −  26 HTRFTQSGTMKIHILQKHGE + − −  29 NTGEMSSNSTALALVRPSSS − − −  32 NLLRGIDSLFSAPMDFRGLP − + −  35 SERVRTYWIIIELKHKAREK + + −  40 EHLEVKFMNPYNAVLTKKFQ + + −  41 SGSSYFVLANGHILPNSENA − − −  42 ISDTKDYFMSKTLGIGRLKR + − −  44 EEMRSHYVAQTGILWLLMNN − − −  45 SRGKSTYYWPRPRRYVQPPE − − −  46 WRGRSTYYWPRPRRYVQPPE − − −  48 ALSRHMSSLSHISPFSHSSH − + −  51 RLNDLQMSNFVNLKNITYLV − + −  54 KKVNFLDMSLDDIIIYKELE − − +  57 KLRYRYTLDDLYPMMNALKL + + +  60 PDSRLLQLHITMPFSSPMEA + + −  61 QRNVAIMKSIIPAIVHYSPD + − −  62 SEELNIILQGNIILSTEKSK − − −  64 VKVLEYVIKVSARVRFFFPS − + +  65 DDTTAMASASSSATGSFSYP − − −  66 DPTSHSYVLVTSLNLSYDGI + + −  67 ALSRKMAELVHFLLLKYRAR + + −  68 GREDSVFAHPRKLLMQDLVQ + − +  69 FPVIFSKASSSLQLVFGIEL − − −  70 VNARVRIAYPSLREAALLEE − − −  71 KSPQGASAIPTAIDFTLWRQ − − −  72 KKLLTQYFVQENYLEYRQVP − − +  73 RAPEEAIWEALSVMGLYDGR − + −  74 PAQLEFMFQEALKLKVAELV + + +  80 RPVSSFFSYTLASLLQSSHE − − +  81 ATVMASESLSVMSSNVSFSE + − −  83 RSQAGMFIYSNNRLIKMHEK + − +  87 EEAFSRASLVSVYNSYPYYP + − −  90 QSQGSVLAFTRTFIATPGSS − + −  91 KRASQYSGQLKVLIAENTML + − −  93 KEFTVSGNILTIRLTAADHR − − −  96 EKSTKYVFDSAPSHSISART − − −  97 NSPLPFQWRITHSFRWMAQV − + + 105 KEMELWMKAMLDAALVQTEP + − − 106 QYAHKLAFLVGQSIHREPNL + − − 107 RSVVGFVASINLTLTKWYSR + + + 110 KAVSQDMVIYSTEIHYSSKG − − − 111 RLDQLLRHVMNPLETLSITN − + − 116 PPAFINMAATGVSSMSTRDQ + − − 118 NNNIEKMITAFEELRVQAEN − + − 122 QSSGISFQSKYLSFFILGQT − − − 124 PDNIPAFAAAYFESLLEKRE + + − 126 RDAVKFFVAVPGQVISPQSS + − − 127 KKMKTSESSTILVVRYRRNV − − + 129 AEIQALTFLSSDYLSRVYLP − − − 130 RIQVEHPQMTFGRLHRIIPK + − + 131 VERPQMTFGRLQGISPKIMP + − − 132 QRPQMTFGRLQGIFPKIMPK + − − 133 SEKIVYVYMKLNYEVMTKLG − + − 134 NQVEHPQMTFGRLQGIFPKI − − − 135 EFEETAKKVRRAIEQLAAMD − − − 142 LSQFWEFSETTASTVSTTLH − − − 149 EELQKVQFEKVSALADLSST + + − 155 VGILHLGSRQKKIRIQLRSQ − − −

Example 18—Selection of Polynucleic Acids for Treatment of Cancer

Some peptides that are difficult to manufacture and use as peptide vaccines can still be used in vaccines and immunotherapy if delivered to patients as peptide-encoding polynucleic acids or vectors. To optimally design a set of peptides for treating cancer to be encoded by a nucleic acid or vector for administration to patients, the method of Example 16 was repeated but without eliminating hotspot sequences that did not meet the peptide manufacturing feasibility requirements. Table 28 shows the hotspot sequences identified in the first 20 cycles and the TSA of which they are a fragment.

TABLE 28 Hotspot Sequences and corresponding TAA Source Source SEQ antigen(s) SEQ antigen(s) Cy- ID and AA Cy- ID and AA cle NO AA Sequence position cle NO AA Sequence position  1 2787 AGDGRLRLARLALVLLGWVS 5T4 19 4110 PFKCSMCKYASVEASKLKRH CTCFL [11-30] [341-360]  1 2788 ELLHTFLAWKTSYLVLRPHD ADAM2 19 4111 DSLCPQVINAALTLAARPQS CTNNA2 [245-264] [456-475]  1 2789 NKTLGTFSIAVAHHLGHNLG ADAM29 19 4112 FYEHIITVGTGQGSLLFYDI DCAF12 [320-339] [348-367]  1 2790 IARRHPFLYAPTILLWAARY AFP 19 4113 HGRLLSADTKGWVRLQFHAG DPPA2 [166-185] [227-246]  1 2791 MAARAVFLALSAQLLQARLM BAGE-1 19 4114 NRQCQCTSVGAQNTVICSKL EpCAM [1-20] [43-62]  1 2792 MAAGVVFLALSAQLLQARLM BAGE-2 19 4115 CSPGFFKFEASESPCLECPE EPHA2 [1-20]; [276-295] BAGE-3 [1-20]  1 2793 MAAGAVFLALSAQLLQARLM BAGE-5 19 4116 GDFQEAMTHLQHKLICTRKP FAM46D [1-20] [209-228]  1 2794 YKDAYKFAADVRLMFMNCYK BRDT 19 4117 PQDQSCWAFLPDLCLCRVFW FBXO39 [331-350] [10-29]  1 2795 ASQLASKMHSLLALMVGLLT CAGE1 19 4118 EQLKCLLDECILKQKSIIKL FSIP1 [610-629] [406-425]  1 2796 WAICMLRVALATVYFQEEFL CALR3 19 4119 HEIFNLLSFTLNPLEGKLQQ GASZ [9-28] [228-247]  1 2797 PEVLHMIYMRALQIVYGIRL CDCA1 19 4120 FSHSSHMLTTPTPMHPPSSL GATA-3 [42-61] [410-429]  1 2798 PCEYYFRVYHSLCPISWVES COX6B2 19 4121 SSRRRELIQKLKSFISFYSA Glypican- [55-74] 3 [385-404]  1 2799 EAARCMARDFVKHLKKKLKR CT45 19 4122 LHDPSGYLAEADLSYTWDFG gp100 [168-187] [244-263]  1 2800 LIRKIYILMQNLGPLPNDVC CT46 19 4123 CYVNDIVLAILELLKYHQRV HDAC1 [153-172] [151-170]  1 2801 HFVLLDMVHSLLHRLSHNDH CT47 19 4124 YGAGHPMKPHRLALTHSLVL HDAC3 [120-139] [18-37]  1 2802 NYIDQFLLTSFPTFTSVGVL CTAGE1 19 4125 IGTGAVIIIFCIALILGAFF IGFS11 [34-53] [247-266]  1 2803 FFAVLFLWRSFRSVTSRLYV CTAGE2 19 4126 CTNGSEVQSSWAETTYWISP IL13RA2 [23-42] [113-132]  1 2804 HCDVCMFTSSRMSSFNRHMK CTCFL 19 4127 MPKTGFLIIVLVMIAMEGGH MAGE-A1 [258-277] [189-208]  1 2805 MNFYLLLASSILCALIVFWK CXorf61 19 4128 NMMGLYDGMEHLIYGEPRKL MAGE-A10 [1-20] [251-270]  1 2806 AATVPATAAGVVAVVVPVPA DBPC 19 4129 LGLVGAQALQAEEQEAAFFS MAGE-A11 [15-34] [133-152]  1 2807 WVPTTHRRMISLFLLPACIF DPPA2 19 4130 FTKAEMLGSVIRNFQDFFPV MAGE-A12 [249-268] [130-149]  1 2808 CSERVRTYWIIIELKHKARE EpCAM 19 4131 LLGDNQVMPKTGLLIIVLAI MAGE-A2 [135-154] [189-208]  1 2809 QYTEHFMAAGYTAIEKVVQM EPHA2 19 4132 LVHFLLLKYRAREPVTKAEM MAGE-A3 [920-939] [116-135]  1 2810 YQPAPYFAAEARYPIYVIPE FAM46D 19 4133 LLGDNQIMPKTGFLIIILAI MAGE-A6 [349-368] [189-208]  1 2811 ETLIIAVLVSASIANLWLWM FATE1 19 4134 HAETSYEKVINYLVMLNARE MAGE-A9 [162-181] [277-296]  1 2812 CSGSSYFVLANGHILPNSEN FMR1NB 19 4135 DPPRFQFLWGPRAYAETSKM MAGE-B2 [91-110] [267-286]  1 2813 TLELYTSYLYLSMAFYFNRD FTHL17 19 4136 DGNQSSAWTLPRNGLLMPLL MAGE-B4 [26-45] [186-205]  1 2814 TGILWLLMNNCFLNLSPRKP GAGE-1 19 4137 SILKADMLKCVRREYKPYFP MAGE-B6 [119-138] [215-234]  1 2815 SVDSNFQYGWTPLMYAASVA GASZ 19 4138 DYFPVILKRAREFMELLFGL MAGE-C2 [71-90] [176-195]  1 2816 FEFVGEFFTDVSLYILGSDI Glypican- 19 4139 GSAATWGQDVTSVPVTRPAL MUC-1 3 [89-108] [142-161]  1 2817 GKTLCYLMPGFIHLVLQPSL HAGE 19 4140 NVSCNQLDTGVPLLCEALCS NLRP4 [291-310] [757-776]  1 2818 AKCVEFVKSFNLPMLMLGGG HDAC1 19 4141 PLGTPMLIEDGYAVTQAELF NR6A1 [282-301] [265-284]  1 2819 EASGFCYVNDIVLAILELLK HDAC2 19 4142 AVTCGFHHIHEQIMEYIRKL NY-BR-1 [147-166] [189-208]  1 2820 GECVEYVKSFNIPLLVLGGG HDAC3 19 4143 AEMDGAAAAKQVMALKDTIG ODF2 [277-296] [214-233]  1 2821 ALINLNVIWMVTPLSNANQP IGFS11 19 4144 PMVMGPNTVGKASQPSFSIK ODF3 [51-70] [145-164]  1 2822 GYLGYLYLQWQPPLSLDHFK IL13RA2 19 4145 AVFQCAQCHAVLADSVHLAW OIP5 [44-63] [76-95]  1 2823 CDDSYHTFCLIPPLHDVPKG JARID1B 19 4146 GFMITLSTDGVIICVAENIS PASD1 [330-349] [43-62]  1 2824 DDAAPRVEGVPVAVHKHALH KAAG1 19 4147 ADIFAFGLTLWEMMTLSIPH PBK [3-22] [228-247]  1 2825 CPDESWALKAIEALSGKIEL KOC1 19 4148 TFKLCHMYWNWPGTIRVPAP PIWIL2 [44-63] [924-943]  1 2826 GIFIIVVFVYLTVENKSLFG LEMD1 19 4149 NNFTLAFIVVKKRINTRFFL PIWIL3 [162-181] [752-771]  1 2827 KYSAHAFQFSPRNVLWLLVV LIPI 19 4150 IPQHKLSLWPGFAISVSYFE PIWIL4 [13-32] [235-254]  1 2828 VDPTGHSFVLVTSLGLTYDG MAGE-A10 19 4151 FDECGITDDQLLALLPSLSH PRAME [194-213] [385-404]  1 2829 VALSRKMAELVHFLLLKYRA MAGE-A12 19 4152 AMNFDFPFKKGSGIPLLTTN RAGE-1 [107-126] [234-253]  1 2830 FRAALSKKVADLIHFLLLKY MAGE-A5 19 4153 LEEDLQIATKTICQLTEEKE SCP-1 [105-124] [341-360]  1 2831 VKDPVAWEAGMLMHFILRKY MAGE-B1 19 4154 SCHSFQSAYLIVDRDEAWVL SCRN1 [104-123] [149-168]  1 2832 WTLPRNGLLMPLLSVIFLNG MAGE-B4 19 4155 CCSLDLLMKKIKGKDLQLLE se57-1 [193-212] [85-104]  1 2833 FLWGPRAYAETTKMRVLRVL MAGE-B6 19 4156 KATEYLVIIGASEFLPIYLE SLCO6A1 [357-376] [392-411]  1 2834 RRANGYRALMDKSLHVGTQC MART1 19 4157 GSDQHVASHLPLHPIMHNKP SOX-6 [49-68] [32-51]  1 2835 PARWSFRAYTSVLYFNPWMR MORC1 19 4158 GDTFLLLIQSLKNNLIEKDP SPAG1 [232-251] [847-866]  1 2836 VFCLTVVCWTWVPLRGPSSP NA17-A 19 4159 KSDSPKSAQKFSLILKILSM SPO11 [12-31] [101-120]  1 2837 NQKICIFVNHSTAPYSVKNK NXF2 19 4160 NQEKLCMLTAELLEYCNAPK TDRD1 [189-208] [965-984]  1 2838 NTALHYAVYSEILSVVAKLL NY-BR-1 19 4161 PVWGLQLLLPLLLPSFIHFS TEX101 [84-103] [230-249]  1 2839 MVILTILAIAPSVPFAANCF NYD- 19 4162 LKRLSSFIGAGSPSLVKACD TEX14 TSPG [1285-1304] [348-367]  1 2840 SRLLEFYLAMPFATPMEAEL NY-ESO-1 19 4163 LSKPIFCFVKDVHPDLEMND TEX15 [85-104] [2511-2530]  1 2841 CLCDYKLYCLRPSLRELERK ODF1 19 4164 SRAAQMAVPSSRILQLSKPK THEG [74-93] [256-275]  1 2842 LRAPAYSFRGAPMLLAENCS ODF3 19 4165 IALQEKESEIQLLKEHLCLA TSGA10 [46-65] [583-602]  1 2843 IPVGFHLYSTHAALAALRGH OIP5 19 4166 AGCQKSEAPPIYLQVSSYQH TSP50 [142-161] [332-351]  1 2844 FPTYDYFNQVTLQLLDGFMI PASD1 19 4167 ALLAGLVSLLCRHKRKQLPE TYR [27-46] [490-509]  1 2845 ASQDPFPAAIILKVALNMAR PBK 19 4168 PVETKAHFDSSEPQLLWDCD ZNF165 [133-152] [165-184]  1 2846 EMELWMKAMLDAALVQTEPV PEPP2 20 4169 PILPPSLQTSYVFLGIVLAL 5T4 [255-274] [346-365]  1 2847 PAPCQYAHKLAFLVGQSIHR PIWIL1 20 4170 FESFCQFTHYRCSNHVYYAK ACRBP [829-848] [100-119]  1 2848 MRSVVGFVASINLTLTKWYS PIWIL2 20 4171 CDRRCLFQLETVAVTQMNKC ACTL8 [754-773] [193-212]  1 2849 PAPCHYAHKLAYLVGQSIHQ PIWIL3 20 4172 KMCDANYAGGVVLHPRTISL ADAM2 [850-869] [285-304]  1 2850 LNKQGMMMSIATKIAMQMTC PIWIL4 20 4173 CSQPRCIMHEGNPPITKFSN ADAM29 [582-601] [349-368]  1 2851 LCSIDWFMVTVHPFMLNNDV PLAC1 20 4174 TLHRNEYGIASILDSYQCTA AFP [29-48] [20-39]  1 2852 HLERLAYLHARLRELLCELG PRAME 20 4175 DILCPKAKRTSRFLSGIINF CDCA1 [456-475] [108-127]  1 2853 NASGAHALQPAAAILALLPA PSCA 20 4176 APPWEQDYRMMFPPPGQSYP CTAGE2 [84-103] [565-584]  1 2854 EKKIMHYMYQLCKSLDHIHR RAGE-1 20 4177 KGAKGTFHCDVCMFTSSRMS CTCFL [102-121] [251-270]  1 2855 PTGLINMAATPIPAMSARDL SAGE1 20 4178 PHCRDEMAAARGALKKNATM CTNNA2 [179-198] [200-219]  1 2856 KRCQHKIAEMVALMEKHKHQ SCP-1 20 4179 TKCNTLFVVDVQTSQITKIP DCAF12 [701-720] [107-126]  1 2857 QVPRTYAIMISRPAWLWGAE SCRN1 20 4180 KVCRDTLRDWCQQLGLSTNG DPPA2 [61-80] [94-113]  1 2858 YKLPLFIAFIFSTLIFSGFS SLCO6A1 20 4181 SKLAAKCLVMKAEMNGSKLG EpCAM [576-595] [60-79]  1 2859 EEAVMYYTRSISALPTVVAY SPAG1 20 4182 ERYMCSRFFIDFPHIEEQQK FAM46D [226-245] [259-278]  1 2860 TGKLGFSFVRITALMVSCNR SPAG9 20 4183 WASPQNFTSVCEELVNNVED GASZ [1138-1157] [392-411]  1 2861 VEHPQMTFGRLHRIIPKIMP SSX-1 20 4184 IDKYWREYILSLEELVNGMY Glypican- [94-113] 3 [292-311]  1 2862 EKIVYVYMKLNYEVMTKLGF SSX-4 20 4185 GTATLRLVKRQVPLDCVLYR gp100 [44-63] [460-479]  1 2863 EHPQMTFGRLQGIFPKITPE SSX-5 20 4186 HYGLYKKMIVFKPYQASQHD HDAC3 [95-114] [38-57]  1 2864 PHPGTVISHSVAMLILIGSL TAG-1 20 4187 GRQCVEHYRLLHRYCVFSHD JARID1B [1019-1038] [611-630]  1 2865 LPASTLSRLSNALLLRLECN TAG-2a 20 4188 TGAVGMACAISILLKDLADE LDHC [37-56] [28-47]  1 2866 YLPGYRYLNSWRPSLFYKIA TEKT5 20 4189 GASLDNFHFIGVSLGAHISG LIPI [40-59] [168-187]  1 2867 AMIGCRLMSGILAVGPMFVR TEX101 20 4190 LESLFRAVITKKVADLVGFL MAGE-A1 [187-206] [94-113]  1 2868 LTGATQMAYLGSLPVIGEKE TEX14 20 4191 AQIACSSPSVVASLPLDQSD MAGE-A10 [221-240] [87-106]  1 2869 TLYFYKFFLPTILSLSFFIL TMEM31 20 4192 LGDNQIVPKTGLLIIVLAII MAGE-A12 [132-151] [190-209]  1 2870 GFLEKEFYHKTNIKMRCEFL TRAG-3 20 4193 YLQLVFGIEVVEVVPISHLY MAGE-A2 [18-37] [157-176]  1 2871 APSRTLLLALPLPLSLLAAL TSP50 20 4194 IGHLYIFATCLGLSYDGLLG MAGE-A3 [366-385] [172-191]  1 2872 HLCKIMLFFRSNPYFQNKVI TSPY1 20 4195 IWKFMNVLGAYDGEEHLIYG MAGE-B1 197-216] [220-239]  1 2873 KGAATKMAAVTAPEAESAPA VCX 20 4196 CATEEKIWEFLNKMRIYDGK MAGE-B3 [53-72] [217-236]  1 2874 DVRDLNALLPAVPSLGGGGG WT1 20 4197 RLSKDAVKKKACTLAQFLQK MAGE-B6 [4-23] [189-208]  1 2875 SRQKKIRIQLRSQCATWKVI XAGE-1 20 4198 RYTGYFPVIFRKAREFIEIL MAGE-C1 [20-39]; [941-960] XAGE-1b [20-39]  1 2876 CKECGRAFNLNSHLIRHQRI ZNF165 20 4199 ARWSFRAYTSVLYFNPWMRI MORC1 [402-421] [233-252]  2 2877 PTSSASSFSSSAPFLASAVS 5T4 20 4200 QSGAGVPGWGIALLVLVCVL MUC-1 [34-53] [1151-1170]  2 2878 SVWLGASVVAHLSTYQSEWM ACTL8 20 4201 LVANFEKARRAHWIFLGCFL NLRP4 [336-355] [484-503]  2 2879 VFQLIGLTNAIFVSFNITII ADAM2 20 4202 QLNKRYWYICQDFTEYKYTH NR6A1 [205-224] [413-432]  2 2880 ETFMNKFIYEIARRHPFLYA AFP 20 4203 DQSAYVSAIRDCFPKLLRLD NXF2 [156-175] [338-357]  2 2881 SGQMVEHLMNSVMKLCVIIA AKAP-3 20 4204 TRKDCLAKHLKHMRRMYGTS NYD-TSPG [666-685] [154-173]  2 2882 AVLQWIAASQFNVPMLYFMG AKAP-4 20 4205 IDTSNSEAISSSSIPQFPIT PASD1 [776-795] [656-675]  2 2883 RCIIILVLQEPTAFRISVTS BAGE-2 20 4206 KELTPTSPDCLRYYNILFRR PIWIL3 [60-79] [212-231]  2 2884 SVTSSCFVQNTLTKLLKDRR BAGE-3 20 4207 LETWGLHFGSQISLTGRIVP PIWIL4 [76-95]; [431-450] BAGE-2 [76-95]  2 2885 MLAKKHFSYAWPFYNPVDVN BRDT 20 4208 VLPGLAYLATADMPAMSTRD SAGE1 [283-302] [366-385]  2 2886 CKVDGFTHLYTLILRPDLSY CALR3 20 4209 MIGYALGYVLGAPLVKVPEN SLCO6A1 [163-182] [275-294]  2 2887 CCHPSNFIIEAPGHMSDVEW CCDC62 20 4210 FVRITALMVSCNRLWVGTGN SPAG9 [515-534] [1145-1164]  2 2888 IRLEHFYMMPVNSEVMYPHL CDCA1 20 4211 KKLWDTFHVPVFTLVDADPH SPO11 [59-78] [262-281]  2 2889 NCYQNFLDYHRCLKTRTRRG COX6B2 20 4212 EDVPLAAKLVDLPCVIESLR TAF7L [31-50] [145-164]  2 2890 VGHYTQLVWYSTYQVGCGIA CRISP2 20 4213 GYVDYGNFEILSLMRLCPII TDRD1 [134-153] [575-594]  2 2891 PTAVRKRFFESIIKEAARCM CT45 20 4214 QDTLQLLVMTKCRLEHELAI TEKT5 [154-173] [437-456]  2 2892 HAAARNLWGNLPPLLLPQRL CT47 20 4215 AFCELQTYHDQLVELLEETK TEX15 [155-174] [1755-1774]  2 2893 MFVIISLHNCVVISFVLFLF CTAGE1 20 4216 IKLLRNIPRWTHLLALLRLI TPTE [1-20] [181-200]  2 2894 VRREKKFAVALSGLIEEKCK CTAGE2 20 4217 WVLTVAHCLIWRDVIYSVRV TSP50 [42-61] [147-166]  2 2895 HICHTRFTQSGTMKIHILQK CTCFL 20 4218 STPMFNDINIYDLFVWMHYY TYR [401-420] [163-182]  2 2896 HISDSFLETNVPLLVLIEAA CTNNA2 20 4219 PFMCAYPGCNKRYFKLSHLQ WT1 [387-406] [322-341]  2 2897 MLRLLRLALAFYGRTADPAE CXorf48 20 4220 HDGCERRLNLNSNEFTHQKS ZNF165 [1-20] [272-291]  2 2898 RWCPPPFFYRRRFVRGPRPP DBPC  1 4221 VESTPMIMENIQELIRSAQE ACRBP [222-241] [275-294]  2 2899 VLAFGLLLAAATATFAAAQE EpCAM  1 4222 LNWEGVQYLWSFVLENHRRE ACTL8 [6-25] [73-92]  2 2900 WDLMQNIMNDMPIYMYSVCN EPHA2  1 4223 DEVSFYANRLTNLVIAMARK AKAP-3 [52-71] [122-141]  2 2901 VPKQMMQMFGLGAISLILVC FMR1NB  1 4224 IDDLSFYVNRLSSLVIQMAH AKAP-4 [180-199] [214-233]  2 2902 ACGLYYKLHNINRPLTMKKE GATA-3  1 4225 RTKKELASALKSALSGHLET ANXA2 [341-360] [78-97]  2 2903 IQKLKSFISFYSALPGYICS Glypican-  1 4226 PSNINQFAAAYFQELTMYRG CABYR 3 [30-49] [392-411]  2 2904 LLVLMAVVLASLIYARRLMK gp100  1 4227 SPASELIAIQDSHSLGSSKS CCDC62 [603-622] [566-585]  2 2905 NDLQMSNFVNLKNITYLVLD HAGE  1 4228 EGKDPAFTALLTTQLQVQRE CRISP2 [377-396] [20-39]  2 2906 ASGFCYVNDIVLAILELLKY HDAC1  1 4229 FAVLFFLWRSFRSVRSRLYV cTAGE5 [147-166] [53-72]  2 2907 GAESGRYYCLNVPLRDGIDD HDAC3  1 4230 KKNATMLYTASQAFLRHPDV CTNNA2 [210-229] [214-233]  2 2908 TVTIRNISALSSGLYQCVAS IGFS11  1 4231 NEDNIYISNSIYFSIAIVSE CXorf48 [199-218] [122-141]  2 2909 YKLRYRYTLDDLYPMMNALK JARID1B  1 4232 SRVLHGYAAQQLPSLLKERE DCAF12 [730-749] [64-83]  2 2910 LHDGLRQVAGPGAAAAHLPR KAAG1  1 4233 NLLRGIDSLFSAPMDFRGLP DKKL1 [21-40] [63-82]  2 2911 GTGAVGMACAISILLKDLAD LDHC  1 4234 IAERQRVMAAQVALRRQQAQ DMRT1 [27-46] [108-127]  2 2912 STRKLYEKKLVQLLVSPPCA LEMD1  1 4235 KRDNRVAYMNPIAMARWRGP FAM133A [29-48] [3-22]  2 2913 DYFPEIFREASVCMQLLFGI MAGE-A11  1 4236 EHLEVKFMNPYNAVLTKKFQ FBXO39 [258-277] [90-109]  2 2914 FQDFFPVIFSKASEYLQLVF MAGE-A12  1 4237 ISDTKDYFMSKTLGIGRLKR FSIP1 [143-162] [515-534]  2 2915 PPQSPQGASALPTTISFTCW MAGE-A4  1 4238 MSWRGRSTYRPRPRRYVEPP GAGE-2 [62-81] [1-20]; GAGE-1 [1-20]; GAGE-8 [1-20]  2 2916 LKSPQGASAIPTAIDFTLWR MAGE-A5  1 4239 SRGKSTYYWPRPRRYVQPPE GAGE-3 [62-81] [4-23]  2 2917 FLWGPRAYAETSKMKVLEFL MAGE-B2  1 4240 WRGRSTYYWPRPRRYVQPPE GAGE-6 [273-292] [3-22]; GAGE-7 [3-22]  2 2918 PREDAHFIYGYPKKGHGHSY MART  1 4241 ALSRHMSSLSHISPFSHSSH GATA-3 [2-21] [396-415]  2 2919 KFRPGSVVVQLTLAFREGTI MUC-1  1 4242 DGGNKHFLRNQPLTFALQLH gp100 [1093-1112] [226-245]  2 2920 MVLPDVFIRCVVFCLTVVCW NA17-A  1 4243 KKVNFLDMSLDDIIIYKELE HOM-TES-85 [1-20] [21-40]  2 2921 QYIPHLFSYSGHSPLLPQQA NR6A1  1 4244 IQNHDIMHAIISPLRSANTV KU-CT-1 [224-243] [435-454]  2 2922 GQSQGSVLAFTRTFIATPGS NXF2  1 4245 PDSRLLQLHITMPFSSPMEA Lage-1 [509-528] [83-102]  2 2923 LLKEFTVSGNILTIRLTAAD NY-ESO-1  1 4246 QRNVAIMKSIIPAIVHYSPD LDHC [122-141] [111-130]  2 2924 EKDVTYSYGLGSCVKIESPC ODF1  1 4247 VKVLEYVIKVSARVRFFFPS MAGE-A1 [183-202] [277-296]  2 2925 PPTTGFMKHTPTKLRAPAYS 0DF3  1 4248 DPTSHSYVLVTSLNLSYDGI MAGE-A11 [33-52] [283-302]  2 2926 SNRIHTSAHVMSMGLLHFYK ODF4  1 4249 GREDSVFAHPRKLLMQDLVQ MAGE-A2 [121-140] [233-252]  2 2927 SLGAVVFSRVTNNVVLEAPF OIP5  1 4250 FPVIFSKASSSLQLVFGIEL MAGE-A3 [100-119] [147-166]  2 2928 DGPDTKRVCLRNEEQMKLPA PAGE1  1 4251 VNARVRIAYPSLREAALLEE MAGE-A4 [77-96] [294-313]  2 2929 GLTLWEMMTLSIPHINLSND PBK  1 4252 KKLLTQYFVQENYLEYRQVP MAGE-A6 [234-253] [243-262]  2 2930 NRKYAFKAAHPNMRTYYFCT PEPP2  1 4253 RAPEEAIWEALSVMGLYDGR MAGE-A8 [231- 250] [218-237]  2 2931 GKQQTVMAIATKIALQMNCK PIWIL1  1 4254 PAQLEFMFQEALKLKVAELV MAGE-A9 [592-611] [97-116]  2 2932 CLRYYNILFRRTFKLLDFEQ PIWIL3  1 4255 SSDPPRFQFLWGPRAYAETS MAGE-B2 [221-240] [265-284]  2 2933 YFERKLLFSADVSYKVLRNE PIWIL4  1 4256 LIMKTNMLVQFLMEMYKMKK MAGE-B3 [252-271] [111-130]  2 2934 FKFIGLMILLTSAFSAGSGQ PLAC1  1 4257 RPVSSFFSYTLASLLQSSHE MAGE-C1 [4-23] [777-796]  2 2935 RHSQTLKAMVQAWPFTCLPL PRAME  1 4258 ATVMASESLSVMSSNVSFSE MAGE-C2 [64-83] [354-373]  2 2936 PGSPRSWLLLCPLSHVLFRA PRSS55  1 4259 EIYNEYIYDLFVPVSSKFQK MPHOSPH1 [330-349] [277-296]  2 2937 MAGLALQPGTALLCYSCKAQ PSCA  1 4260 GVSFFFLSFHISNLQFNSSL MUC-1 [1-20] [1039-1058]  2 2938 QVRGGMVFELANSIVLPFDC PSMA  1 4261 EEAFSRASLVSVYNSYPYYP NKX3.1 [578-597] [202-221]  2 2939 AASDNVFSTVPPAFINMAAT SAGE1  1 4262 SLLRKKMLPEASLLIAIKPV NLRP4 [592-611] [263-282]  2 2940 EDANSCHSFQSAYLIVDRDE SCRN1  1 4263 IERLIYLYHKFHQLKVSNEE NR6A1 [145-164] [369-388]  2 2941 LWTWWINFLFAAVVAWCTLI SLCO6A1  1 4264 ADKDLYVAEALSTLESWRSR ODF2 [311-330] [428-447]  2 2942 QFIPSTMAAAAASGLSPLQL SOX-6  1 4265 NSPLPFQWRITHSFRWMAQV ODF4 [306-325] [63-82]  2 2943 KGIVLVALADGTLAIFHRGV SPAG9  1 4266 MGFLARLIYARRPMIYVESS PAGE1 [1010-1029] [1-20]  2 2944 MIITTWIVYILARKGVGLPF SPATA19  1 4267 GPDMEAFQQELALLKIEDEP PAGE2 [1-20] [65-84]  2 2945 DSILRAPYVTCQPFWRKEME SPO11  1 4268 RGDGQEAPDVVAFVAPGESQ PAGE4 [340-359] [12-31]  2 2946 FLKDHRISTFKNWPFLEGCA Survivin  1 4269 GTDVEAFQQELALLKIEDAP PAGE5 [13-32] [84-103]  2 2947 VTGYKMLYQNDLHLTPTLHL TAG-1  1 4270 KNTPGIYTSLVNYNLWIEKV PRSS55 [944-963] [279-298]  2 2948 ECNVVIIAHCNLEPLVSRDP TAG-2a  1 4271 SNPIVLRMMNDQLMFLERAF PSMA [54-73] [656-675]  2 2949 IPVWGLQLLLPLLLPSFIHF TEX101  1 4272 GSTGFSSRLAATQDLPFIHQ RCAS1 [229-248] [123-142]  2 2950 EPTFSFFSGPYMVMTNLVWN TEX14  1 4273 KDSITVFVSNLPYSMQEPDT SART3 [247-266] [701-720]  2 2951 GLPIILHLFALSTLYFYKFF TMEM31  1 4274 KLNQEYSQQFLTLFQQWDLD SCP3a [120-139] [120-139]  2 2952 KIKKIVHSIVSSFAFGLFGV TPTE  1 4275 TSELKTEGVSPYLMLIRLRK se57-1 [80-99] [316-335]  2 2953 IKMRCEFLACWPAFTVLGEA TRAG-3  1 4276 KERQLSTMITQLISLREQLL SOX-6 [30-49] [187-206]  2 2954 QNYSSNAYHMSSTMKPNTKC TSGA10  1 4277 PDNIPAFAAAYFESLLEKRE SP17 [651-670] [32-51]  2 2955 IWRDIDFAHEAPAFLPWHRL TYR  1 4278 KKMKTSESSTILVVRYRRNV SPAN-Xc [194-213] [40-59]  2 2956 ASSGQARMFPNAPYLPSCLE WT1  1 4279 TRIQFIRWSHTRIFQVPSEM SPATA19 [120-139] [112-131]  2 2957 KKIRIQLRSQCATWKVICKS XAGE-1c  1 4280 AEIQALTFLSSDYLSRVYLP SPO11 [102-121] [368-387]  3 2958 LRRLELASNHFLYLPRDVLA 5T4  1 4281 VERPQMTFGRLQGISPKIMP SSX-2 [212-231] [94-113]  3 2959 CDTDYIQYPNYCSFKSQQCL ACRBP  1 4282 QRPQMTFGRLQGIFPKIMPK SSX-3 [477-496] [95-114]  3 2960 WNEPQMVFPNIVNYLPCKEN ACTL8  1 4283 EFEETAKKVRRAIEQLAAMD Survivin [22-41] [123-142]  3 2961 RYIENIYHSKPMRWPFFLFI ADAM2  1 4284 LFLRSQEAAATVQLFQEEHR SYCE1 [674-693] [229-248]  3 2962 PRCIIILVLQEPTPFRISVT BAGE-3  1 4285 ESGQYRANEGTSSIVMEIQK TAF7L [59-78] [377-396]  3 2963 ECIEDFNTMFSNCYLYNKPG BRDT  1 4286 SSEVLEYMNQLSASLKETYA TDRD1 [93-112] [285-304]  3 2964 EACRETYMEFLWQYKSSADK CDCA1  1 4287 GKINQNYASIITEAFPKPKD TEX15 [132-151] [368-387]  3 2965 TRRGKSTQPCEYYFRVYHSL COX632  1 4288 VSRAAQMAVPSSRILQLSKP THEG [47-66] [255-274]  3 2966 NQDSLKYYYVCQYCPAGNNM CRISP2  1 4289 DLDLTYVTERIIAMSFPSSG TPTE [157-176] [236-255]  3 2967 ECYQFKFKYTNNGPLMDFIS CT46  1 4290 EELQKVQFEKVSALADLSST TSGA10 [113-132] [492-511]  3 2968 VVARRYPASGIHFVLLDMVH CT47  1 4291 HNRESYMVPFIPLYRNGDFF TYR [109-128] [420-439]  3 2969 WELVIRAAVAGFFAVLFLWR CTAGE2  1 4292 QTPGINLDLGSGVKVKIIPK XAGE-1c [12-31] [125-144]; XAGE-1 [46-65]; XAGE-1b [46-65]  3 2970 CNDCNMAFVTSGELVAHRRY CTCFL  1 4293 SRQKKIRIQLRSQVLGREMR XAGE-1d [315-334] [20-39]  3 2971 SSILCALIVFWKYRRFQRNT CXorf61  1 4294 MSWRGRSTYRPRPRRSLQPP XAGE-2 [9-28] [1-20]  3 2972 ADKPVLAIQVLGTVKWFNVR DBPC  1 4295 MIWRGRSTYRPRPRRSVPPP XAGE-3 [85-104] [1-20]  3 2973 VLLLLLSTLVIPSAAAPIHD DKKL1  2 4296 SHKTPFVSPLLASQSLSIGN ACRBP [16-35] [399-418]  3 2974 CKKCNLIAERQRVMAAQVAL DMRT1  2 4297 RIVEIVVVIDNYLYIRYERN ADAM29 [102-121] [198-217]  3 2975 TNTVEVITSAPGAMLASWAR DPPA2  2 4298 STPPSAYGSVKAYTNFDAER ANXA2 [172-191] [18-37]  3 2976 MNDMPIYMYSVCNVMSGDQD EPHA2  2 4299 QLLQARLMKEESPVVSWRLE BAGE-1 [59-78] [13-32]; BAGE-2 [13-32]; BAGE-3 [13-32]; BAGE-5 [13-32]  3 2977 IWILLFVCYYLSYYLCSGSS FMR1NB  2 4300 AKYSSVYMEAEATALLSDTS CABYR [76-95] [372-391]  3 2978 YYWPRPRRYVQPPEMIGPMR GAGE-7  2 4301 ENHPKSMTMMPALFKENRND CAGE1 [9-28] [756-775]  3 2979 HHPGLSHSYMDAAQYPLPEE GATA-3  2 4302 ATAQLQRTPMSALVFPNKIS CT46 [27-46] [2-21]  3 2980 GECCKYSYKGLRSVCVYGGG HAGE  2 4303 ALKKLIHAAKLNASLKTLEG cTAGE5 [334-353] [312-331]; CTAGE2 [282-301]  3 2981 ISKVMEMYQPSAVVLQCGAD HDAC2  2 4304 NTGEMSSNSTALALVRPSSS CXorf61 [246-265] [27-46]  3 2982 KPHRLALTHSLVLHYGLYKK HDAC3  2 4305 GQGSLLFYDIRAQRFLEERL DCAF12 [25-44] [358-377]  3 2983 AVLPCTFTTSAALINLNVIW IGFS11  2 4306 TELHPRVAFWIIKLPARRSH DKKL1 [40-59] [161-180]  3 2984 QDMDCVYYNWQYLLCSWKPG IL13RA2  2 4307 SDSTYYSSFYQPSLFPYYNN DMRT1 [141-160] [205-224]  3 2985 QCAGEFVITFPRAYHSGFNQ JARID1B  2 4308 GKKIEVYLRLHRHAYPEQRQ DPPA2 [573-592] [113-132]  3 2986 GVPVAVHKHALHDGLRQVAG KAAG1  2 4309 EKEKDVRSLSKKRKKSYPDD FAM133A [11-30] [168-187]  3 2987 PVSGPFLVKTGYAFVDCPDE KOC1  2 4310 RRQFEFSVDSFQIVLDPMLD FAM46D [28-47] [166-185]  3 2988 PDFSMYVYEVTKSILPITNI KU-CT-1  2 4311 EVMARQLYAVNARLRALEEQ FATE1 [721-740] [135-154]  3 2989 LHITMPFSSPMEAELVRRIL Lage-1  2 4312 NLKVNFFFERIMKYERLARI FBXO39 [90-109] [282-301]  3 2990 PRIETILMMYTRNNLNCAEP LIPI  2 4313 KLQELSAASPTISSFSPRLE FSIP1 [60-79] [326-345]  3 2991 DPACYEFLWGPRALVETSYV MAGE-A3  2 4314 GWESGLVAMESAFHLEKNVN FTHL17 [265-284] [93-112]  3 2992 PDPESVFRAALSKKVADLIH MAGE-A5  2 4315 EEMRSHYVAQTGILWLLMNN GAGE-1 [99-118] [109-128]  3 2993 AALSRKVAKLVHFLLLKYRA MAGE-A6  2 4316 MNLSRGKSTYYWPRPRRYVQ GAGE-3 [107-126] [1-20]  3 2994 DPAGHSYILVTALGLSCDSM MAGE-A9  2 4317 MSWRGRSTYYWPRPRRYVQP GAGE-6 [169-188] [1-20]; GAGE-7 [1-20]  3 2995 ALPKSGLLMSLLVVIFMNGN MAGE-B6  2 4318 EKFKKAMTIGDVSLVQELLD GASZ [281-300] [48-67]  3 2996 KVVEFLAMLKNTVPITFPSS MAGE-C1  2 4319 KPHRIRMTHNLLLNYGLYRK HDAC2 [1083-1102] [32-51]; HDAC1 [31-50]  3 2997 AGREHFVYGEPRELLTKVWV MAGE-C2  2 4320 MASFRKLTLSEKVPPNHPSR HOM-TES-85 [260-279] [1-20]  3 2998 IGCWYCRRANGYRALMDKSL MART1  2 4321 PIRSSYFTFQLQNIVKPLPP IL13RA2 [43-62] [222-241]  3 2999 AYTSVLYFNPWMRIFIQAKR MORC1  2 4322 YENDIASMNLQAHLIPGLNL KOC1 [239-258] [351-370]  3 3000 LVALAIVYLIALAVCQCRRK MUC-1  2 4323 ATVLTNMAMQEPLRLNIQNH KU-CT-1 [1170-1189] [419-438]  3 3001 GSYRKWMCFSESQVQPTQKQ NA17-A  2 4324 GAVLKDFTVSGNLLFMSVRD Lage-1 [32-51] [120-139]  3 3002 SLVSVYNSYPYYPYLYCVGS NKX3.1  2 4325 AQFYNDFVNISSIGLTYFQS LIPI [209-228] [409-428]  3 3003 ESSYVFLHVCIQEFCAALFY NLRP4  2 4326 VSARVRFFFPSLREAALREE MAGE-A1 [445-464] [286-305]  3 3004 AFREQYMGMSVPPHYQYIPH NR6A1  2 4327 ESVIRNYEDHFPLLFSEASE MAGE-A10 [209-228] [162-181]  3 3005 HTPHKTLMPYASLFQSHSCK NYD-TSPG  2 4328 PDLESEFQAAISRKMVELVH MAGE-A2 [515-534] [99-118]  3 3006 LQQLSLLMWITQCFLPVFLA NY-ESO-1  2 4329 VVGNWQYFFPVIFSKASSSL MAGE-A3 [153-172] [139-158]  3 3007 CDLHPYPYCLCYSKRSRSCG ODF1  2 4330 VVGNWQYFFPVIFSKASDSL MAGE-A6 [47-66] [139-158]  3 3008 RGPIMALYSSPGPKYLIPPT ODF3  2 4331 DGREHSVYWKLRKLLTQEWV MAGE-A8 [16-35] [235-254]  3 3009 QCHAVLADSVHLAWDLSRSL OIP5  2 4332 AHAETSYEKVINYLVMLNAR MAGE-A9 [82-101] [276-295]  3 3010 QEDRLYLVGNVCILRTQLLQ PASD1  2 4333 TEEEIWKFMNVLGAYDGEEH MAGE-B1 [163-182] [216-235]  3 3011 GFTTSILQYENSIMLCTDVS PIWIL1  2 4334 TNKKKVSFSSPLILGATIQK MAGE-B3 [251-270] [33-52]  3 3012 CIPFYNVVFRRVMKLLDMKL PIWIL2  2 4335 VAARRGTTAMTSAYSRATSS MAGE-B4 [319-338] [321-340]  3 3013 NHVQPHAYQFTYRVTECGIR PLAC1  2 4336 PQILNRTSQHLVVAFGVELK MAGE-B6 [64-83] [234-253]  3 3014 LQHLIGLSNLTHVLYPVPLE PRAME  2 4337 NPASSFFSSALLSIFQSSPE MAGE-C1 [427-446] [130-149]  3 3015 CWTARIRAVGLLTVISKGCS PSCA  2 4338 SSASSTLYLVFSPSSFSTSS MAGE-C2 [39-58] [40-59]  3 3016 SAGCVFYEIASLQPLFPGVN RAGE-1  2 4339 RSQAGMFIYSNNRLIKMHEK MORC1 [187-206] [363-382]  3 3017 MAITQFRLFKFCTCLATVFS RCAS1  2 4340 YEQANLNMANSIKFSVWVSF MPHOSPH1 [1-20] [256-275]  3 3018 PNNVLSTVQPVIIYLTATGI SAGE1  2 4341 PQKRSRAAFSHTQVIELERK NKX3.1 [312-331] [123-142]  3 3019 CKALMRFIMVTSVISLILLV SLCO6A1  2 4342 GINNVSFSGQSVLLFEVLFY NLRP4 [451-470] [673-692]  3 3020 RALELHPFSMKPLLRRAMAY SPAG1  2 4343 KRASQYSGQLKVLIAENTML NY-BR-1 [512-531] [1103-1122]  3 3021 SAQKFSLILKILSMIYKLVQ SPO11  2 4344 WTLSRFFSYLRSWDVDDLLL NYD-TSPG [107-126] [322-341]  3 3022 TSEKINMISGVLQRYCRFGS SSX-3  2 4345 GDGPYSTFLTSSPIRSRSPP ODF2 [147-166] [809-828]  3 3023 MGAPTLPPAWQPFLKDHRIS Survivin  2 4346 NDQESSQPVGSVIVQEPTEE PAGE2 [1-20] [16-35]  3 3024 DKKTFYKTADISQMLVCTAD TAF7L  2 4347 MSARVRSRSRGRGDGQEAPD PAGE4 [167-186] [1-20]  3 3025 LSNRLLLRLECNVVIIAHCN TAG-2a  2 4348 RGNDQESSQPVGPVIVQQPT PAGE5 [45-64] [33-52]  3 3026 ECYQPYYLPGYRYLNSWRPS TEKT5  2 4349 NHPVRFLQAQPIVPVQRAAE PASD1 [34-53] [599-618]  3 3027 YWTERFLEDTTLTITVPAVS THEG  2 4350 LVGRNFYDPTSAMVLQQHRL PIWIL2 [172-191] [338-357]  3 3028 PYRLPALFELYPEFLLVFKE TMEM31  2 4351 TKFKQSRAMNFDFPFKKGSG RAGE-1 [84-103] [227-246]  3 3029 DVKVQFFYSNLPTYYDNCSF TPTE  2 4352 QLEPDYFKDMTPTIRKTQKI RCAS1 [475-494] [89-108]  3 3030 ICAGTIIASQWVLTVAHCLI TSP50  2 4353 KELEELRAAFTRALEYLKQE SART3 [137-156] [440-459]  3 3031 LFVWMHYYVSMDALLGGSEI TYR  2 4354 NNNIEKMITAFEELRVQAEN SCP-1 [175-194] [215-234]  3 3032 GCNKRYFKLSHLQMHSRKHT WT1  2 4355 METQQQEIASVRKSLQSMLF SCP3a [329-348] [217-236]  3 3033 VICKSCISQTPGINLDLGSG XAGE-1c  2 4356 EISILQEQISHLQFVIHSQH se57-1 [117-136] [235-254]  3 3034 QILELLVLEQFLTILPGDLQ ZNF165  2 4357 KEEVAAVKIQAAFRGHIARE SP17 [87-106] [113-132]  4 3035 HYRCSNHVYYAKRVLCSQPV ACRBP  2 4358 EKDPSLVYQHLLYLSKAERF SPAG1 [108-127] [863-882]  4 3036 HVPSVLLADQLQMSLYASGL ACTL8  2 4359 NPLQMEEEEFMEIMVEIPAK SPAN-Xc [123-142] [78-97]  4 3037 CAIVTFMNKTLGTFSIAVAH ADAM29  2 4360 EKISYVYMKRNYKAMTKLGF SSX-1 [313-332] [44-63]  4 3038 LNEELDFLVTSYEEIIECAD CAGE1  2 4361 EWEKMKASEKIFYVYMKRKY SSX-2 [697-716] [36-55]  4 3039 MARALVQLWAICMLRVALAT CALR3  2 4362 EKIVYVYMKRKYEAMTKLGF SSX-3 [1-20] [44-63]  4 3040 EVMYPHLMEGFLPFSNLVTH CDCA1  2 4363 VERPQMTFGSLQRIFPKIMP SSX-4 [72-91] [94-113]  4 3041 RVYHSLCPISWVESWNEQIK COX6B2  2 4364 EKIIYVYMKRKYEAMTKLGF SSX-5 [61-80] [44-63]  4 3042 SSDPTSWSSAIQSWYDEILD CRISP2  2 4365 EPRVEVLINRINEVQQAKKK SYCE1 [101-120] [50-69]  4 3043 DSPSYQKRQRMALLARKQGA CT45  2 4366 NLTLKNHFQSVLEQLELQEK TAF7L [23-42] [424-443]  4 3044 VKRLLAVSVSCITYLRGIFP CT46  2 4367 WAERIMFSDLRSLQLKKTME TDRD1 [30-49] [246-265]  4 3045 VISFVLFLFGGNNFIQNFYL CTAGE1  2 4368 TLQEIFQAENTIMLLERSIM TEKT5 [12-31] [363-382]  4 3046 SHPYGFPWELVIRAAVAGFF CTAGE2  2 4369 TLVELQMMMETIQFIENKKR TEX15 [5-24] [1689-1708]  4 3047 RPDSNLYGFPWELVICAAVV cTAGE5  2 4370 VTKKVVASPRIISLAKPKVR THEG [31-50] [326-345]  4 3048 SPPAPARRHLLVLLLLLSTL DKKL1  2 4371 VIMHSRYRAQRFWSWVGQAN TSP50 [5-24] [186-205]  4 3049 SQDSGLVSLSSSSPISNKST DMRT1  2 4372 DEDEDMLSYMVSLEVGEEKH TSPY1 [329-348] [175-194]  4 3050 TSAPGAMLASWARIAARAVQ DPPA2  2 4373 VAKKGKAVARGARGKKGAAT VCX [179-198] [38-57]  4 3051 ECVCENYKLAVNCFVNNNRQ EpCAM  2 4374 KKKNQQLKVGILHLGSRQKK XAGE-1 [26-45] [5-24]; XAGE-1b [5-24]; XAGE-1d [5-24]; XAGE-1c [84-103]  4 3052 ESTVCLMSYERRQILHLITM FAM46D  2 4375 PRRSLQPPELIGAMLEPTDE XAGE-2 [308-327] [13-32]  4 3053 SHYVAQTGILWLLMNNCFLN GAGE-1  2 4376 KSFKSPKLAKHAAVFSGDKT ZNF165 [113-132] [324-343]  4 3054 LLKERDITLRHLLTMREDEF GASZ  3 4377 IKVKKLLFSKHLPVFTYTDQ ADAM29 [294-313] [67-86]  4 3055 SHISPFSHSSHMLTTPTPMH GATA-3  3 4378 SGEKNIFLASFVHEYSRRHP AFP [405-424] [344-363]  4 3056 ATWPHSVHRLAQSYLKEPMI HAGE  3 4379 SEGIMTYANSVVSDMMVSIM AKAP-3 [428-447] [282-301]  4 3057 NVARCWTYETAVALDCEIPN HDAC2  3 4380 DQVNIDYLMNRPQNLRLEMT AKAP-4 [308-327] [161-180]  4 3058 NVARCWTYETSLLVEEAISE HDAC3  3 4381 RDKVLIRIMVSRSEVDMLKI ANXA2 [302-321] [284-303]  4 3059 RQQSKAHRHRHARGYSRCRS HOM-TES-85  3 4382 QARLMKEESPVVSWRLEPED BAGE-1 [62-81] [16-35]; BAGE-5 [16-35]; BAGE-2 [16-35]; BAGE-3 [16-35]  4 3060 APLLLLSLHGVAASLEVSES IGFS11  3 4383 QADIEVMSTVHISSVYNDVP CABYR [9-28] [282-301]  4 3061 LAIGCLYTFLISTTFGCTSS IL13RA2  3 4384 SRLEKLLTQVRNLQFMSENE CAGE1 [6-25] [507-526]  4 3062 AVHKHALHDGLRQVAGPGAA KAAG1  3 4385 QTTQNGRFYAISARFKPFSN CALR3 [15-34] [67-86]  4 3063 HVKKGIFYHRALLFKALADR KU-CT-1  3 4386 TVFGEKSVITLSSIFTKDLV CCDC62 [789-808] [385-404]  4 3064 WREEGFPVGLKLAVLGIFII LEMD1  3 4387 GQKYEKIFEMLEGVQGPTAV CT45 [147-166] [138-157]  4 3065 PEEVIWEALNMMGLYDGMEH MAGE-A10  3 4388 GNNFIQNFYLPQNYIDQFLL CTAGE1 [242-261] [22-41]  4 3066 KIIDLVHLLLRKYRVKGLIT MAGE-A11  3 4389 TERLLKMKDWAAMLGEDITD cTAGE5 [225-244] [268-287]  4 3067 PACYEFLWGPRALVETSYVK MAGE-A12  3 4390 SVKRGTMVRAARALLSAVTR CTNNA2 [266-285] [117-136]  4 3068 DPIGHLYIFATCLGLSYDGL MAGE-A3  3 4391 RNGVIDYTIFFTLDSVKLPD CXorf48 [170-189] [188-207]  4 3069 PACYEFLWGPRALIETSYVK MAGE-A6  3 4392 VKRSLVYYLKNREVALQNET DCAF12 [266-285]; [42-61] MAGE-A2 [266-285]  4 3070 RVQAAAMLNDGSSAMGRKCS MAGE-B3  3 4393 PGQTLIYYVDEKAPEFSMQG EpCAM [317-336] [244-263]  4 3071 KCVRREYKPYFPQILNRTSQ MAGE-B6  3 4394 NRVAYMNPIAMARWRGPTQS FAM133A [223-242] [6-25]  4 3072 HSYTTAEEAAGIGILTVILG MART1  3 4395 KNLELKFVSSLRRQFEFSVD FAM46D [19-38] [155-174]  4 3073 GKGKICMIVNISQCYLAYDE MPHOSPH1  3 4396 GENQEHLVIAEMMELGSRSR FATE1 [446-465] [26-45]  4 3074 WSDNKIFRDRFLYTFYFCCR NLRP4  3 4397 SPQFKKTMSTFHNLVSLNLN FBXO39 [172-191] [213-232]  4 3075 RFTPVDFHYVRNRACFFVQD NXF2  3 4398 RPGSRSSNASLEVLSTEPGS FSIP1 [151-170] [21-40]  4 3076 ILSVVAKLLSHGAVIEVHNK NY-BR-1  3 4399 DDVALENFFRYFLRLSDDKM FTHL17 [95-114] [45-64]  4 3077 AEDWNLYWRTSSFRMTEHNS NYD-TSPG  3 4400 EKDHIFSSYTAFGDLEVFLH GASZ [118-137] [265-284]  4 3078 AADHRQLQLSISSCLQQLSL NY-ESO-1  3 4401 EQLLQSASMELKFLIIQNAA Glypican- [139-158] 3 [90-109]  4 3079 LGSKKYSYMNICKEFSLPPC ODF1  3 4402 TLIGANASFSIALNFPGSQK gp100 [161-180] [76-95]  4 3080 ENGKVTFIFSTLMLFPINIW ODF4  3 4403 ATQRDLIATQRDLIVTQRDL HOM-TES-85 [148-167] [261-280]  4 3081 GDGPDVREGIMPTFDLTKVL PAGE2  3 4404 WAIGLSVMDLVGSILKNLRR LDHC [85-104] [250-269]  4 3082 NEFPVVFSGLFSSHLCADFA PASD1  3 4405 SEELNIILQGNIILSTEKSK LEMD1 [139-158] [67-86]  4 3083 ILTIPMHFWALFYPKRAMDQ PIWIL2  3 4406 RALAETSYVKVLEYVIKVSA MAGE-A1 [598-617] [269-288]  4 3084 YVTSVLQYENSITLCADVSH PIWIL3  3 4407 DGMEHLIYGEPRKLLTQDWV MAGE-A10 [267-286] [257-276]  4 3085 PAPCQYAHKLTFLVAQSIHK PIWIL4  3 4408 YAGREHFLFGEPKRLLTQNW MAGE-A11 [820-839] [344-363]  4 3086 MVTVHPFMLNNDVCVHFHEL PLAC1  3 4409 PDLETSFQVALSRKMAELVH MAGE-A12 [36-55] [99-118]  4 3087 EKEEQYIAQFTSQFLSLQCL PRAME  3 4410 PQGASSFSTTINYTLWRQSD MAGE-A2 [279-298] [65-84]  4 3088 SILNKWWILTAAHCLYSEEL PRSS55  3 4411 ETSYVKVLEHVVRVNARVRI MAGE-A4 [96-115] [281-300]; MAGE-A8 [283-302]  4 3089 LQPAAAILALLPALGLLLWG PSCA  3 4412 EALDEKVAELVRFLLRKYQI MAGE-A8 [91-110] [110-129]  4 3090 VDCTPLMYSLVHNLTKELKS PSMA  3 4413 NSDPPRYQFLWGPRAYAETT MAGE-B1 [464-483] [262-281]  4 3091 ALICELMDMNIYELIRGRRY RAGE-1  3 4414 FPEILKKASEGLSVVFGLEL MAGE-B2 [79-98] [149-168]  4 3092 FKFCTCLATVFSFLKRLICR RCAS1  3 4415 YDGKKHFIFGEPRKLITQDL MAGE-B3 [9-28] [233-252]  4 3093 GDPSCVIMQNWARIEARLCN SART3  3 4416 SSSVLRDTASSSLAFGIPQE MAGE-B4 [468-487] [42-61]  4 3094 LLVFIIFVRCNPVQFAGINE SLCO6A1  3 4417 ADIKKQAEIAHLYIASLPDP MPHOSPH1 [468-487] [687-706]  4 3095 NKECAIYTNRALCYLKLCQF SPAG1  3 4418 ASPQETQSAFSIPVSTLSSS NXF2 [654-673] [544-563]  4 3096 IRWSHTRIFQVPSEMTEDIM SPATA19  3 4419 HHIHEQIMEYIRKLSKNHQN NY-BR-1 [117-136] [195-214]  4 3097 SWENIKFEDSVGLQMVSHCT SPO11  3 4420 STNRSMQNYVQFLKSSYANV 0DF2 [77-96] [788-807]  4 3098 AMTKLGFKVTLPPFMCNKQA SSX-1  3 4421 LGQDGRLLSSTLSLSSNRSL 0DF4 [57-76] [39-58]  4 3099 AMTKLGFKATLPPFMCNKRA SSX-2  3 4422 QAVPAFQGPDMEAFQQELAL PAGE2 [57-76] [58-77]  4 3100 AMTKLGFKATLPPFMRNKRV SSX-5  3 4423 EDPKDRPSAAHIVEALETDV PBK [57-76] [303-322]  4 3101 KHSSGCAFLSVKKQFEELTL Survivin  3 4424 GWEEAYTFEGARYYINHNER PEPP2 [79-98] [61-80]  4 3102 KAEELLAAAAQRHQQLQQKC SYCE1  3 4425 QKSIAGFVASTNAELTKWYS PIWIL3 [249-268] [663-682]  4 3103 PASASLFQDTCAGCASLLHG TAG-2a  3 4426 YIPDLASRALRIALLYSHSE PIWIL4 [74-93] [130-149]  4 3104 WYRASVLAYASEESVLVGYV TDRD1  3 4427 DFKRANMDNDIALLLLASPI PRSS55 [558-577] [147-166]  4 3105 LRPPTILPTLRSALFSRYSP TEKT5  3 4428 QSGAAVVHEIVRSFGTLKKE PSMA [72-91] [389-408]  4 3106 VEVKGCTAMIGCRLMSGILA TEX101  3 4429 KNPDFKVFRYSTSLEKHKLF SART3 [180-199] [785-804]  4 3107 IYSFGFGKAMPWFQFYLTGA TEX14  3 4430 ASLEIELSNLKAELLSVKKQ SCP-1 [205-224] [747-766]  4 3108 CGKGYAWISPCKMSLHFCLC THEG  3 4431 AKRKRLEMYTKASLKTSNQK SCP3a [148-167] [87-106]  4 3109 WPTEWIFNPYRLPALFELYP TMEM31  3 4432 DSEFFLTTASGVSVLPQNRS SCRN1 [76-95] [268-287]  4 3110 LFIKHFIIYSIPRYVRDLKI TPTE  3 4433 MEDNSALYESTSAHIIEETE se57-1 [414-433] [16-35]  4 3111 NGQALALPAPSRTLLLALPL TSP50  3 4434 SEPHIKRPMNAFMVWAKDER SOX-6 [358-377] [617-636]  4 3112 LLGAAMVGAVLTALLAGLVS TYR  3 4435 SSEEDKEKEEVAAVKIQAAF SP17 [478-497] [106-125]  4 3113 EEQCLSAFTVHFSGQFTGTA WT1  3 4436 REEAQKMSSLLPTMWLGAQN SPAG9 [85-104] [959-978]  4 3114 WKVICKSCISQTPGINLDLG XAGE-1  3 4437 ESSTILVVRYRRNVKRTSPE SPAN-Xc [36-55]; [46-65] XAGE-1b [36-55]  4 3115 LHLGSRQKKIRIQLRSQCAT XAGE-1c  3 4438 KGVGLPFLPITSSDIDVVES SPATA19 [95-114] [14-33]  4 3116 CEGGTDVKGKILPKAEHFKM XAGE-2  3 4439 WKKMKYSEKISYVYMKRNYK SSX-1 [82-101] [37-56]  4 3117 SECGKTFRVSSHLIRHFRIH ZNF165  3 4440 EKIFYVYMKRKYEAMTKLGF SSX-2 [431-450] [44-63]  5 3118 PTEYERFFALLTPTWKAETT ACRBP  3 4441 EWEKMKSSEKIVYVYMKLNY SSX-4 [40-59] [36-55]  5 3119 KMLEILFELLHVPSVLLADQ ACTL8  3 4442 EWEKMKASEKIIYVYMKRKY SSX-5 [113-132] [36-55]  5 3120 ESLAVILAQLLSLSMGITYD ADAM2  3 4443 KNKQRQLRLAFEEQLEDLMG SYCE1 [305-324] [148-167]  5 3121 NITPRMQHDTSHLFTTLGLR ADAM29  3 4444 GADAQYFVYSNESVRPYTPF TAG-1 [276-295] [765-784]  5 3122 EPTAFRISVTSSCFVQNTLT BAGE-2  3 4445 GDFYVQLYSSEVLEYMNQLS TDRD1 [69-88] [277-296]  5 3123 EPTPFRISVTSSCFVQNTLT BAGE-3  3 4446 LSQFWEFSETTASTVSTTLH TEX101 [69-88] [120-139]  5 3124 PSQNQIRNCYQNFLDYHRCL COX6B2  3 4447 KSDIYSFSMIMQEILTDDIP TEX14 [24-43] [436-455]  5 3125 MALLPVLFLVTVLLPSLPAE CRISP2  3 4448 LKKSKYFISTYIDFVPYIAS TEX15 [1-20] [2172-2191]  5 3126 TQLVKWMLGCYDALQKKYLR CT46  3 4449 DQVDWSRLLRDAGLVKMSRK TRAG-3 [76-95] [52-71]  5 3127 MVHSLLHRLSHNDHILIENR CT47  3 4450 MANERISMQNLEALLVANRD TSGA10 [126-145] [557-576]  5 3128 LTSFPTFTSVGVLIVLVLCS CTAGE1  3 4451 LVNITEYRASHSTPIEWYPD TSPY1 [41-60] [221-240]  5 3129 RYCSAVFHERYALIQHQKTH CTCFL  3 4452 AVRRGRRGKKGAATKMAAVT VCX [461-480] [44-63]  5 3130 AKNLMNAVVLTVKASYVAST CTNNA2  3 4453 QLKVGILHLGSRQKKIRIQL XAGE-1d [869-888] [10-29]; XAGE-1 [10-29]; XAGE-1b [10-29]; XAGE-1c [89-108]  5 3131 VMVESIQFCFIWRAISITPV CXorf48  3 4454 TPDQKREDDQGAAEIQVPDL XAGE-2 [220-239] [47-66]  5 3132 MSEVEAAAGATAVPAATVPA DBPC  4 4455 EVRAGAFEHLPSLRQLDLSH 5T4 [1-20] [132-151]  5 3133 HAMSSQYRMHSYYPPPSYLG DMRT1  4 4456 PHNFRVYSYSGTGIMKPLDQ ADAM2 [282-301] [67-86]  5 3134 AVVAGIVVLVISRKKRMAKY EpCAM  4 4457 QKLGEYYLQNAFLVAYTKKA AFP [278-297] [420-439]  5 3135 AARACFALLWGCALAAAAAA EPHA2  4 4458 DLRSVFFNFIRNLLSETIFK AKAP-3 [5-24] [589-608]  5 3136 GSVASYILASHNGISYKDLD FAM46D  4 4459 LDSQKMDMSNIVLMLIQKLL AKAP-4 [65-84] [619-638]  5 3137 EQGATWRHRETLIIAVLVSA FATE1  4 4460 QNKPLYFADRLYDSMKGKGT ANXA2 [153-172] [264-283]  5 3138 SCRKLFYFKIWAFLDVSFVE FBXO39  4 4461 TALDVHFVSTLEPLSNAVKR BAGE-2 [364-383] [37-56]; BAGE-3 [37-56]  5 3139 LEALLNFFFPTTCNLRENQV FMR1NB  4 4462 SEILKEMLAKKHFSYAWPFY BRDT [122-141] [277-296]  5 3140 AAINSHITLELYTSYLYLSM FTHL17  4 4463 AYFQELTMYRGNTTMDIKDL CABYR [19-38] [39-58]  5 3141 GPVTAQVVLQAAIPLTSCGS gp100  4 4464 NSPTSLLIYKDAPAFNEKAS CCDC62 [284-303] [600-619]  5 3142 NVARCWTYETAVALDTEIPN HDAC1  4 4465 EEGNEAANFDLAVVARRYPA CT47 [307-326] [97-116]  5 3143 ASGFCYVNDIVIGILELLKY HDAC3  4 4466 SEAVELQDMSLLSIQQQEGV CTCFL [141-160] [89-108]  5 3144 KPGIGVLLDTNYNLFYWYEG IL13RA2  4 4467 SSDSSMLDSATSLIQAAKNL CTNNA2 [158-177] [853-872]  5 3145 LDLLKSEYPVIQLLALKTLG KU-CT-1  4 4468 SNSIYFSIAIVSEDFVPYKG CXorf48 [197-216] [129-148]  5 3146 AQGDGCRGVAFNVMFSAPHI Lage-1  4 4469 PHSIARQKRILVNLSMVENK CXorf61 [191-210] [71-90]  5 3147 CTYKIQRLMLKSLTYPERPP LIPI  4 4470 DTKEDVFVHQTAIKRNNPRK DBPC [436-455] [114-133]  5 3148 GLVCVQAATSSSSPLVLGTL MAGE-A1  4 4471 GSEWSVYAVGSQAHVSFLDP DCAF12 [24-43] [305-324]  5 3149 AAISRKMVELVHFLLLKYRA MAGE-A2  4 4472 GIMGQFSHHNIIRLEGVISK EPHA2 [107-126] [665-684]  5 3150 KTGLLIIVLGTIAMEGDSAS MAGE-A4  4 4473 RGPTQSVGPTIQDYLNRPRP FAM133A [199-218] [20-39]  5 3151 GGASSSISVYYTLWSQFDEG MAGE-A9  4 4474 SAKRVWNMTATRPKKMGSQL FATE1 [63-82] [63-82]  5 3152 SWDFPRRKLLMPLLGVIFLN MAGE-B2  4 4475 WRNSIRSSFISSLSFFLKKM FBXO39 [195-214] [141-160]  5 3153 PGLYPHLYEDALIDEVERAL MAGE-B6  4 4476 RESLKMRVSKPFGMLMLSIW FMR1NB [384-403] [58-77]  5 3154 GIGILTVILGVLLLIGCWYC MART1  4 4477 EEEDTFSSVFHTQIPPEEYE FSIP1 [29-48] [191-210]  5 3155 NSYPYYPYLYCVGSWSPAFW NKX3.1  4 4478 LSMAFYFNRDDVALENFFRY FTHL17 [215-234] [36-55]  5 3156 AIFYCLFEMQDPAFVKQAVN NLRP4  4 4479 SMELKFLIIQNAAVFQEAFE Glypican- [552-571] 3 [97-116]  5 3157 KDYTCLLSSTWQELILLSSL NR6A1  4 4480 AHSSSAFTITDQVPFSVSVS gp100 [314-333] [201-220  5 3158 IDIILNRRNCMAATLKIIER NXF2  4 4481 GAGKGKYYAVNYPLRDGIDD HDAC1 [248-267] [215-234]  5 3159 MYGTSLYQFIPLTFVMPNDY NYD-TSPG  4 4482 RGHYERILNPYNLFLSGDSL JARID1B [169-188] [172-191]  5 3160 KRELAKLARTTNRILASSCC ODF1  4 4483 QHIKQLSRFAGASIKIAPAE KOC1 [102-121] [426-445]  5 3161 SSPGPKYLIPPTTGFMKHTP ODF3  4 4484 AELVRRILSRDAAPLPRPGA Lage-1 [24-43] [102-121]  5 3162 THSFRWMAQVLASELSLVAF ODF4  4 4485 NLDSARFRYLIGEKLGVHPT LDHC [73-92] [164-183]  5 3163 LRGHFCLSSDKMVCYLLKTK OIP5  4 4486 PDKTMMDGSFSFKLLNQLGM LIPI [158-177] [367-386]  5 3164 GNVCILRTQLLQQLYTSKAV PASD1  4 4487 FPEIFGKASESLQLVFGIDV MAGE-A1 [171-190] [140-159]  5 3165 LWKKRWFVLSDLCLFYYRDE PEPP2  4 4488 QDFFPVIFSKASEYLQLVFG MAGE-A2 [186-205] [144-163]  5 3166 VTGNVTAFDGSILYLPVKLQ PIWIL2  4 4489 NKVDELAHFLLRKYRAKELV MAGE-A4 [267-286] [112-131]  5 3167 RELPLLNAMPLHSWLILYSR PIWIL3  4 4490 TTEEQEAVSSSSPLVPGTLG MAGE-A5 [497-516] [32-51]  5 3168 DVSYKVLRNETVLEFMTALC PIWIL4  4 4491 EEQKAASSSSTLIMGTLEEV MAGE-A8 [262-281] [34-53]  5 3169 GTPSKFVIPVSCAAPQKSPW PLAC1  4 4492 VIKNYKRYFPVIFGKASEFM MAGE-A9 [104-123] [138-157]  5 3170 RAVGLLTVISKGCSLNCVDD PSCA  4 4493 DNPSGHTYTLVSKLNLTNDG MAGE-B1 [45-64] [168-187]  5 3171 PSNALSTVLPGLAYLATADM SAGE1  4 4494 PLTRKSGSLVQFLLYKYKIK MAGE-B2 [359-378] [110-129]  5 3172 GNAKYANMWLEYYNLERAHG SART3  4 4495 SLTRKTKMLVQFLLYKYKMK MAGE-B4 [503-522] [108-127]  5 3173 VPDKLRSLALGVSYVILRIF SLCO6A1  4 4496 PVSPSFSSTLVSLFQSSPER MAGE-C1 [607-626] [271-290]  5 3174 MSIPFSNTHYRIPQGFGNLL SP17  4 4497 VFSPSSFSTSSSLILGGPEE MAGE-C2 [1-20] [49-68]  5 3175 IEQVARSISRLTDVSAQDFS SPATA19  4 4498 DDPQKFAMELSIIYKYSPFK MORC1 [140-159] [159-178]  5 3176 MCIYKYGSMSMSFEAHHLTV SPO11  4 4499 STEKNAVSMTSSVLSSHSPG MUC-1 [286-305] [48-67]  5 3177 EHAWTHRLRERKQLVIYEEI SSX-2  4 4500 VQPTQKQQKHRLFHWQANSE NA17-A [161-180] [45-64]  5 3178 HKDLWDFHMPERLAKEICAL SYCE1  4 4501 IWFQNRRYKTKRKQLSSELG NKX3.1 [169-188] [170-189]  5 3179 PDEVENQFILRLPLEHACTV TAF7L  4 4502 MKAINFLNQDIRGLTSASQL NR6A1 [95-114] [392-411]  5 3180 AQDAGVYQCLASNPVGTVVS TAG-1  4 4503 EDSERLMEQQGALLKRLAEA ODF2 [103-122] [281-300]  5 3181 CNLEPLVSRDPPASASLFQD TAG-2a  4 4504 EKSTKYVFDSAPSHSISART ODF3 [63-82] [109-128]  5 3182 TIQANVLEIISPNLFYALPK TDRD1  4 4505 SRVTNNVVLEAPFLVGIEGS OIP5 [941-960] [107-126]  5 3183 EEAITIVQHSSPPGLIVTSY TEX101  4 4506 VYQKRLMDEAKILKSLHHPN PBK [86-105] [77-96]  5 3184 LLKAGVISAQNIYSFGFGKA TEX14  4 4507 PTPESSTIASYVTLRKTKKM PEPP2 [194-213] [856-875]  5 3185 TSSDRTINLLEVLPWPTEWI TMEM31  4 4508 QWALYQYHIDYNPLMEARRL PIWIL1 [62-81] [126-145]  5 3186 YDNCSFYFWLHTSFIENNRL TPTE  4 4509 RQFVEFTIKEAARFKKVVLI SAGE1 [489-508] [860-879]  5 3187 VQELRRQNYSSNAYHMSSTM TSGA10  4 4510 DKKTQTFLLETPEIYWKLDS SCP-1 [645-664] [793-812]  5 3188 ECDNFYHNFTKIPTLVQIIK TSP50  4 4511 QNEFKKEMAMLQKKIMMETQ SCP3a [272-291] [201-220]  5 3189 ECMTWNQMNLGATLKGVAAG WT1  4 4512 RSIFKPFIFVDDVKLVPKTQ SCRN1 [234-253] [302-321]  5 3190 NECGKAFRHSSKLARHQRIH ZNF165  4 4513 LQFVIHSQHQNLRSVIQEME se57-1 [347-366] [246-265]  6 3191 LYGGLHMDFWCARLATKGCE ACABP  4 4514 GSSLDILSSLNSPALFGDQD SOX-6 [433-452] [475-494]  6 3192 VVDSGYGLTRVQPFHQGRPL ACTL8  4 4515 GSKVEDRFYNNHAFEEQEPP SP17 [147-166] [61-80]  6 3193 KTSYLVLRPHDVAFLLVYRE ADAM2  4 4516 RDAVKFFVAVPGQVISPQSS SPAG9 [254-273] [1223-1242]  6 3194 FTTLGLRGLSGIGAFRGMCT ADAM29  4 4517 TILVVRYRRNVKRTSPEELL SPAN-Xc [289-308] [49-68]  6 3195 ISLADLATIFFAQFVQEATY AFP  4 4518 EWEKMKVSEKIVYVYMKRKY SSX-3 [41-60] [36-55]  6 3196 FLNLVQCIQNKPLYFADRLY ANXA2  4 4519 TFGSLQAIFPKIMPKKPAEE SSX-4 [256-275] [100-119]  6 3197 ALQIVYGIRLEHFYMMPVNS CDCA1  4 4520 QRQKDLIMKVENLTLKNHFQ TAF7L [52-71] [413-432]  6 3198 KSPNAVVGHYTQLVWYSTYQ CRISP2  4 4521 AEDTALFAPSIKARFPAETY TAG-1 [128-147] [231-250]  6 3199 DKTEKVAVDPETVFKRPREC CT45  4 4522 YIEIVMVSETIHFLKNSIAK TEX15 [3-22] [2062-2081]  6 3200 NFYLPQNYIDQFLLTSFPTF CTAGE1  4 4523 MWMGLIQLVEGVKRKDQGFL TAAG-3 [28-47] [1-20]  6 3201 PQRQDRFYSNCARLSGPAEL CTAGE2  4 4524 LNAEASYKSQISTLHKSVVK TSGA10 [590-609] [470-489]  6 3202 AAVVGFFAVLFFLWRSFRSV cTAGE5  4 4525 GEEAVLLLDDIMAEVEVVAE TSPY1 [47-66] [60-79]  6 3203 CHLCLKTFRTVTLLRNHVNT CTCFL  5 4526 NSLVSLTYVSFRNLTHLESL 5T4 [287-306] [244-263]  6 3204 VFWKYRRFQRNTGEMSSNST CXorf61  5 4527 NFGTATFQAITVTKLSQKFT AFP [17-36] [229-248]  6 3205 VSRVPVYAHITHKALKDIPK DCAF12  5 4528 SVVSDMMVSIMKTLKIQVKD AKAP-3 [226-245] [291-310]  6 3206 CPDCAKRNKKMMKRLMTVEK DPPA2  5 4529 SDLQKYALGFQHALSPSTST AKAP-4 [279-298] [116-135]  6 3207 DVWSFGIVMWEVMTYGERPY EPHA2  5 4530 RKYGKSLYYYIQQDTKGDYQ ANXA2 [799-818] [309-328]  6 3208 IKNLERYMCSRFFIDFPHIE FAM46D  5 4531 LKDLWKHSFSWPFQAPVDAV BADT [255-274] [40-59]  6 3209 SMRPTLIDLLPTFRHTLQKL FBXO39  5 4532 DQSDVLMVDVATSMPVVIKE CABYR [324-343] [189-208]  6 3210 SSGTTSFKCFAPFRDVPKQM FMR1NB  5 4533 KITKQQVFIDVINKLKENVE CAGE1 [165-184] [343-362]  6 3211 DPNVACRRLMTPIMYAARDG GASZ  5 4534 FSNKGKTLVIQYTVKHEQKM CALR3 [141-160] [84-103]  6 3212 ADQPRWVSHHHPAVLNGQHP GATA-3  5 4535 ELHKRTEIIRSLTKKVKALE CCDC62 [5-24] [78-97]  6 3213 HSPLKLLTSMAISVVCFFFL Glypican-  5 4536 AKRTSRFLSGIINFIHFREA CDCA1 3 [114-133] [559-578]  6 3214 SSGTLISRALVVTHTYLEPG gp100  5 4537 AGDSLIAGSAMSKAKKLMTG CT45 [265-284] [42-61]  6 3215 MSKVMEMFQPSAVVLQCGSD HDAC1  5 4538 PSSETRAFLSPPTLLEGPLR cTAGE5 [245-264] [527-546]  6 3216 GVEEAFYTTDRVMTVSFHKY HDAC2  5 4539 DLSRDILNNFPHSIARQKRI CXorf61 [183-202]; [61-80] HDAC1 [182-201]  6 3217 GVQEAFYLTDRVMTVSFHKY HDAC3  5 4540 EVRLQNETSYSRVLHGYAAQ DCAF12 [176-195] [54-73]  6 3218 PPHTHSYTISHATLERIGAV IGFS11  5 4541 GLTGLQSLLQGFSRLFLKGN DKKL1 [398-417] [44-63]  6 3219 FQLQNIVKPLPPVYLTFTRE IL13RA2  5 4542 VDDEESVILTLVPVKDDANM DPPA2 [230-249] [18-37]  6 3220 SETETVHLFIPALSVGAIIG KOC1  5 4543 KQLENKKTGSKALAEFEEKM FAM133A [403-422] [46-65]  6 3221 HEFASLCLANMSAEYTSKVQ KU-CT-1  5 4544 PVFPQLSRSIISKLLNESET FSIP1 [126-145] [439-458]  6 3222 GTYPFCTYYFVLSIIVPDKT LIPI  5 4545 GWEIGYLDRTSQKLKRLLPI GASZ [351-370] [24-43]  6 3223 CILESLFRAVITKKVADLVG MAGE-A1  5 4546 FPKNSSFNPAALSRHMSSLS GATA-3 [92-111] [386-405]  6 3224 EKVTDLVQFLLFKYQMKEPI MAGE-A10  5 4547 KHINQLLRTMSMPKGRVLDK Glypican- [136-155] 3 [467-486]  6 3225 EVVEVVRIGHLYILVTCLGL MAGE-A12  5 4548 DRQTVMTSATWPHSVHRLAQ HAGE [165-184] [420-439]  6 3226 SRKVAELVHFLLLKYRAREP MAGE-A3  5 4549 GAGKGKYYAVNFPMRDGIDD HDAC2 [110-129] [216-235]  6 3227 EFLWGPRALAETSYVKVLEH MAGE-A4  5 4550 PNHPSRKKVNFLDMSLDDII HOM-TES-85 [271-290]; [15-34] MAGE-A8 [273-292]  6 3228 GLDTQEEALGLVGVQAATTE MAGE-A5  5 4551 SSDNNTLTSSNAYNSRYWSN IGFS11 [15-34] [305-324]  6 3229 EALKLKVAELVHFLLHKYRV MAGE-A9  5 4552 TLDDLYPMMNALKLRAESYN JARID1B [106-125] [737-756]  6 3230 EVNPTTHSYILVSMLGPNDG MAGE-B4  5 4553 EAQDIKFTEEIPLKILAHNN KOC1 [68-87] [267-286]  6 3231 DPDDSYVFVNTLDLTSEGCL MAGE-C1  5 4554 TSGKDYSVSANSRIVIVTAG LDHC [969-988] [78-97]  6 3232 EKNCEPVVPNAPPAYEKLSA MART1  5 4555 PSKGRRWAARAPSTRITYGT LEMD1 [90-109] [111-130]  6 3233 IELERKFSHQKYLSAPERAH NKX3.1  5 4556 DDTTAMASASSSATGSFSYP MAGE-A10 [137-156] [349-368]  6 3234 LIEDGYAVTQAELFALLCRL NR6A1  5 4557 EEQEAAFFSSTLNVGTLEEL MAGE-A11 [271-290] [144-163]  6 3235 LKPLVFRVDETTPAVVQSVL NYD-  5 4558 DGREDSVFAHPRKLLTQDLV MAGE-A12 TSPG [232-251] [84-103]  6 3236 NILTIRLTAADHRQLQLSIS NY-ESO-1  5 4559 PDLESEFQAALSRKVAELVH MAGE-A3 [131-150] [99-118]  6 3237 VDRELRQLRCIDEFSTRCLC ODF1  5 4560 AIPTAIDFTLWRQSIKGSSN MAGE-A5 [18-37] [70-89]  6 3238 YDKKIDSLMNAVGCLKSEVK ODF2  5 4561 FPVIFSKASDSLQLVFGIEL MAGE-A6 [123-142] [147-166]  6 3239 DSTPGPAAYMLPMVMGPNTV ODF3  5 4562 RTTATTFRARSRAPFSRSSH MAGE-B1 [134-153] [326-345]  6 3240 SIPIGWSYFIGWLVLILYFT ODF4  5 4563 TVPSAFQFWYEEALRDEEER MAGE-33 [176-195] [298-317]  6 3241 QVTLQLLDGFMITLSTDGVI PASD1  5 4564 NSDPPRYQFLWGPRAHAETS MAGE-B4 [35-54] [262-281]  6 3242 PICNDHYRSVYQKRLMDEAK PBK  5 4565 ISRYTGYFPVIFRKAREFIE MAGE-C1 [68-87] [939-958]  6 3243 PDHIQRLTYKLCHIYYNWPG PIWIL1  5 4566 DSESSFTYTLDEKVAELVEF MAGE-C2 [805-824] [132-151]  6 3244 KYTRPTLQMGMSCLLVFKVI PIWIL3  5 4567 STTHSFLFGALAELLDNARD MORC1 [561-580] [22-41]  6 3245 LDQLLRHVMNPLETLSITNC PRAME  5 4568 SSKKTYSLRSQASIIGVNLA MPHOSPH1 [313-332] [1703-1722]  6 3246 NCVDDSQDYYVGKKNITCCD PSCA  5 4569 LQRDISEMFLQIYKQGGFLG MUC-1 [60-79] [1069-1088]  6 3247 YELVEKFYDPMFKYHLTVAQ PSMA  5 4570 HRLFHWQANSERADIPASLR NA17-A [559-578] [54-73]  6 3248 SRTDKVLSTAPPQLVHMAAA SAGE1  5 4571 EKNEEIFNYNNHLKNRIYQY NY-BR-1 [122-141] [1312-1331]  6 3249 GKKHRYLRLLPEALIRFGGF SLCO6A1  5 4572 AMPFATPMEAELARRSLAQD NY-ESO-1 [45-64] [93-112]  6 3250 TTGTGVVYPGAITMATTTPS SOX-6  5 4573 LELEIIVLNDRVTDLVNQQQ ODF2 [736-755] [458-477]  6 3251 AEAAGKYSAAIALLEPAGSE SPAG1  5 4574 IILKVALNMARGLKYLHQEK PBK [462-481] [142-161]  6 3252 NILDSFTVCNSHVLCIASVP SPAG9  5 4575 VTPAMGMQMRKAIMIEVDDR PIWIL1 [780-799] [518-537]  6 3253 RLRERKQLVIYEEISDPEED SSX-2  5 4576 ETFKAVLDGLDVLLAQEVRP PRAME [167-186] [95-114]  6 3254 PPAWQPFLKDHRISTFKNWP Survivin  5 4577 KNSVKTDLMKAPMVIMDWEE PRSS55 [7-26] [202-221]  6 3255 QECKERISALNLQIEEEKNK SYCE1  5 4578 STNEVTRIYNVIGTLRGAVE PSMA [131-150] [348-367]  6 3256 REEKCVWKHGITPPLKNVRK TAF7L  5 4579 VVRLSSYSSPTLQSVLGSGT RAGE-1 [212-231] [357-376]  6 3257 RLLLRLECNVVIIAHCNLEP TAG-2a  5 4580 MTPTIRKTQKIVIKKREPLN RCAS1 [48-67] [98-117]  6 3258 TSGLELYCQKGLSMTVEADP TEX101  5 4581 HDLEIQLTAITTSEQYYSKE SCP-1 [21-40] [479-498]  6 3259 IVHLLLQISDALRYLHFQGF TEX14  5 4582 KILQQSRIVQSQRLKTIKQL SCP3a [353-372] [159-178]  6 3260 TISFFLCQMLYNRRKILQLK TEX15  5 4583 RRHELYKAHEWARAIIESDQ SCRN1 [2250-2269] [343-362]  6 3261 FYKFFLPTILSLSFFILLVL TMEM31  5 4584 IEETEYVKKIRTTLQKIRTQ se57-1 [135-154] [31-50]  6 3262 YIPLEYRSISLAIALFFLMD TPTE  5 4585 IGEYKQLMRSRRQEMRQFFT SOX-6 [121-140] [707-726]  6 3263 FYHKTNIKMRCEFLACWPAF TRAG-3  5 4586 SMKPLLRRAMAYETLEQYGK SPAG1 [24-43] [520-539]  6 3264 TRELCIKLDSSKELLNRQLV TSGA10  5 4587 EDGRVQAFGWSLPQKYKQVT SPAG9 [511-530] [639-658]  6 3265 GEPLVCSMEGTWYLVGLVSW TSP50  5 4588 HRLRERKQLVIYEEISDPEE SSX-1 [311-330] [166-185]  6 3266 LDRRGAVIQSVPGFWANVIA TSPY1  5 4589 AMTKLGFKAILPSFMRNKRV SSX-3 [145-164] [57-76]  6 3267 LCGAQYRIHTHGVFRGIQDV WT1  5 4590 GKHAWTHRLRERKQLVVYEE SSX-4 [281-300] [160-179]  6 3268 MRCHAHGPSCLVTAITREEG XAGE-1c  5 4591 ATLPPFMRNKRVADFQGNDF SSX-5 [1-20] [65-84]  7 3269 YVRNLFLTGNQLAVLPAGAF 5T4  5 4592 TNNKKKEFEETAKKVRRAIE Survivin [92-111] [117-136]  7 3270 NPGSLLQLPHTEALLVLCYS ACRBP  5 4593 DQMWRQFTDTNLAFNARISE TEKT5 [312-331] [329-348]  7 3271 QLQMSLYASGLLTGVVVDSG ACTL8  5 4594 VTELEYNYNQFSTLLKNVMS TEX15 [132-151] [2198-2217]  7 3272 DRKVICFVDVSTLNVEDKDY AKAP-4  5 4595 MPMSEVSQVSRAAQMAVPSS THEG [38-57] [247-266]  7 3273 EPLSNAVKRNVPRCIIILVL BAGE-2  5 4596 DAGLVKMSRKPRASSPLSNN TRAG-3 [48-67]; [62-81] BAGE-3 [48-67]  7 3274 ISISSLRQFETVCKFHWVEA CAGE1  5 4597 FWANVIANHPQMSALITDED TSPY1 [113-132] [158-177]  7 3275 THLYTLILRPDLSYDVKIDG CALR3  5 4598 ADASQSSMHNALHIYMNGTM TYR [169-188] [355-374]  7 3276 SSAIQSWYDEILDFVYGVGP CRISP2  5 4599 WRGRSTYRPRPRRSLQPPEL XAGE-2 [108-127] [3-22]  7 3277 HILIENRQLSRLMVGPHAAA CT47  6 4600 FSGSNASVSAPSPLVELILN 5T4 [139-158] [162-181]  7 3278 LIVLVLCSAFLLLWQGEGVN CTAGE1  6 4601 NRNVNFAMKSETKLREKMYS AKAP-3 [53-72] [417-436]  7 3279 IGCVTSINEDNIYISNSIYF CXorf48  6 4602 SKGLMVYANQVASDMMVSLM AKAP-4 [115-134] [330-349]  7 3280 NPNSLAIYRLPTLDPVCVGD DCAF12  6 4603 VGTIDMTLQSDIMTMFENNF BRDT [161-180] [927-946]  7 3281 VSVEAFLMQASGVRWCVVHG DPPA2  6 4604 SKPRLVVPYGLKTLLEGISR CABYR [209-228] [4-23]  7 3282 NTVICSKLAAKCLVMKAEMN EpCAM  6 4605 NNIENYSTNALIQPVDTISI CAGE1 [55-74] [96-115]  7 3283 VCRKWNQMMYSAELWRYRTI FBXO39  6 4606 ESGSIEYDWNLTSLKKETSP CALR3 [42-61] [192-211]  7 3284 RNRRSHRAMRVAHLELATYE FMR1NB  6 4607 DKELNDMVAVHQQQLLSWEE CCDC62 [11-30] [41-60]  7 3285 NKHHEIFNLLSFTLNPLEGK GASZ  6 4608 VGEVSTPFHIFKVKVTTERE CT46 [225-244] [212-231]  7 3286 ACGLYHKMNGQNRPLIKPKR GATA-3  6 4609 LGEEEGEQAAGLAAVPRGGS CT47 [287-306] [61-80]  7 3287 VNGMYRIYDMENVLLGLFST Glypican-  6 4610 RGSQKKHISPVQALSEFKAM CTNNA2 3 [931-950] [307-326]  7 3288 LSIGTGRAMLGTHTMEVTVY gp100  6 4611 IDESIYFSSDVVTGNVPLKV CXorf48 [170-189] [53-72]  7 3289 TEEEKWSHMQTFLQSMSSTD HAGE  6 4612 HQTAIKANNPRKFLRSVGDG DBPC [469-488] [122-141]  7 3290 AILELLKYHQRVLYIDIDIH HDAC1  6 4613 SRLSPRKTHLLYILRPSRQL DKKL1 [159-178]; [223-242] HDAC2 [160-179]  7 3291 ALSSGLYQCVASNAIGTSTC IGFS11  6 4614 QSVPQFFTFEDAPSYPEARA DMRT1 [207-226] [302-321]  7 3292 NIPPHLQWEVLDSLLVQYGV KOC1  6 4615 QKEITTRYQLDPKFITSILY EpCAM [87-106] [167-186]  7 3293 PCGARRPDSRLLQLHITMPF Lage-1  6 4616 EFNVLEMEVMRRQLYAVNRR FATE1 [77-96] [128-147]  7 3294 IPAIVHYSPDCKILVVSNPV LDHC  6 4617 KRPSFLDDPLYGISVSLSSE FSIP1 [121-140] [533-552]  7 3295 YEKKLVQLLVSPPCAPPVMN LEMD1  6 4618 KNVNQSLLDLYQLAVEKGDP FTHL17 [34-53] [109-128]  7 3296 AVITKKVADLVGFLLLKYRA MAGE-A1  6 4619 MSSTDKVIVFVSRKAVADHL HAGE [100-119] [484-503]  7 3297 LGSVIRNFQDFFPVIFSKAS MAGE-A12  6 4620 GDLVDTQSDLIATQRDLIAT HOM-TES-85 [136-155] [236-255]  7 3298 GIEVVEVVPISHLYILVTCL MAGE-A2  6 4621 PYSAVEKAMARLQELLTVSE JARID1B [163-182] [950-969]  7 3299 ASNTYTLVTCLGLSYDGLLG MAGE-A4  6 4622 ITMPFSSPMEAELVRRILSR Lage-1 [173-192] [92-111]  7 3300 AGSPGPLKSPQGASAIPTAI MAGE-A5  6 4623 LKGEMMDLQHGSLFFSTSKI LDHC [56-75] [58-77]  7 3301 DPIGHVYIFATCLGLSYDGL MAGE-A6  6 4624 LQGNIILSTEKSKKLKKWPE LEMD1 [170-189] [74-93]  7 3302 KVINYLVMLNAREPICYPSL MAGE-A9  6 4625 EESFSPTAMDAIFGSLSDEG MAGE-A11 [284-303] [177-196]  7 3303 PQRAPTTAAAAAAGVSSTKS MAGE-32  6 4626 PDLESEFQAALSRKVAKLVH MAGE-A6 [62-81] [99-118]  7 3304 FLGLLGIYDGILHSIYGDAR MAGE-B6  6 4627 VRVNARVRISYPSLHEEALG MAGE-A8 [310-329] [294-313]  7 3305 LKRAREFMELLFGLALIEVG MAGE-C2  6 4628 MHFILRKYKMREPIMKADML MAGE-3 [182-201] [116-135]  7 3306 TTAEEAAGIGILTVILGVLL MART1  6 4629 KIVGKRFREHFPEILKKASE MAGE-B2 [22-41] [139-158]  7 3307 LRLDFIHANSTTHSFLFGAL MORC1  6 4630 VQFLMEMYKMKKPIMKADML MAGE-B3 [13-32] [119-138]  7 3308 SEGCVHILDSQTVVLKEPQC MPHOSPH1  6 4631 DEESVSASQKAIIFKRLSKD MAGE-B6 [77-96] [174-193]  7 3309 ELLFRQIAWIKKLPFFCELS NR6A1  6 4632 PRELLTKVWVQGHYLEYREV MAGE-C2 [293-312] [270-289]  7 3310 KHLKHMRRMYGTSLYQFIPL NYD-  6 4633 EKPLNSFQYQRRQAMGIPFI MORC1 TSPG [464-483] [161-180]  7 3311 LSISSCLQQLSLLMWITQCF NY-ESO-1  6 4634 KFSVWVSFFEIYNEYIYDLF MPHOSPH1 [147-166] 268-287]  7 3312 ERENRYDCLGSKKYSYMNIC ODF1  6 4635 NGGSSLSYTNPAVAAASANL MUC-1 [153-172] [1236-1255]  7 3313 KHTPTKLRAPAYSFRGAPML ODF3  6 4636 QPERLLFVIDSFEELQGGLN NLRP4 [40-59] [222-241]  7 3314 TDGVIICVAENISSLLGHLP PASD1  6 4637 QEMVQAFSAQSGMKLEWSQK NXF2 [50-69] [573-592]  7 3315 SEKKKSVLCSTPTINIPASP PBK  6 4638 ITKRSEQIVEFLLIKNANAN NY-BR-1 [14-33] [124-143]  7 3316 YAASIRRTDGGLFLLADVSH PIWIL2  6 4639 ADSVHLAWDLSRSLGAVVFS OIP5 [363-382] [88-107]  7 3317 MKVFKFIGLMILLTSAFSAG PLAC1  6 4640 WQQRQFYNKQSTLPRHSTLS PEPP2 [1-20] [506-525]  7 3318 LSLQCLQALYVDSLFFLRGR PRAME  6 4641 ESVGLVSMFRGLGIETVSKT PIWIL2 [293-312] [67-86]  7 3319 PRSWLLLCPLSHVLFRAILY PRSS55  6 4642 QENPAAFVRAIQQYVDPDVQ PIWIL4 [333-352] [526-545]  7 3320 NITCCDTDLCNASGAHALQP PSCA  6 4643 KAVSQDMVIYSTEIHYSSKG PLAC1 [74-93] [85-104]  7 3321 LSPQCLSLLHAMVAYDPDER RAGE-1  6 4644 DNDIALLLLASPIKLDDLKV PRSS55 [254-273] [154-173]  7 3322 AAGISSTITRDLYVTATHSV SAGE1  6 4645 EIQALRRLNPHPNILMLHEV RAGE-1 [657-676] [50-69]  7 3323 TREPAAEIEALLGMDLVRLG SCRN1  6 4646 EEEEDAAWQAEEVLRQQKLA RCAS1 [97-116] [160-179]  7 3324 IAECTSMIGYALGYVLGAPL SLCO6A1  6 4647 FIQATDYVEIWQAYLDYLRR SART3 [269-288] [411-430]  7 3325 EIADDLSILYSNRAACYLKE SPAG1  6 4648 MEESNKARAAHSFVVTEFET SCP-1 [481-500] [363-382]  7 3326 GVWVSIRLDSTLRLYHAHTY SPAG9  6 4649 RLKTIKQLYEQFIKSMEELE SCP3a [1101-1120] [171-190]  7 3327 INMISGVLQRYCRFGSRPLQ SSX-3  6 4650 GETAKEALDVIVSLLEEHGQ SCRN1 [151-170] [120-139]  7 3328 KLNYEVMTKLGFKVTLPPFM SSX-4  6 4651 EAGAAALRNVAQRLFENYQT se57-1 [52-71] [121-140]  7 3329 FLEGCACTPERMAEAGFIHC Survivin  6 4652 ISGKEEETSVTILDSSEEDK SP17 [27-46] [92-111]  7 3330 QSGRKLAELQASLSKYCDQL TDRD1  6 4653 IDVVESEAVSVLHHWLKKTE SPATA19 [515-534] [28-47]  7 3331 ILLVLGASLLTSGLELYCQK TEX101  6 4654 QGIRNLVTDAKFVLIVEKDA SPO11 [11-30] [208-227]  7 3332 LHFQGFIHASLSSYAVHIIS TEX14  6 4655 EKRSKAFDDIATYFSKKEWK SSX-1 [367-386] [19-38]  7 3333 FELYPEFLLVFKEAFHDISH TMEM31  6 4656 GFKAILPSFMRNKRVTDFQG SSX-3 [91-110] [62-81]  7 3334 LAIALFFLMDVLLRVFVERR TPTE  6 4657 ISEKLRKAFDDIAKYFSKKE SSX-4 [131-150] [17-36]  7 3335 LLKEHLCLAENKMAIQSRDV TSGA10  6 4658 HRVRERKQLVIYEEISDPQE SSX-5 [594-613] [166-185]  7 3336 FRSNPYFQNKVITKEYLVNI TSPY1  6 4659 QALAPDFALNPVRRLIPAAR TAG-1 [205-224] [413-432]  7 3337 EQASRIWSWLLGAAMVGAVL TYR  6 4660 IMLLKNFMLNQNVMLSVKGI TDRD1 [469-488] [1072-1091]  7 3338 ALPVSGAAQWAPVLDFAPPG WT1  6 4661 DNIKHSQNMRANSIQLREEA TEKT5 [25-44] [301-320]  7 3339 EEGGPRSGGAQAKLGCCWGY XAGE-1c  6 4662 PKIRDNFWSMPMSEVSQVSR THEG [18-37] [238-257]  8 3340 LVPDGAVCSNLPYASWFESF ACRBP  6 4663 HNALHIYMNGTMSQVQGSAN TYR [84-103] [363-382]  8 3341 YAGGVVLHPRTISLESLAVI ADAM2  6 4664 DLERGTDEAVLQVQAHEHGQ ZNF165 [291-310] [126-145]  8 3342 MCTPHRSCAIVTFMNKTLGT ADAM29  7 4665 GLGGLRMDSNFDSLPVQITV ADAM2 [306-325] [10-29]  8 3343 DKLVESVMKLCLIMAKYSND AKAP-4  7 4666 EIKPLAFSTTFEHLVYKMDS ADAM29 [698-717] [135-154]  8 3344 LEPEDGTALDVHFVSTLEPL BAGE-2  7 4667 ASFVHEYSRRHPQLAVSVIL AFP [31-50]; [352-371] BAGE-3 [31-50]  8 3345 FAADVRLMFMNCYKYNPPDH BADT  7 4668 DDFTASVSEGIMTYANSVVS AKAP-3 [337-356] [275-294]  8 3346 SGIINFIHFREACRETYMEF CDCA1  7 4669 SDTSGDFRKLMVALAKGRRA ANXA2 [122-141] [161-180]  8 3347 RCGENLYMSSDPTSWSSAIQ CRISP2  7 4670 VDAVKLQLPDYYTIIKNPMD BRDT [93-112] [56-75]  8 3348 NESSMLSTDTKKASILLIRK CT46  7 4671 TMYRGNTTMDIKDLVKQFHQ CABYR [137-156] [45-64]  8 3349 ANFDLAVVARRYPASGIHFV CT47  7 4672 SRQMVTDLELSTLLPISHEN CCDC62 [103-122] [641-660]  8 3350 YIDQFLLTSFPTFTSVGVLI CTAGE1  7 4673 TLSFPRYNVAEIVIHIRNKI CDCA1 [35-54] [3-22]  8 3351 FAMRNVYLPRGFLPYRPPRP CTAGE2  7 4674 AMSKAKKLMTGHAIPPSQLD CT45 [717-736] [51-70]  8 3352 PKYQCPHCATIIARKSDLRV CTCFL  7 4675 DALQKKYLRMVVLAVYTNPE CT46 [426-445] [87-106]  8 3353 VVLTVKASYVASTKYQKVYG CTNNA2  7 4676 LTERLLKMKDGVAMLEEDVT CTAGE2 [876-895] [237-256]  8 3354 PQVDDIVNVVMVESIQFCFI CXorf48  7 4677 SKSLKSQVAEAKMTFKIFQM cTAGE5 [211-230] [180-199]  8 3355 LGTVKWFNVRNGYGFINRND DBPC  7 4678 KSDLRVHMRNLHAYSAAELK CTCFL [95-114] [440-459]  8 3356 SGIRSVSFYEHIITVGTGQG DCAF12  7 4679 FGKEMVKLNYVAARRQQELK CTNNA2 [341-360] [179-198]  8 3357 KNMENRHAMSSQYRMHSYYP DMRT1  7 4680 KRILVNLSMVENKLVELEHT CXorf61 [276-295] [78-97]  8 3358 TKGWVRLQFHAGQAWVPTTH DPPA2  7 4681 NRRKSRRFIPRPPSVAPPPM DBPC [235-254] [176-195]  8 3359 LAAATATFAAAQEECVCENY EpCAM  7 4682 LQGFSRLFLKGNLLAGIDSL DKKL1 [13-32] [52-71]  8 3360 VSGLVTSRSFRTASVSINQT EPHA2  7 4683 ASEGRMVIQDIPAVTSRGHV DMRT1 [418-437] [178-197]  8 3361 EPPPVSFQPYHPLHFRGSNG FAM46D  7 4684 PGHQKRIAYSLLGLKDQVNT EPHA2 [368-387] [952-971]  8 3362 GQSLEEDSALEALLNFFFPT FMR1NB  7 4685 LDPMLDFYSDKNAKLTKESY FAM46D [113-132] [180-199]  8 3363 CILKQKSIIKLSSERKKEDI FSIP1  7 4686 PGTDAVAQTSLEEFNVLEME FATE [415-434] [116-135]  8 3364 GWTPLMYAASVANAELVRVL GASZ  7 4687 AIQKMKKLDKILAKKQRREK FSIP1 [79-98] [118-137]  8 3365 DCVLYRYGSFSVTLDIVQGI gp100  7 4688 HFLESHYLHEQVKTIKELGG FTHL17 [474-493] [132-151]  8 3366 HEELPLCFALKSHFVGAVIG HAGE  7 4689 EKIKQRLFENLRMLPHAPGV HDAC2 [65-84] [361-380]; HDAC1 [360-379]  8 3367 GILELLKYHPRVLYIDIDIH HDAC3  7 4690 TIFENLKMLNHAPSVQIHDV HDAC3 [153-172] [361-380]  8 3368 VGFTGTMPATNVSIFINNTQ IGFS11  7 4691 PSQKPSGFKSGQHPLNGQPL HOM-TES-85 [92-111] [92-111]  8 3369 LPPVYLTFTRESSCEIKLKW IL13RA2  7 4692 GSETWKTIITKNLHYKDGFD IL13RA2 [239-258] [77-96]  8 3370 VDILTYIVWKISGLPVTRVI LDHC  7 4693 IEEIPAYLPNGAALKDSVQR JARID1B [140-159] [997-1016]  8 3371 DHFPLLFSEASECMLLVFGI MAGE-A10  7 4694 DVGYGRSISSSSSLARSSKE KU-CT-1 [170-189] [621-640]  8 3372 EYLQLVFGIEVVEVVRIGHL MAGE-A12  7 4695 SRGATTFIYNRAVKNTRKVA LIPI [156-175] [135-154]  8 3373 GPRALIETSYVKVLHHTLKI MAGE-A2  7 4696 PRAHAEIRKMSLLKFLAKVN MAGE-A10 [274-293] [300-319]  8 3374 SSSSPLVPGTLGEVPAAGSP MAGE-A5  7 4697 VKGLITKAEMLGSVIKNYED MAGE-A11 [40-59] [239-258]  8 3375 RALIETSYVKVLHHMVKISG MAGE-A6  7 4698 EEQEAASSSSTLVEVTLGEV MAGE-A3 [276-295] [34-53]; MAGE-A6 [34-53]  8 3376 AGHSYILVTCLGLSYDGLLG MAGE-A8  7 4699 EERAQVASSVRARRATTATT MAGE-B1 [175-194] [312-331]  8 3377 WGPRAYAETTKMKVLEFLAK MAGE-B1  7 4700 IEKKQSFSQGLSSTVQSRTD MAGE-B3 [272-291] [90-109]  8 3378 TDEESLLSSWDFPRRKLLMP MAGE-B2  7 4701 FPEIFRKVSQRTELVFGLAL MAGE-B4 [187-206] [147-166]  8 3379 SDPPCYEFLWGPRAYAETTK MAGE-B6  7 4702 SLLQIPMTSSFSSTLLSIFQ MAGE-C1 [350-369] [336-355]  8 3380 IGILTVILGVLLLIGCWYCR MART1  7 4703 TSPQLSTGVSFFFLSFHISN MUC-1 [30-49] [1032-1051]  8 3381 EESLSEVVVPMPSWLIRTRE MORC1  7 4704 TETQVKIWFQNRRYKTKRKQ NKX3.1 [136-155] [164-183]  8 3382 NISQCYLAYDETLNVLKFSA MPHOSPH1  7 4705 MQDPAFVKQAVNLLQEANFH NLRP4 [455-474] [560-579]  8 3383 SSLRKLCFSVQNVFKKEDEH NLRP4  7 4706 QMEMLKLTMNKRYNVSQQAL NXF2 [597-616] [213-232]  8 3384 QDNEWNYTRAGQAFTMLQTE NXF2  7 4707 AQRKSKSLKINLNYAGDALR NY-BR-1 [595-614] [1200-1219]  8 3385 HEEVVTFLVDRKCQLDVLDG NY-BR-1  7 4708 ATSAQNIEFLQVIAKREEAI 0DF2 [29-48] [675-694]  8 3386 CGARGPESRLLEFYLAMPFA NY-ESO-1  7 4709 PINIWIFELERNVSIPIGWS ODF4 [78-97] [163-182]  8 3387 LASSCCSSNILGSVNVCGFE ODF1  7 4710 THNRLKSLMKILSEVTPDQS OIP5 [116-135] [206-225]  8 3388 DKMVCYLLKTKAIVNASEMD OIP5  7 4711 SQEIEMHADNPAAIQTVVLQ PEPP2 [167-186] [674-693]  8 3389 PEVNPLYRADPVDLEFSVDQ PASD1  7 4712 YNPLMEARRLRSALLFQHED PIWIL1 [291-310] [136-155]  8 3390 DKADIFAFGLTLWEMMTLSI PBK  7 4713 FGERHIFDGNSLLLSRPLKE PIWIL3 [226-245] [170-189]  8 3391 GLKPDHMQRLTFKLCHLYYN PIWIL4  7 4714 SNKAKAFDGAILFLSQKLEE PIWIL4 [793-812] [151-170]  8 3392 VTECGIRAKAVSQDMVIYST PLAC1  7 4715 LKKEGWRPRRTILFASWDAE PSMA [77-96] [405-424]  8 3393 EVGEFPWQVSIQARSEPFCG PRSS55  7 4716 QQRKKMEKEAQRLMKKEQNK RCAS1 [75-94] [188-207]  8 3394 LHEVVFDRKSGSLALICELM RAGE-1  7 4717 EKVHSLFRRQLAIPLYDMEA SART3 [66-85] [245-264]  8 3395 VFSFLKRLICRSGRGRKLSG RCAS1  7 4718 EQEQSSLRASLEIELSNLKA SCP-1 [18-37] [739-758]  8 3396 SLEKHKLFISGLPFSCTKEE SART3  7 4719 NLLTGAQNEFKKEMAMLQKK SCP3a [797-816] [195-214]  8 3397 AEGSKAMNGSAAKLQQYYCW SOX-6  7 4720 ERKLSLENKLLQLKSSATYG se57-1 [576-595] [207-226]  8 3398 MTFGRLHRIIPKIMPKKPAE SSX-1  7 4721 SYNHKQIEQLYAAQLASMQV SOX-6 [99-118] [360-379]  8 3399 TENEPDLAQCFFCFKELEGW Survivin  7 4722 REILREQPDNIPAFAAAYFE SP17 [48-67] [25-44]  8 3400 ACTVRNLARSQSVKMKDKLK TAF7L  7 4723 HLSKSDLLANQSQEVLEERT SPATA19 [111-130] [93-112]  8 3401 SIKARFPAETYALVGQQVTL TAG-1  7 4724 ASIENIIQDIITSLARNEAP SPO11 [240-259] [49-68]  8 3402 PLVSRDPPASASLFQDTCAG TAG-2a  7 4725 GKHAWTHRLRERKQLVIYEE SSX-1 [67-86] [160-179]  8 3403 AVGPMFVREACPHQLLTQPR TEX101  7 4726 QIPEKIQKAFDDIAKYFSKE SSX-2 [199-218] [16-35]  8 3404 VGPPSLNYIPPVLQLSGGQK TEX14  7 4727 KYFSEKEWEKMKASEKIIYV SSX-5 [794-813] [30-49]  8 3405 KAQMEKIGLPIILHLFALST TMEM31  7 4728 AEGPSTLDEGLFLRSQEAAA SYCE1 [113-132] [219-238]  8 3406 YFWLHTSFIENNRLYLPKNE TPTE  7 4729 DADSSAQAAAQAPENFQEGK TAF7L [495-514] [66-85]  8 3407 EAPPIYLQVSSYQHWIWDCL TSP50  7 4730 VSREAILRFGFLQEFSKEER TAG-1 [338-357] [121-140]  8 3408 TLAKHTISSDYVIPIGTYGQ TYR  7 4731 GGAESERGLPASTLSRLSNR TAG-2a [139-158] [29-48]  8 3409 WAPVLDFAPPGASAYGSLGG WT1  7 4732 GFWKSELSYELDRLLTENQN TEKT5 [34-53] [149-168]  8 3410 GGAQAKLGCCWGYPSPRSTW XAGE-1c  7 4733 ALKSRISWEGLLALDNGEME TEX15 [25-44] [712-731]  8 3411 LKQELCRQLFRQFCYQDSPG ZNF165  7 4734 RPKRFYLEYYNNNRTTPVWP THEG [43-62] [199-218]  9 3412 PAGAFARRPPLAELAALNLS 5T4  7 4735 VLGEAWRDQVDWSRLLRDAG TRAG-3 [107-126] [45-64]  9 3413 FKSQQCLMANRNRKVSRMRC ACRBP  7 4736 SDVPVLQVIMHSRYRAQRFW TSP50 [490-509] [179-198]  9 3414 SVESCEISLRPLLVSHVMAC ACTL8  7 4737 FKWNSDFINHQIIYAGEKNH ZNF165 [279-298] [301-320]  9 3415 EELQKYIQESQALAKRSCGL AFP  8 4738 LRHLDLSNNSLVSLTYVSFR 5T4 [399-418] [236-255]  9 3416 AVSPEFAYVPADPAQLAAQM CABYR  8 4739 KTLEFAGQDLSAYLLKSLFK ACTL8 [160-179] [171-190]  9 3417 ECADQRLAISHSQIAHLEER CAGE1  8 4740 YKEVSKMVKDALTAIEKPTG AFP [713-732] [60-79]  9 3418 REKLKSQEIFLNLKTALEKY CDCA1  8 4741 LMTDTQFVSAVKRTVFSHGS AKAP-3 [414-433] [348-367]  9 3419 QLVWYSTYQVGCGIAYCPNQ CRISP2  8 4742 PKWISIMTERSVPHLQKVFD ANXA2 [139-158] [211-230]  9 3420 KRKLVKELRCVGQKYEKIFE CT45  8 4743 EVPAQLLDAEGAIKIGSEKS CABYR [127-146] [397-416]  9 3421 NKISTEHQSLVLVKRLLAVS CT46  8 4744 EKVSDIMLQKLKSLHLKKKT CAGE1 [18-37] [645-664]  9 3422 YLPRGFLPYRPPRPAFFPPA CTAGE2  8 4745 DSRFGHFRLSSGKFYGHKEK CALR3 [723-742] [43-62]  9 3423 LPQGDTQLTTVQGVVTSFCG CXorf48  8 4746 VEWMSIFKPSKMQRIVRLKS CCDC62 [29-48] [532-551]  9 3424 PPARSQADKPVLAIQVLGTV DBPC  8 4747 SQIDDFTGFSKDRMMQKPGS CT45 [79-98] [71-90]  9 3425 AENTLSKLLSTKLPYCRENV DCAF12  8 4748 LLEKDPYALDVPNTAFGREH cTAGE5 [281-300] [497-516]  9 3426 PYYNNLYNCPQYSMALAADS DMRT1  8 4749 NSTALALVRPSSSGLINSNT CXorf61 [220-239] [34-53]  9 3427 KALNSCSIPVSVEAFLMQAS DPPA2  8 4750 PRMEEKEALVPIQKATDSFH DKKL1 [200-219] [141-160]  9 3428 ALLSVRVYYKKCPELLQGLA EPHA2  8 4751 TRPKKMGSQLPKPRMLRESG FATE1 [190-209] [73-92]  9 3429 CQILDSLSYMRNENVISELN FBXO39  8 4752 MGKRLDYLNLKGARLTVEQG FBXO39 [180-199] [160-179]  9 3430 CYYLSYYLCSGSSYFVLANG FMR1NB  8 4753 LSDDKMEHAQKLMRLQNLRG FTHL17 [83-102] [59-78]  9 3431 KYDTNCDAAINSHITLELYT FTHL17  8 4754 KLESSHSRGSMTALGGASSS GATA-3 [12-31] [195-214]  9 3432 NGYTALTWAARQGHKNIVLK GASZ  8 4755 YYPEDLFIDKKVLKVAHVEH Glypican- [181-200] 3 [361-380]  9 3433 HVPPYYGNSVRATVQRYPPT GATA-3  8 4756 NHHSERSRNHLERSLSQSDR HOM-TES-85 [59-78] [156-175]  9 3434 RCLLHLAVIGALLAVGATKV gp100  8 4757 EGDALRYMIERTVNWQHRAQ JARID1B [7-26]] [1248-1267]  9 3435 KCVEVVKTFNLPLLMLGGGG HDAC2  8 4758 LDKLNGFQLENFTLKVAYIP KOC1 [284-303] [136-155]  9 3436 INQVVDFYQPTCIVLQCGAD HDAC3  8 4759 LLRELDVMNSVIAQLAPEEE KU-CT-1 [240-259] [103-122]  9 3437 SKKTLLRFWLPFGFILILVI IL13RA2  8 4760 REGAGRMRVVGWGLGSASPE Lage-1 [337-356] [142-161]  9 3438 DLLHQLVTIMNPNTLMTHEV JARID1B  8 4761 LSTEKSKKLKKWPEASTTKR LEMD1 [547-566] [80-99]  9 3439 EAHIRVPSFAAGRVIGKGGK KOC1  8 4762 GSIPLWLQNFVRILLNEEDM LIPI [489-508] [108-127]  9 3440 IIKLKGYTSWAIGLSVMDLV LDHC  8 4763 QSPQGASAFPTTINFTRQRQ MAGE-A1 [241-260] [56-75]  9 3441 TTKRKAVDTYCLDYKPSKGR LEMD1  8 4764 GSVIKNYEDYFPEIFREASV MAGE-A11 [96-115] [250-269]  9 3442 FIKCNHQRAVHLFMASLETN LIPI  8 4765 KLLTQHFVQENYLEYRQVPG MAGE-A3 [269-288] [244-263]  9 3443 EEALEAQQEALGLVCVQAAT MAGE-A1  8 4766 TTEEQEAAVSSSSPLVPGTL MAGE-A4 [13-32] [32-51]  9 3444 GPITQIFPTVRPADLTRVIM MAGE-A11  8 4767 VGKEHMFYGEPRKLLTQDWV MAGE-A9 [92-111] [231-250]  9 3445 ALVETSYVKVLHHLLKISGG MAGE-A12  8 4768 FWAKVNKTVPSAFQFWYEEA MAGE-B3 [277-296] [291-310]  9 3446 EYLQLVFGIEVVEVVPISHL MAGE-A2  8 4769 EPTTKAEMLKIISKKYKEHF MAGE-B4 [156-175] [128-147]  9 3447 LERVIKNYKRCFPVIFGKAS MAGE-A4  8 4770 IESEPLFTYTLDEKVDELAR MAGE-C1 [137-156] [898-917]  9 3448 APEEVIWEALSVMGVYVGKE MAGE-A9  8 4771 KKKVLEFLAKLNNTVPSSFP MAGE-C2 [215-234] [311-330]  9 3449 PITKAEMLTNVISRYTGYFP MAGE-C1  8 4772 AASRYNLTISDVSVSDVPFP MUC-1 [928-947] [1128-1147]  9 3450 MPREDAHFIYGYPKKGHGHS MART1  8 4773 PTPSKPLTSFLIQDILRDGA NKX3.1 [1-20] [20-39]  9 3451 IEDSEMSRVIRVSELSLCDL MPHOSPH1  8 4774 SSRSVELNGFMAFREQYMGM NR6A1 [362-381] [198-217]  9 3452 CFPKLLRLDGRELSAPVIVD NXF2  8 4775 SNLQNNYAHLTNSSINKSGA NYD-TSPG [349-368] [288-307]  9 3453 SEIVGMLLQQNVDVFAADIC NY-BR-1  8 4776 KLVEAEMDGAAAAKQVMALK ODF2 [162-181] [210-229]  9 3454 CIDEFSTRCLCDLYMHPYCC ODF1  8 4777 SAPSHSISARTKAFRVDSTP ODF3 [27-46] [118-137]  9 3455 IWIFELERNVSIPIGWSYFI ODF4  8 4778 AFSKKWLDLSRSLFYQRWPV ODF4 [166-185] [99-118]  9 3456 ERCAVFQCAQCHAVLADSVH OIP5  8 4779 DLNLEWISLPRSWTYGITRG PEPP2 [73-92] [4-23]  9 3457 AVYVEPAAAAAAAAISDDQI PASD1  8 4780 NSLIQNLFKVTPAMGMQMRK PIWIL1 [223-242] [509-528]  9 3458 DFDDEAYYAALGTRPPINME PBK  8 4781 KWYSRVVFQMPHQEIVDSLK PIWIL2 [265-284] [770-789]  9 3459 KKAIQLYRHGTSLEIWLGYV PIWIL3  8 4782 LHSWLILYSRSSHREAMSLK PIWIL3 [249-268] [507-526]  9 3460 TRNEWYDFYLISQVACRGTV PIWIL4  8 4783 QLTTLSFYGNSISISALQSL PRAME [761-780] [407-426]  9 3461 LLTSAFSAGSGQSPMTVLCS PLAC1  8 4784 EMKTYSVSFDSLFSAVKNFT PSMA [12-31] [621-640]  9 3462 LLKDEALAIAALELLPRELF PRAME  8 4785 PAPDNVLLTLRPRRINMTDT SAGE1 [34-53] [216-235]  9 3463 ECGDRSIFEGRTRYSRITGG PR5555  8 4786 KDKRDYLWTSAKNTLSTPLP SCP-1 [52-71] [833-852]  9 3464 YPANEYAYRRGIAEAVGLPS PSMA  8 4787 QEEKILNMFRQQQKILQQSR SCP3a [272-291] [146-165]  9 3465 QPYTEYISTRWYRAPECLLT RAGE-1  8 4788 DQEQGRKLRSTMLELEKQGL SCRN1 [156-175] [361-380]  9 3466 PPQLVHMAAAGIPSMSTRDL SAGE1  8 4789 KKIRTTLQKIRTQMFKDEIR se57-1 [132-151] [38-57]  9 3467 RRKVLSRAVAAATYKTMGPA SART3  8 4790 QSSGISFQSKYLSFFILGQT SLCO6A1 [35-54] [218-237]  9 3468 AAPPSYCFVAFPPRAKDGLV SCRN1  8 4791 TPNNHFTLEDIQALKRQYEL SPAG1 [3-22] [907-926]  9 3469 LCTIIFTTIAFFIYKRRLNE SLCO6A1  8 4792 GYRNKIYVVQPKAMKIEKSF SPAG9 [678-697] [1063-1082]  9 3470 YAAQLASMQVSPGAKMPSTP SOX-6  8 4793 EMTEDIMRDRIEQVRRSISR SPATA19 [370-389] [130-149]  9 3471 CEKHLQALAPESRALRKDKP SPAG1  8 4794 YATKRDIYYTDSQLFGNQTV SPO11 [61-80] [130-149]  9 3472 TFIPYCSMAHAQLCFHGHRD SPAG9  8 4795 MNGDDAFARRPTVGAQIPEK SSX-2 [1205-1224] [1-20]  9 3473 PPGKPTTSEKINMISGVLQR SSX-3  8 4796 MNGDDTFARRPTVGAQIPEK SSX-3 [141-160] [1-20]  9 3474 FHMPERLAKEICALDSSKEQ SYCE1  8 4797 VTLPPFMRSKRAADFHGNDF SSX-4 [175-194] [65-84]  9 3475 TLPLCRVQPITSSHLALPFQ TDAD1  8 4798 RGKHAWTHRVRERKQLVIYE SSX-5 [1032-1051] [159-178]  9 3476 SSPPGLIVTSYSNYCEDSFC TEX101  8 4799 VHLKEILSKKQETLRILRLH SYCE1 [95-114] [96-115]  9 3477 CKMSLHFCLCWPSVYWTERF THEG  8 4800 LGVTKEIAIWAERIMFSDLR TDAD1 [158-177] [237-256]  9 3478 FLLVFKEAFHDISHCLKAQM TMEM31  8 4801 LVNEVFTIDDTLQTLKLRLR TEKT5 [97-116] [415-434]  9 3479 DRTGTMVCAFLIASEICSTA TPTE  8 4802 YGLEHIFFDAAKNLVWKERT TEX15 [343-362] [1882-1901]  9 3480 HCLIWRDVIYSVRVGSPWID TSP50  8 4803 PSTTMTKARKRRRRRRLMEL THEG [153-172] [112-131]  9 3481 DSCTGSQALLLRTPYSSDNL WT1  8 4804 KARQSEADNNTLKLELITAE TSGA10 [207-226] [430-449] 10 3482 LASNHFLYLPRDVLAQLPSL 5T4  8 4805 HHNSSLNFFNWFSDHNFAGS TSPY1 [217-236] [250-269] 10 3483 RKPAAGFLPSLLKVLLLPLA ACRBP  9 4806 QDFAKYIEMHVIVEKQLYNH ADAM2 [2-21] [174-193] 10 3484 ENPGPSYARRRVSLGIDICH ACTL8  9 4807 DSEEKQFSTMRSGFMQNEIT ADAM29 [40-59] [153-172] 10 3485 LTNAIFVSFNITIILSSLEL ADAM2  9 4808 KQLQAVLQWVAASELNVPIL AKAP-3 [211-230] [771-790] 10 3486 ILQINDFAYEIKPLAFSTTF ADAM29  9 4809 MTDSDFVSAVKRNLFNQWKQ AKAP-4 [126-145] [398-417] 10 3487 ENCYSVYADQVNIDYLMNRP AKAP-4  9 4810 RYKSYSPYDMLESIRKEVKG ANXA2 [153-172] [231-250] 10 3488 VSNLSQGVMLSHSPICMETT CAGE1  9 4811 LKAVHQQLQVLSQVPFRKLN BADT [38-57] [430-449] 10 3489 AIGLELWQVRSGTIFDNFLI CALA3  9 4812 AISARFKPFSNKGKTLVIQY CALA3 [299-318] [76-95] 10 3490 TKKASILLIRKIYILMQNLG CT46  9 4813 LHNLRQIYVKQQSDLQFLNF CCDC62 [146-165] [282-301] 10 3491 QLSRLMVGPHAAARNLWGNL CT47  9 4814 EEGEQAAGLAAVPRGGSAEE CT47 [146-165] [64-83] 10 3492 ELYQENEMKLYRKLIVEEKC CTAGE2  9 4815 LSGPAELRSFNMPSLDKMDG cTAGE5 [357-376] [634-653] 10 3493 PPPAPFAMRNVYPPRGFPPY cTAGE5  9 4816 MSGDERSDEIVLTVSNSNVE CTCFL [743-762] [206-225] 10 3494 ACKQDLLAYLQRIALYCHQL CTNNA2  9 4817 LVYDGVRDIRKAVLMIRTPE CTNNA2 [770-789] [615-634] 10 3495 GPSDSGTRVLIGCVTSINED CXorf48  9 4818 LEHTLLSKGFRGASPHRKST CXorf61 [105-124] [94-113] 10 3496 SGQRPRRWCPPPFFYRRRFV DBPC  9 4819 VAFWIIKLPRRRSHQDALEG DKKL1 [216-235] [167-186] 10 3497 DSSGTKLFVAGGPLPSGLHG DCAF12  9 4820 KTQNDVDIADVAYYFEKDVK EpCAM [427-446] [202-221] 10 3498 YPPPSYLGQSVPQFFTFEDA DMRT1  9 4821 IVKDARLNGSVASYILASHN FAM46D [294-313] [57-76] 10 3499 LASWARIAARAVQPKALNSC DPPA2  9 4822 LQEYAGNFQGIRFHYDRNPG FATE1 [186-205] [98-117] 10 3500 EKAPEFSMQGLKAGVIAVIV EpCAM  9 4823 EMENTKKFLSLTAVSEETVG FSIP1 [254-273] [168-187] 10 3501 SCKETFNLYYAESDLDYGTN EPHA2  9 4824 VLLGLFSTIHDSIQYVQKNA Glypican- [114-133] 3 [319-338] 10 3502 LRHKCCFSSSGTTSFKCFAP FMR1NB  9 4825 PKASTWVVASRRSSTVSRAP HAGE [157-176] [8-27] 10 3503 AQKLMRLQNLRGGHICLHDI FTHL17  9 4826 NQPEQVILYQGGQMFDGAPR IGFS11 [67-86] [68-87] 10 3504 TTYPPYVPEYSSGLFPPSSL GATA-3  9 4827 KKNSYHFSAGFGSPIEDKSE KU-CT-1 [220-239] [643-662] 10 3505 DDMVNELFDSLFPVIYTQLM Glypican-  9 4828 VLKDFTVSGNLLFMSVRDQD Lage-1 3 [122-141] [164-183] 10 3506 CLNVSLADTNSLAVVSTQLI gp100  9 4829 KLLTQDWVQENYLEYRQVPG MAGE-A10 [566-585] [269-288]; MAGE-A4 [245-264] 10 3507 KYHSDDYIKFLRSIRPDNMS HDAC1  9 4830 APEEKIWEELSVLEVFEGRE MAGE-A3 [66-85] [216-235]; MAGE-A6 [216-235] 10 3508 SYKHLFQPVINQVVDFYQPT HDAC3  9 4831 KSPQGASAIPTAIDFTLWRQ MAGE-A5 [231-250] [63-82] 10 3509 ISHATLERIGAVPVMVPAQS IGFS11  9 4832 LRKLLTQEWVQENYLEYRQA MAGE-A8 [406-425] [245-264] 10 3510 PQDFEIVDPGYLGYLYLQWQ IL13RA2  9 4833 DHFTEILNGASRRLELVFGL MAGE-B1 [35-54] [144-163] 10 3511 MNPNTLMTHEVPVYRTNQCA JARID1B  9 4834 KASEGLSVVFGLELNKVNPN MAGE-B2 [556-575] [155-174] 10 3512 MYVIDLMFHPGGLMKLRSRE KU-CT-1  9 4835 ILKKASFNMEVVFGVDLKKV MAGE-B3 [846-865] [152-171] 10 3513 ISSIGLTYFQSSNLQCSTCT LIPI  9 4836 DTTPNNFPLLYEEALRDEEE MAGE-B4 [418-437] [294-313] 10 3514 TGHSYVLVTCLGLSYDGLLG MAGE-A1  9 4837 DSSGESYTLVSKLGLPSEGI MAGE-B6 [165-184] [256-275] 10 3515 AQDRIATTDDTTAMASASSS MAGE-A10  9 4838 MIVIKYKDYFPVILKRAREF MAGE-C2 [341-360] [169-188] 10 3516 EVLSIMGVYAGREHFLFGEP MAGE-A11  9 4839 EKQRELKTARTLSLFYGVNV MORC1 [336-355] [341-360] 10 3517 MAELVHFLLLKYRAREPFTK MAGE-A12  9 4840 TDYYQELQRDISEMFLQIYK MUC-1 [113-132] [1063-1082] 10 3518 SVLRNCQDFFPVIFSKASEY MAGE-A2  9 4841 AETEPERHLGSYLLDSENTS NKX3.1 [138-157] [91-110] 10 3519 ALVETSYVKVLHHMVKISGG MAGE-A3  9 4842 RNKSVRYLDLSANVLKDEGL NLRP4 [277-296] [805-824] 10 3520 SGGPRISYPLLHEWALREGE MAGE-A6  9 4843 RSLDPQSYSLIHQLLSAEDL NR6A1 [294-313] [244-263] 10 3521 MLGDGHSMPKAALLIIVLGV MAGE-A9  9 4844 PNDYTKFVAEYFQERQMLGT NYD-TSPG [188-207] [185-204] 10 3522 RNGLLMPLLGVIFLKGNSAT MAGE-B1  9 4845 EAELARRSLAQDAPPLPVPG NY-ESO-1 [197-216] [101-120] 10 3523 SVTKGEMLKIVGKRFREHFP MAGE-B2  9 4846 SMQNYVQFLKSSYANVFGDG ODF2 [131-150] [792-811] 10 3524 FLNMLGIYDGKRHLIFGEPR MAGE-B4  9 4847 DVRVTKFKAPQYTMAARVEP ODF3 [223-242] [189-208] 10 3525 IITEDLVQDKYVVYRQVCNS MAGE-B6  9 4848 LHKEKYTLEQALLSASQEIE PEPP2 [331-350] [659-678] 10 3526 PVTEAEMLMIVIKYKDYFPV MAGE-C2  9 4849 IYTRRNYEAANSLIQNLFKV PIWIL1 [161-180] [499-518] 10 3527 KLKMCFNQIQNTYMVQYEKK MORC1  9 4850 LVGNIVITRYNNRTYRIDDV PIWIL2 [861-880] [413-432] 10 3528 SDVPFPFSAQSGAGVPGWGI MUC-1  9 4851 IRKTQKIVIKKREPLNFGIP RCAS1 [1142-1161] [102-121] 10 3529 PLCSTFSDQSAYVSAIRDCF NXF2  9 4852 GAIRKMREDRWAVIAKMDRK SCP-1 [331-350] [946-965] 10 3530 VLVKRKLVHDIIDLIYLNGL NYD-TSPG  9 4853 LQKKIMMETQQQEIASVRKS SCP3a [401-420] [211-230] 10 3531 SLLMWITQCFLPVFLAQPPS NY-ESO-1  9 4854 EKEKRTLLERKLSLENKLLQ se57-1 [157-176] [199-218] 10 3532 PYPYCLCYSKRSRSCGLCDL ODF1  9 4855 EVLEERTRIQFIRWSHTRIF SPATA19 [51-70] [106-125] 10 3533 VVTFGIKHSDYMTPLLVDVE ODF3  9 4856 PTGGSRLASSSEVLASIENI SPO11 [235-254] [35-54] 10 3534 FTCAILCYFNHKSFWSLILS ODF4  9 4857 AFDDIATYFSKKEWKKMKYS SSX-1 [194-213] [24-43] 10 3535 VVLEAPFLVGIEGSLKGSTY OIP5  9 4858 WEKMKASEKIFYVYMKRKYE SSX-2 [113-132] [37-56] 10 3536 EELDESYQKVIELFSVCTNE PBK  9 4859 WEKMKSSEKIVYVYMKLNYE SSX-4 [284-303] [37-56] 10 3537 TDGGLFLLADVSHKVIRNDC PIWIL2  9 4860 NGDDAFVRRPRVGSQIPEKM SSX-5 [370-389] [2-21] 10 3538 WPGFAISVSYFERKLLFSAD PIWIL4  9 4861 NEGTSSIVMEIQKQIEKKEK TAF7L [243-262] [384-403] 10 3539 NNDVCVHFHELHLGLGCPPN PLAC1  9 4862 AAVALVSSSAWSSALGSQTT TAG-1 [45-64] [15-34] 10 3540 SPYLGQMINLRRLLLSHIHA PRAME  9 4863 IMLLERSIMAKEGPLKVAQT TEKT5 [253-272] [374-393] 10 3541 GEVKRQIYVAAFTVQAAAET PSMA  9 4864 KDRTMNLQDIRYILKNDLKD TEX14 [726-745] [497-516] 10 3542 DMNIYELIRGRRYPLSEKKI RAGE-1  9 4865 KDLRRHKIYGRKRRLTSQDS TEX15 [86-105] [933-952] 10 3543 PTPDNVLSAVTPELINLAGA SAGE1  9 4866 SEIELLRSQMANERISMQNL TSGA10 [404-423] [548-567] 10 3544 VECTYISIDQVPRTYAIMIS SCRN1  9 4867 ESEQAALGEEAVLLLDDIMA TSPY1 [52-71] [53-72] 10 3545 LCAALWILMKNPVLICLALS SLCO6A1  9 4868 DSFQDYIKSYLEQASRIWSW TYR [372-391] [458-477] 10 3546 DQRTLAAAAAAQQGFLFPPG SOX-6  9 4869 KIESQRIISGRISGYISEAS ZNF165 [275-294] [201-220] 10 3547 IFYVYMKRKYEAMTKLGFKA SSX-2 10 4870 KLSQKFTKVNFTEIQKLVLD AFP [46-65] [242-261] 10 3548 DLPCVIESLRTLDKKTFYKT TAF7L 10 4871 DAMLRKLYNVMFAKKVPEHV AKAP-3 [155-174] [375-394 10 3549 VTLECFAFGNPVPRIKWRKV TAG-1 10 4872 EVDMLKIRSEFKRKYGKSLY ANXA2 [257-276] [297-316] 10 3550 LVMTKCRLEHELAIKANTLC TEKT5 10 4873 PSRQTAIIVNPPPPEYINTK BRDT [443-462] [4-23] 10 3551 MGTPRIQHLLILLVLGASLL TEX101 10 4874 PAQLAAQMLGKVSSIHSDQS CABYR [1-20] [172-191] 10 3552 PKPHVSDHNALLHLARPKAQ THEG 10 4875 TSKLQRLLAESRQMVTDLEL CCDC62 [290-309] [631-650] 10 3553 VFKEAFHDISHCLKAQMEKI TMEM31 10 4876 LKTEENSFKRLMIVKKEKLA CDCA1 [100-119] [334-353] 10 3554 QYFSDLFNILDTAIIVILLL TPTE 10 4877 SPPASNMLKMEWSREVTTNA CRISP2 [152-171] [52-71] 10 3555 HREKFCYELTGEPLVCSMEG TSP50 10 4878 ALLARKQGAGDSLIAGSAMS CT45 [301-320] [34-53] 10 3556 PEKDKFFAYLTLAKHTISSD TYR 10 4879 TLQTVHFTSEAVELQDMSLL CTCFL [129-148] [81-100] 10 3557 PYSSDNLYQMTSQLECMTWN WT1 10 4880 TDNNLAVYDLSRDILNNFPH CXorf61 [220-239] [53-72] 10 3558 EIHTKEQILELLVLEQFLTI ZNF165 10 4881 LEGGHWLSEKRHRLQAIRDG DKKL1 [81-100] [184-203] 11 3559 VLCSQPVSILSPNTLKEIEA ACRBP 10 4882 SVDSFQIVLDPMLDFYSDKN FAM46D [121-140] [172-191] 11 3560 GSNRNFSVWLGASVVAHLST ACTL8 10 4883 PNTKAEMEMSLAEELNHGRQ FATE1 [330-349] [6-25] 11 3561 HHCHCNYLWDPPNCLIKGYG ADAM29 10 4884 FERIMKYERLARILLQEIPI FBXO39 [640-659] [289-308] 11 3562 DEKQWHDVSVYLGLTNCPSS CCDC62 10 4885 PVKGYELAVTQHQQLAEIDI FSIP1 [457-476] [306-325] 11 3563 SADKMQQLNAAHQEALMKLE CDCA1 10 4886 MAASALRGLPVAGGGESSES GASZ [148-167] [1-20] 11 3564 ARCMRRDFVKHLKKKLKRMI CT45 10 4887 RNRPGMLVLTPTRELALQVE HAGE [170-189] [314-333] 11 3565 CAYGTRYLDDLCVKILREDK CT46 10 4888 EMTKYHSDEYIKFLRSIRPD HDAC2 [51-70] [64-83] 11 3566 GAGAAARAGEGLGLIQEAAS CT47 10 4889 QVNTDSETAVVNVTYSSKDQ KOC1 [175-194] [112-131] 11 3567 CEKLNRFNSELVHEILCLEK CTAGE2 10 4890 SILKNLRRVHPVSTMVKGLY LDHC [101-120] [262-281] 11 3568 LEERLESIISGAALMADSSC CTNNA2 10 4891 LGFSPGPILPSTRKLYEKKL LEMD1 [303-322] [19-38] 11 3569 ESIQFCFIWRAISITPVHKS CXorf48 10 4892 GSDPVRYEFLWGPRALAETS MAGE-A8 [223-242] [266-285] 11 3570 RPPSVAPPPMVAEIPSAGTG DBPC 10 4893 EPRKLITQDLVKLKYLEYRQ MAGE-B3 [186-205] [243-262] 11 3571 KATDSFHTELHPRVAFWIIK DKKL1 10 4894 PVSSSFSYTLLSLFQSSPER MAGE-C1 [154-173] [446-465] 11 3572 SSFYQPSLFPYYNNLYNCPQ DMRT1 10 4895 NAPPAYEKLSAEQSPPPYSP MART1 [211-230] [99-118] 11 3573 QKARCKIPALPLPTILPPIN DPPA2 10 4896 RAKRKLYTSEISSPIDISGQ MPHOSPH1 [74-93] [1775-1794] 11 3574 IVVVVIAVVAGIVVLVISRK EpCAM 10 4897 AFSHTQVIELERKFSHQKYL NKX3.1 [272-291] [130-149] 11 3575 QDIGACVALLSVRVYYKKCP EPHA2 10 4898 FKDPKRAMEAFNLVRESEQL NLRP4 [183-202] [315-334] 11 3576 SYERRQILHLITMMALKVLG FAM46D 10 4899 STWQELILLSSLTVYSKQIF NR6A1 [315-334] [322-341] 11 3577 VSKPFGMLMLSIWILLFVCY FMR1NB 10 4900 PKKPSAFKPAIEMQNSVPNK NY-BR-1 [65-84] [461-480] 11 3578 QVKTIKELGGYVSNLRKICS FTHL17 10 4901 KNYEGMIDNYKSQVMKTRLE ODF2 [142-161] [537-556] 11 3579 CGHLITAVQNVITELPVNSQ GASZ 10 4902 SIPQFPITSDSTISTLETPQ PASD1 [367-386] [668-687] 11 3580 QDEKECLKYQVPLPDSMKLE GATA-3 10 4903 RSVPAGLTLQSVSPQSLQGK PEPP2 [178-197] [595-614] 11 3581 GSLGPLLDGTATLRLVKRQV gp100 10 4904 RRSIAGFVASINEGMTRWFS PIWIL1 [452-471] [641-660] 11 3582 GDVGNYYYGQGHPMKPHRIR HDAC1 10 4905 GSEGTVVQLLANHFRVISRP PIWIL3 [17-36] [119-138] 11 3583 GDIGNYYYGQGHPMKPHRIR HDAC2 10 4906 FEGRTRYSRITGGMEAEVGE PRSS55 [18-37] [59-78] 11 3584 PDVGNFHYGAGHPMKPHRLA HDAC3 10 4907 APRLAEYQAYIDFEMKIGDP SART3 [11-30] [307-326] 11 3585 MTSQRSPLAPLLLLSLHGVA IGFS11 10 4908 ESKQLNVYEIKVNKLELELE SCP-1 [1-20] [632-651] 11 3586 TNYNLFYWYEGLDHALQCVD IL13RA2 10 4909 GEVQNMLEGVGVDINKALLA SCP3a [167-186] [68-87] 11 3587 DAFKSDYFNMPVHMVPTELV JARID1B 10 4910 YESTSAHIIEETEYVKKIRT se57-1 [387-406] [23-42] 11 3588 SVPLWSGVNVAGVALKTLDP LDHC 10 4911 IAKPNNAYEFGQIINALSTR SPAG1 [197-216] [800-819] 11 3589 LLGDNQIMPKTGFLIIVLVM MAGE-A1 10 4912 STAHSRIRKERPISLGIFPL SPAG9 [182-201] [190-209] 11 3590 GILILILSIIFIEGYCTPEE MAGE-A10 10 4913 QDIHVTRDVVKHHLSKSDLL SPATA19 [225-244] [81-100] 11 3591 HPRKLLMQDLVQENYLEYRQ MAGE-A2 10 4914 DVLDRHRESLLAALRAGGRE SPO11 [241-260] [14-33] 11 3592 VFGIELMEVDPIGHLYIFAT MAGE-A3 10 4915 DNDHNRRIQVEHPQMTFGRL SSX-1 [161-180] [85-104] 11 3593 LLGNNQIFPKTGLLIIVLGT MAGE-A4 10 4916 FGRLQGIFPKIMPKKPAEEG SSX-3 [190-209] [101-120] 11 3594 FGIELMEVDPIGHVYIFATC MAGE-A6 10 4917 HRLRERKQLVVYEEISDPEE SSX-4 [162-181] [166-185] 11 3595 RYFPVIFGKASEFMQVIFGT MAGE-A9 10 4918 QIPEKMQKAFDDIAKYFSEK SSX-5 [144-163] [16-35] 11 3596 KSGLLMSLLVVIFMNGNCAT MAGE-B6 10 4919 KIEDLMEMVQKLQKVGSLEP SYCE1 [284-303] [32-51] 11 3597 LQGEEFQSSLQSPVSICSSS MAGE-C1 10 4920 TADELRMISSTFLNLPFQGI TDRD1 [616-635] [807-826] 11 3598 KHLCYCLYRPRKYLYVTSSF MORC1 10 4921 RITIGTLFSVLHERRSQFPV TEX14 [262-281] [328-347] 11 3599 LVLVCVLVALAIVYLIALAV MUC-1 10 4922 FRQPIFSQYASHQPLPQATY TEX15 [1164-1183] [2742-2761] 11 3600 EVLAGLLTNNKKLTYLNVSC NLRP4 10 4923 RRQLDETNDELAQIARERDI TSGA10 [741-760] [330-349] 11 3601 DMYIVQKYISNPLLIGRYKC NYD-TSPG 10 4924 TPESAPEELLAVQVELEPVN TSPY1 [235-254] [104-123] 11 3602 DHRQLQLSISSCLQQLSLLM NY-ESO-1 11 4925 AYPEKMRNRVLLELNSADLD 5T4 [141-160] [324-343] 11 3603 DPCNPCYPCGSRFSCRKMIL ODF1 11 4926 DVAFLLVYREKSNYVGATFQ ADAM2 [231-250] [264-283] 11 3604 VMKTRLEADEVAAQLERCDK ODF2 11 4927 LQTMKQEFLINLVKQKPQIT AFP [550-569] [545-564] 11 3605 CSPGPRYNVNPKILRTGKDL ODF3 11 4928 YDSDSWAEDLIVSALLLIQY AKAP-3 [64-83] [518-537] 11 3606 TSAHVMSMGLLHFYKSRSCS ODF4 11 4929 KEFADSISKGLMVYANQVAS AKAP-4 [126-145] [323-342] 11 3607 QGQRGHTSMKAVYVEPAAAA PASD1 11 4930 AQRQDIAFAYQRRTKKELAS ANXA2 [213-232] [66-85] 11 3608 VSHKVIRNDCVLDVMHAIYQ PIWIL2 11 4931 YNPPDHEVVTMARMLQDVFE BRDT [380-399] [351-370] 11 3609 DTVQRLTYCLCHMYYNLPGI PIWIL3 11 4932 EYSDKTTQFPSVYAVPGTEQ CABYR [827-846] [114-133] 11 3610 SAGSGQSPMTVLCSIDWFMV PLAC1 11 4933 KEAQEQEFLSLQEEFQKLEK CAGE1 [18-37] [477-496] 11 3611 LLFSVLLLLSLVTGTQLGPR PRSS55 11 4934 TQYDLSEFENIGAIGLELWQ CALR3 [2-21] [287-306] 11 3612 STAPPWLRHMAAAGISSTIT SAGE1 11 4935 NKHNELRKAVSPPASNMLKM CRISP2 [646-665] [42-61] 11 3613 PAEVGDLFYDCVDTEIKFFK SCRN1 11 4936 SVRSRLYVGREKKLALMLSG cTAGE5 [395-414] [65-84] 11 3614 PIYLENQFILTPTVATTLAG SLCO6A1 11 4937 DSKLAVSLAETTGLIKLEEE CTCFL [407-426] [166-185] 11 3615 GDNYPVQFIPSTMAAAAASG SOX-6 11 4938 SGLINSNTDNNLAVYDLSRD CXorf61 [300-319] [46-65] 11 3616 AQNGCLYVHSSVAQWRKCLH SPAG9 11 4939 HKDWIFSIAWISDTMAVSGS DCAF12 [976-995] [183-202] 11 3617 NDISCMLKVSRRSLHILSTS SPO11 11 4940 LVIAEMMELGSRSRGASQKK FATE1 [155-174] [32-51] 11 3618 ISYVYMKRNYKAMTKLGFKV SSX-1 11 4941 EDYFSHHLAVYNSPQFKKTM FBXO39 [46-65] [201-220] 11 3619 VMTKLGFKVTLPPFMRSKRA SSX-4 11 4942 STEPGSFKVDTASNLNSGKE FSIP1 [57-76] [35-54] 11 3620 IIYVYMKRKYEAMTKLGFKA SSX-5 11 4943 KMEEKYQLTARLNMEQLLQS Glypican- [46-65] 3 [76-95] 11 3621 EILSKKQETLRILRLHCQEK SYCE1 11 4944 IPEELVSMAERFKAHQQKRE HAGE [100-119] [613-632] 11 3622 ISNPGLFTSLGPPLRSTTCH TDRD1 11 4945 QDTDTKITISPLQELTLYNP KOC1 [152-171] [304-323] 11 3623 LIIKAGTETAILATKGCIPE TEX101 11 4946 AAYNKLLNNNLSLKYSQTGY KU-CT-1 [65-84] [542-561] 11 3624 ATSREFTNAYKLPLAVGPPS TEX14 11 4947 LDGAQDSDDSEELNIILQGN LEMD [779-798] [58-77] 11 3625 QRFRGMLWFDLSLLPELVQC TEX15 11 4948 DGSFSFKLLNQLGMIEEPRL LIPI [2086-2105] [373-392] 11 3626 HLFALSTLYFYKFFLPTILS TMEM31 11 4949 LLTQNWVQEKYLVYRQVPGT MAGE-A11 [126-145] [358-377] 11 3627 PSSRPRLLWQTPTTQTLPST TSP50 11 4950 EEQETASSSSTLVEVTLREV MAGE-A12 [66-85] [34-53] 11 3628 NLNSHLIRHQRIHTREKPYE ZNF165 11 4951 VAELVRFLLRKYQIKEPVTK MAGE-A8 [410-429] [116-135] 12 3629 NRKVSRMRCLQNETYSALSP ACRBP 11 4952 LNGASRRLELVFGLDLKEDN MAGE-B1 [501-520] [150-169] 12 3630 QRVAPEMFFSPQVFEQPGPS ACTL8 11 4953 NSATEEEIWEFLNMLGVYDG MAGE-B2 [252-271] [216-235] 12 3631 YVGKFLLQIPRATIIYANIS ADAM2 11 4954 SKMKVLEFWAKVNKTVPSAF MAGE-B3 [549-568] [284-303] 12 3632 LLHCLGVFLSCSGHIQDEHP ADAM29 11 4955 FRKVSQRTELVFGLALKEVN MAGE-B4 [6-25] [151-170] 12 3633 LAVSVILRVAKGYQELLEKC AFP 11 4956 PHSSPPYYEFLWGPRAHSES MAGE-C2 [365-384] [290-309] 12 3634 CPGSTMGYMAQSTQYEKCGG AKAP-4 11 4957 QKFGDFLQHSPSILQSKAKK MPHOSPH1 [570-589] [1731-1750] 12 3635 QQDTKGDYQKALLYLCGGDD ANXA2 11 4958 HQKYLSAPERAHLAKNLKLT NKX3.1 [320-339] [145-164] 12 3636 MISSKPRLVVPYGLKTLLEG CABYR 11 4959 SDEGMEVIERLIYLYHKFHQ NR6A1 [1-20] [362-381] 12 3637 LIHCSGEMLKFTEKSLAKSI CAGE1 11 4960 PSLSQEQQEMVQAFSAQSGM NXF2 [193-212] [566-585] 12 3638 ILHFKNKYHENKKLIRCKVD CALR3 11 4961 IEVHNKASLTPLLLSITKRS NY-BR-1 [147-166] [109-128] 12 3639 LNFNVENSQELIQMYDSKME CCDC62 11 4962 LKEKIVLTHNRLKSLMKILS OIP5 [299-318] [199-218] 12 3640 GDCEGVIFEGEPMYLNVGEV CT46 11 4963 MQKLGFGTGVNVYLMKRSPR PBK [196-215] [35-54] 12 3641 GFVPPPLAPIRGLLFPVDTR CTAGE2 11 4964 YNVTSDYAVHPMSPVGRTSR PEPP2 [659-678] [128-147] 12 3642 PGFVPPPLAPIRGPLFPVDA cTAGE5 11 4965 VGQSIHREPNLSLSNRLYYL PIWIL1 [689-708] [842-861] 12 3643 GCGIHAIELNPSRTLLATGG DCAF12 11 4966 VAGSMGFNVDYPKIIKVQEN PIWIL4 [140-159] [509-528] 12 3644 LQFHAGQAWVPTTHRRMISL DPPA2 11 4967 NLRRLLLSHIHASSYISPEK PRAME [241-260] [261-280] 12 3645 KFITSILYENNVITIDLVQN EpCAM 11 4968 EENSRLLQERGVAYINADSS PSMA [179-198] [436-455] 12 3646 TWDQVITLDQVLDEVIPIHG FAM46D 11 4969 KRRGPAYVMELPKLKLSGVV RAGE-1 [10-29] [339-358] 12 3647 YFKIWAFLDVSFVERILKSQ FBXO39 11 4970 QVISVTFEKALNAGFIQATD SART3 [370-389] [397-416] 12 3648 ISLILVCLPIYCRSLFWRSE FMR1NB 11 4971 DSDPALQKVNFLPVLEQVGN SCP-1 [193-212] [63-82] 12 3649 SNLRKICSPEAGLAEYLFDK FTHL17 11 4972 DVIEGKTAVIEKRRKKRSSA SCP3a [154-173] [41-60] 12 3650 AARDGHTQVVALLVAHGAEV GASZ 11 4973 EAQNKELKTQVALSSETPRT se57-1 [156-175] [289-308] 12 3651 RDGTGHYLCNACGLYHKMNG GATA-3 11 4974 DLNKVILLDPSIIEAKMELE SPAG1 [277-296] [713-732] 12 3652 RLAQSYLKEPMIVYVGTLDL HAGE 11 4975 DIMRDRIEQVRRSISRLTDV SPATA19 [436-455] [134-153] 12 3653 LPYSEYFEYFAPDFTLHPDV HDAC3 11 4976 PNRGNQVERPQMTFGRLQGI SSX-2 [323-342] [88-107] 12 3654 IFCIALILGAFFYWRSKNKE IGFS11 11 4977 AQIPEKIQKAFDDIAKYFSK SSX-3 [255-274] [15-34] 12 3655 DLNKGIEAKIHTLLPWQCTN IL13RA2 11 4978 KDKLKIDLLPDGRHAVVEVE TAF7L [96-115] [126-145] 12 3656 LYALPCVLSQTPLLKDLLNR JARID1B 11 4979 DFSTKSVFSKFAQLNLAAED TAG-1 [849-868] [214-233] 12 3657 PCDLPLRLLVPTQFVGAIIG KOC1 11 4980 LQVRGAEASRLWASRLTDDS TEKT5 [193-212] [100-119] 12 3658 WLIHGYRPVGSIPLWLQNFV LIPI 11 4981 EDIPEISRLSISQKLPSTTM THEG [99-118] [97-116] 12 3659 EEGPSTSCILESLFRAVITK MAGE-A1 11 4982 MDVLLRVFVERRQQYFSDLF TPTE [85-104] [139-158] 12 3660 PQSAQIACSSPSVVASLPLD MAGE-A10 11 4983 DDERMEQMSNMTLMKETIST TSGA10 [84-103] [155-174] 12 3661 CIPEEVMWEVLSIMGVYAGR MAGE-A11 11 4984 YEVEAYRRRHHNSSLNFFNW TSPY1 [328-347] [241-260] 12 3662 MVELVHFLLLKYRAREPVTK MAGE-A2 11 4985 FLLHHAFVDSIFEQWLRRHR TYR [113-132] [386-405] 12 3663 EFQAALSRKVAELVHFLLLK MAGE-A3 11 4986 GATLKGVAAGSSSSVKWTEG WT1 [104-123] [244-263] 12 3664 FPDIFSKASECMQVIFGIDV MAGE-A8 12 4987 DERQNRSFEGMVVAALLAGR 5T4 [150-169] [188-207] 12 3665 RRKLLMPLLGVIFLNGNSAT MAGE-B2 12 4988 QKATDIMDAMLRKLYNVMFA AKAP-3 [200-219] [368-387] 12 3666 NCAREEEIWEFLNMLGIYDG MAGE-B4 12 4989 ELEHLQTVKNISPLQILPPS BRDT [213-232] [743-762] 12 3667 AYAETTKMRVLRVLADSSNT MAGE-B6 12 4990 QEKRGAVYEAVTTINQEIQK CDCA1 [363-382] [381-400] 12 3668 LGLSNIKFRPGSVVVQLTLA MUC-1 12 4991 QLQVQREIVNKHNELRKAVS CRISP2 [1087-1106] [33-52] 12 3669 DRFLYTFYFCCRELRELPPT NLAP4 12 4992 MMQKPGSNAPVGGNVTSSFS CT45 [180-199] [84-103] 12 3670 MSVPPHYQYIPHLFSYSGHS NA6A1 12 4993 QLLAERTKEQLFFVETMSGD CTCFL [217-236] [190-209] 12 3671 LRHTPYSIRCERRMKWHSED NXF2 12 4994 ADMADVMRLLSHLKIVEEAL CTNNA2 [76-95] [141-160] 12 3672 LLWKKIHRMVILTILAIAPS NYD-TSPG 12 4995 VEEDKPHYGLRAIKVDVVPR CXorf48 [340-359] [80-99] 12 3673 RRDIKKVDRELRQLRCIDEF ODF1 12 4996 SMVENKLVELEHTLLSKGFR CXorf61 [12-31] [85-104] 12 3674 LPFQWRITHSFRWMAQVLAS ODF4 12 4997 VPPPRFRPRYRRPFRPRPRQ DBPC [66-85] [272-291] 12 3675 LQEPCVAFNQQQLVQQEQHL PASD1 12 4998 KMTDNKTGEVLISENVVASI DKKL1 [470-489] [108-127] 12 3676 LSHSPWAVKKINPICNDHYR PBK 12 4999 PQYSMALAADSASGEVGNPL DMRT1 [56-75] [229-248] 12 3677 TYKLCHIYYNWPGVIRVPAP PIWIL1 12 5000 GVPFRTVSEWLESIKMQQYT EPHA2 [812-831] [903-922] 12 3678 CKYAHKLAFLSGHILHHEPA PIWIL2 12 5001 VAQTSLEEFNVLEMEVMARQ FATE1 [944-963] [121-140] 12 3679 SEKILMQDHICQPVSAADWS PIWIL4 12 5002 KHNQDFIKRNIELAKESANP FSIP1 [451-470] [249-268] 12 3680 CKKLKIFAMPMQDIKMILKM PRAME 12 5003 ARRDLKVFGNFPKLIMTQVS Glypican- [210-229] 3 [201-220] 12 3681 EGNYTLRVDCTPLMYSLVHN PSMA 12 5004 SYTWDFGDSSGTLISRALVV gp100 [457-476] [257-276] 12 3682 TVPPAFINMAATGVSSMSTR SAGE1 12 5005 PYNDYFEYFGPDFKLHISPS HDAC1 [600-619] [329-348]; HDAC2 [330-349] 12 3683 RNCPWTVALWSRYLLAMERH SART3 12 5006 RQQTDMAVNWAGGLHHAKKS HDAC2 [373-392] [127-146] 12 3684 GVRCICSQLSLTTKMDAEHP SCRN1 12 5007 LQEPSDLRAVLLINSKSYVS KU-CT-1 [183-202] [592-611] 12 3685 TLIFSGFSGVPIVLAMTRVV SLCO6A1 12 5008 GETRLALVQRNVAIMKSIIP LDHC [588-607] [103-122] 12 3686 AAAQQGFLFPPGITYKPGDN SOX-6 12 5009 AREPFTKAEMLGSVIRNFQD MAGE-A12 [283-302] [126-145] 12 3687 SKAERFKMMLTLISKGQKEL SPAG1 12 5010 DGREHTVYGEPRKLLTQDWV MAGE-A4 [877-896] [233-252] 12 3688 RYDEEVVKELMPLVVAVLEN SPAG9 12 5011 AEMLESVIKNYKRYFPVIFG MAGE-A9 [41-60] [132-151] 12 3689 SFEAHHLTVPAIRWLGLLPS SPO11 12 5012 ETTKMKVLEFLAKMNGATPR MAGE-B1 [297-316] [279-298] 12 3690 HNRRIQVEHPQMTFGRLHRI SSX-1 12 5013 LKKPQRALSTTTSVDVSYKK MAGE-B3 [88-107] [62-81] 12 3691 PNRGNQVEHPQMTFGRLQGI SSX-5 12 5014 LQIPVSPSSSSTLLSLFQSF MAGE-C1 [88-107] [233-252] 12 3692 KDLGEARTICEALQKELDSL SYCE1 12 5015 KDYFPVILKRAREFMELLFG MAGE-C2 [72-91] [175-194] 12 3693 TPWMDYEFRVIASNILGTGE TAG-1 12 5016 LKSGSMRIGKDFILFTKKEE MORC1 [676-695] [103-122] 12 3694 LRLRETQDTLQLLVMTKCRL TEKT5 12 5017 EENIGILPRTLNVLFDSLQE MPHOSPH1 [431-450] [166-185] 12 3695 FCNDKDSLSQFWEFSETTAS TEX101 12 5018 RAHLAKNLKLTETQVKIWFQ NKX3.1 [113-132] [154-173] 12 3696 EHSSKLRHPYLLQLMAVCLS TEX14 12 5019 SLVEKTPDEAASLVEGTSDK NY-BR-1 [297-316] [263-282] 12 3697 QRILTVDSFAASSTVPHCEQ TEX15 12 5020 FKLENERLKASFAPMEDKLN 0DF2 [1357-1376] [504-523] 12 3698 IPRSSLEYRASSRLKELAAP THEG 12 5021 KASQPSFSIKGRSKLGGFSD ODF3 [219-238] [155-174] 12 3699 PTILSLSFFILLVLLLLLFI TMEM31 12 5022 DQASFTTSMEWDTQVVKGSS OIP5 [141-160] [29-48] 12 3700 LVDVVYIFFDIKLLRNIPRW TPTE 12 5023 TEADRVIQRTNSMQQLEQWI PEPP2 [171-190] [399-418] 12 3701 PEAVARRWPWMVSVRANGTH TSP50 12 5024 DVSHKLLRIETAYDFIKRTS PIWIL3 [117-136] [283-302] 12 3702 QALVCASAKEGTAFRMEAVQ TSPY1 12 5025 QEAQPLQPSHFLDISEDWSL PLAC1 [27-46] [184-203] 12 3703 EAPAFLPWHRLFLLRWEQEI TYR 12 5026 LTSPSMEIKEVASIILHKDF PRSS55 [203-222] [129-148] 12 3704 RNQGYSTVTFDGTPSYGHTP WT1 12 5027 YDPDERIAAHQALQHPYFQE RAGE-1 [145-164] [268-287] 12 3705 CSECGRAFSQSSNLSQHQRI ZNF165 12 5028 FVPPRSSSSQVSAVKPQTLG SCP-1 [458-477] [10-29] 13 3706 MNPEAIHFSGVKIFSNCSFE ADAM2 12 5029 RKRLEMYTKASLKTSNQKIE SCP3a [338-357] [89-108] 13 3707 TMRSGFMQNEITCRMEFEEI ADAM29 12 5030 NLVQRMEKEKRTLLERKLSL se57-1 [161-180] [193-212] 13 3708 SILDSYQCTAEISLADLATI AFP 12 5031 EQVRRSISRLTDVSAQDFSM SPATA19 [30-49] [141-160] 13 3709 GDLENAFLNLVQCIQNKPLY ANXA2 12 5032 PNRGNQVQRPQMTFGRLQGI SSX-3 [250-269] [88-107] 13 3710 LQCSNLYLEKRVKELQMKIT CAGE1 12 5033 KQKNEKLISLQEQLQRFLKK TAF7L [326-345] [443-462] 13 3711 LYPNPKPEVLHMIYMRALQI CDCA1 12 5034 IISDVLIDEHLVLKSASPHK TDRD1 [36-55] [883-902] 13 3712 CGIAYCPNQDSLKYYYVCQY CRISP2 12 5035 DKKSENIASLGESLAMKEKT TSGA10 [150-169] [278-297] 13 3713 VTSRLYVRREKKFAVALSGL CTAGE2 13 5036 LADLSPFAFSGSNASVSAPS 5T4 [36-55] [154-173] 13 3714 CFRQKQLLNAHFRKYHDANF CTCFL 13 5037 SPNTLKEIEASAEVSPTTMT ACRBP [522-541] [131-150] 13 3715 GVKLVRMAATQIDSLCPQVI CTNNA2 13 5038 IERGRILNWEGVQYLWSFVL ACTL8 [444-463] [67-86] 13 3716 SFCGDYGMIDESIYFSSDVV CXorf48 13 5039 PPSKKSFFYKEVFESRNGDY AKAP-3 [45-64] [234-253] 13 3717 ATVPATAAGVVAVVVPVPAG DBPC 13 5040 DIMEAMLKRLVSALIGEEKE AKAP-4 [16-35] [421-440] 13 3718 VVHGRLLSADTKGWVALQFH DPPA2 13 5041 DEIEIDFETLKASTLRELEK BRDT [225-244] [550-569] 13 3719 MAPPQVLAFGLLLAAATATF EpCAM 13 5042 KTTSGMSKKSVESVKLAQLE CABYR [1-20] [350-369] 13 3720 GMTKYDYLMTLHGVVNESTV FAM46D 13 5043 QDWEKHFLDASTSKQSDWNG CALR3 [292-311] [226-245] 13 3721 VLTKKFQVTMRGLLSCLSKS FBXO39 13 5044 EKQDYKQKLKALKIEVNKLK CCDC62 [103-122] [204-223] 13 3722 RAMRVAHLELATYELAATES FMR1NB 13 5045 ESPDLSISHSQVEQLVNKTS CT46 [17-36] [306-325] 13 3723 PASSSSLSGGHASPHLFTFP GATA-3 13 5046 TLEGERNQIYIQLSEVDKTK cTAGE5 [135-154] [328-347] 13 3724 LQVTRIFLQALNLGIEVINT Glypican- 13 5047 SRDILNNFPHSIARQKRILV CXorf61 3 [63-82] [223-242] 13 3725 FYTTDRVMTVSFHKYGEYFP HDAC1 13 5048 VVDVQTSQITKIPILKDREP DCAF12 [187-206]; [114-133] HDAC2 [188-207] 13 3726 NANIPSIYANGTHLVPGQHK IGFS11 13 5049 EVLISENVVASIQPAEGSFE DKKL1 [351-370] [116-135] 13 3727 VIFVTGLLLRKPNTYPKMIP IL13RA2 13 5050 GISHPIPLPSAAELLVKREN DMRT1 [355-374] [132-151] 13 3728 ENDQVVVKITGHFYACQVAQ KOC1 13 5051 DLAPDTTYLVQVQALTQEGQ EPHA2 [531-550] [496-515] 13 3729 IQSAYEIIKLKGYTSWAIGL LDHC 13 5052 KAAGSASAKRVWNMTATRPK FATE [235-254] [57-76] 13 3730 FNTQKKTVWLIHGYRPVGSI LIPI 13 5053 SKTLGIGRLKRPSFLDDPLY FSIP1 [91-110] [524-543] 13 3731 EALNMMGLYDGMEHLIYGEP MAGE-A10 13 5054 EAGLAEYLFDKLTLGGRVKE FTHL17 [248-267] [163-182] 13 3732 KVLHHLLKISGGPHISYPPL MAGE-A12 13 5055 PVNSQKITLEWASPQNFTSV GASZ [285-304] [382-401] 13 3733 EQQTASSSSTLVEVTLGEVP MAGE-A2 13 5056 MEVTVYHRRGSRSYVPLAHS gp100 [35-54] [184-203] 13 3734 AEMLGSVVGNWQYFFPVIFS MAGE-A3 13 5057 KALENFKTGKVRILIATDLA HAGE [133-152]; [528-547] MAGE-A6 [133-152] 13 3735 WEAGMLMHFILRKYKMREPI MAGE-B1 13 5058 QNSRQYLDQIRQTIFENLKM HDAC3 [110-129] [349-368] 13 3736 VVFGLELNKVNPNGHTYTFI MAGE-B2 13 5059 SIPVHLNSLPRLETLVAEVQ JARID1B [162-181] [1048-1067] 13 3737 LCNDVLAMKRSSSLPSWKSL MORC1 13 5060 THEDKIVRRNATMIFGILAS KU-CT-1 [757-776] [77-96] 13 3738 MTPGTQSPFFLLLLLTVLTV MUC-1 13 5061 APEEEIWEELSVMEVYDGRE MAGE-A1 [1-20] [209-228] 13 3739 AELFALLCRLADELLFRQIA NR6A1 13 5062 TVRPADLTRVIMPLEQRSQH MAGE-A11 [281-300] [100-119] 13 3740 HENENYLLHENCMLKKEIAM NY-BR-1 13 5063 PVIFGKASESLKMIFGIDVK MAGE-A4 [1038-1057] [149-168] 13 3741 SQALGSLRTTTPAFTLNIPS NYD-TSPG 13 5064 TKAEMLESVIKNYKNHFPDI MAGE-A8 [12-31] [134-153] 13 3742 ENRYDCLGSKKYSYMNICKE ODF1 13 5065 EPRKLLTQDWVQENYLEYRQ MAGE-A9 [155-174] [240-259] 13 3743 RTKAFRVDSTPGPAAYMLPM ODF3 13 5066 QSRTDPLIMKTNMLVQFLME MAGE-B3 [127-146] [105-124] 13 3744 KVTFIFSTLMLFPINIWIFE ODF4 13 5067 TTAMTSAYSRATSSSSSQPM MAGE-B4 [151-170] [327-346] 13 3745 KSSQRKLNWIPSFPTYDYFN PASD1 13 5068 EYKPYFPQILNRTSQHLVVA MAGE-B6 [15-34] [228-247] 13 3746 MARGLKYLHQEKKLLHGDIK PBK 13 5069 PLQSPVISFSSSTSLSPFSE MAGE-C1 [150-169] [850-869] 13 3747 FVASINLTLTKWYSRVVFQM PIWIL2 13 5070 EEEEEASSASSTLYLVFSPS MAGE-C2 [760-779] [34-53] 13 3748 MSLKGHLQSVTAPMGITMKP PIWIL3 13 5071 KKIIETMSSSKLSNVEASKE MPHOSPH1 [523-542] [1749-1768] 13 3749 PSLSHCSQLTTLSFYGNSIS PRAME 13 5072 LSSELGDLEKHSSLPALKEE NKX3.1 [400-419] [184-203] 13 3750 VLPGLTYLTVAGIPAMSTRD SAGE1 13 5073 KFKEHLKQMTLQLELKQIPW NLRP4 [554-573] [25-44] 13 3751 FIDENVATHSAGIYLGIAEC SLCO6A1 13 5074 SETLKHLVLQFLQQYYSIYD NXF2 [253-272] [385-404] 13 3752 CWPTGGATVAEARVYRDARG SOX-6 13 5075 ELSKSMESMRGHLQAQLRSK ODF2 [594-613] [337-356] 13 3753 KEACAHLLAITAPKDLPMFL SPAG1 13 5076 IVNASEMDIQNVPLSEKIAE OIP5 [822-841] [179-198] 13 3754 AGSIYREFERLIGRYDEEVV SPAG9 13 5077 YSPQRTYRSEVSSPIQRGDV PEPP2 [28-47] [556-575] 13 3755 YVYMKRKYEAMTKLGFKAIL SSX-3 13 5078 LQFYNIIFRRLLKIMNLQQI PIWIL1 [48-67] [209-228] 13 3756 IKATKPLLMEQYCSIKIVDI TDRD1 13 5079 DYPKIIKVQENPAAFVRAIQ PIWIL4 [396-415] [518-537] 13 3757 KCCGLTSLPAVQAPVIQECY TEKT5 13 5080 LYSEELFPEELSVVLGTNDL PRSS55 [17-36] [110-129] 13 3758 EVKGCTAMIGCRLMSGILAV TEX101 13 5081 SFDSLFSAVKNFTEIASKFS PSMA [181-200] [628-647] 13 3759 ILKKGIYVDAVNSLGQTALF TEX14 13 5082 YVMELPKLKLSGVVRLSSYS RAGE-1 [42-61] [345-364] 13 3760 PTLRSLLWYDETLYAELLGK TEX15 13 5083 AIVEAARLEKVHSLFRRQLA SART3 [1714-1733] [237-256] 13 3761 KRYVAYFAQVKHLYNWNLPP TPTE 13 5084 EETRQVYMDLNNNIEKMITA SCP-1 [391-410] [205-224] 13 3762 PRTSAPSRAGALLLLLLLLR TSP50 13 5085 LQQSRIVQSQRLKTIKQLYE SCP3a [14-33] [161-180] 13 3763 YRVPERLRQGFCGVGRAAQA TSPY1 13 5086 DRDEAWVLETIGKYWAAEKV SCRN1 [9-28] [161-180] 13 3764 LAVLYCLLWSFQTSAGHFPR TYR 13 5087 KQEDSKQLLQVNKLEKEQKL se57-1 [3-22] [148-167] 14 3765 YASWFESFCQFTHYRCSNHV ACRBP 13 5088 FLPITSSDIDVVESEAVSVL SPATA19 [96-115] [20-39] 14 3766 MAARTVIIDHGSGFLKAGTA ACTL8 13 5089 ADSKMKAEIQALTFLSSDYL SPO11 [1-20] [362-381] 14 3767 SKPMRWPFFLFIPFFIIFCV ADAM2 13 5090 LQIEEEKNKQRQLRLAFEEQ SYCE1 [682-701] [142-161] 14 3768 NIVDSILDVIGVKVLLFGLE ADAM29 13 5091 GSIPGFLISSGMSSHKQGHT TAF7L [230-249] [295-314] 14 3769 LTSSELMAITRKMAATAATC AFP 13 5092 TDGRHFVSQTTGNLYIARTN TAG-1 [442-461] [179-198] 14 3770 TNSLQKQLQAVLQWIAASQF AKAP-4 13 5093 EDTTLTITVPAVSRRVEELS THEG [767-786] [179-198] 14 3771 ASALKSALSGHLETVILGLL ANXA2 13 5094 ENELDSAHSEIELLRSQMAN TSGA10 [84-103] [540-559] 14 3772 NGKSQYYIMFGPDICGFDIK CALR3 13 5095 IQDVRRVPGVAPTLVRSASE WT1 [123-142] [297-316] 14 3773 KALESNQMECQTALQKTQLQ CCDC62 13 5096 EHGQEIFQKKVSPPGPALNV ZNF165 [94-113] [142-161] 14 3774 PRYNVAEIVIHIRNKILTGA CDCA1 14 5097 GYHYRYEINADPRLTNLSSN 5T4 [7-26] [398-417] 14 3775 SREVTTNAQRWANKCTLQHS CRISP2 14 5098 MDTSTDPVRVLSWLRRDLEK AKAP-3 [64-83] [32-51] 14 3776 EHQSLVLVKALLAVSVSCIT CT46 14 5099 PNHHQLAFNYQELEHLQTVK BRDT [23-42] [732-751] 14 3777 GTGVQSTFTTFYEVDCDVID CTNNA2 14 5100 DQAPEVTLQADIEVMSTVHI CABYR [810-829] [274-293] 14 3778 IHTEEVCITSVHGRNGVIDY CXorf48 14 5101 SDEAKSIRDVPTLLGAKLDK CAGE1 [175-194] [674-693] 14 3779 FYLLLASSILCALIVFWKYR CXorf61 14 5102 SKSLKSQVAEAKMTFKRFQA CTAGE2 [3-22] [150-169] 14 3780 RNYFSDIDFFPNAVYTHCYD DCAF12 14 5103 AEAKMTFKIFQMNEERLKIA cTAGE5 [408-427] [188-207] 14 3781 QASGVRWCVVHGRLLSADTK DPPA2 14 5104 AFQDSVLEEEVELVLAPSEE CTCFL [217-236] [55-74] 14 3782 GIAAGMKYLANMNYVHRDLA EPHA2 14 5105 PQRPRNRPYFQRARQQAPGP DBPC [722-741] [316-335] 14 3783 LHLITMMALKVLGELNILPN FAM46D 14 5106 LFSAPMDFRGLPGNYHKEEN DKKL1 [322-341] [71-90] 14 3784 LIIAVLVSASIANLWLWMNQ FATE1 14 5107 VENTPDLVSDSTYYSSFYQP DMRT1 [164-183] [197-216] 14 3785 LPIYCRSLFWRSEPADDLQR FMR1NB 14 5108 TVNGEQLDLDPGQTLIYYVD EpCAM [200-219] [234-253] 14 3786 YTSYLYLSMAFYFNRDDVAL FTHL17 14 5109 KYRKLIESELSYFVIVYSVM FBXO39 [30-49] [423-442] 14 3787 VSTWNSRILKRTAITICGFG GASZ 14 5110 DIEDVTPVFPQLSRSIISKL FSIP1 [443-462] [433-452] 14 3788 RAMLGTHTMEVTVYHRRGSR gp100 14 5111 SSFNPAALSRHMSSLSHISP GATA-3 [176-195] [390-409] 14 3789 KIKNIQSTTNTTIQIIQEQP HAGE 14 5112 EAFEIVVRHAKNYTNAMFKN Glypican- [89-108] 3 [113-132] 14 3790 EAIFKPVMSKVMEMFQPSAV HDAC1 14 5113 GEARLREMEALQSLRLANEG JARID1B [238-257] [1146-1165] 14 3791 FCSRYTGASLQGATQLNNKI HDAC3 14 5114 GGLKKLLSFAENSTIPDIQK KU-CT-1 [103-122] [274-293] 14 3792 MPATNVSIFINNTQLSDTGT IGFS11 14 5115 GSDPRSFPLWYEEALKDEEE MAGE-A10 [98-117] [320-339] 14 3793 WEGEDLSKKTLLRFWLPFGF IL13RA2 14 5116 REDSGDFGLQVSTMFSEDDF MAGE-A11 [331-350] [23-42] 14 3794 SMNLQAHLIPGLNLNALGLF KOC1 14 5117 APEEKIWEELSMLEVFEGRE MAGE-A2 [357-376] [216-235] 14 3795 VIGSGCNLDSARFRYLIGEK LDHC 14 5118 KASSSLQLVFGIELMEVDPI MAGE-A3 [158-177] [153-172] 14 3796 LETNCNFISFPCRSYKDYKT LIPI 14 5119 AASSSSTLIMGTLEEVTDSG MAGE-A8 [285-304] [38-57] 14 3797 PARYEFLWGPRALAETSYVK MAGE-A1 14 5120 EEPSSSVDPAQLEFMFQEAL MAGE-A9 [259-278] [89-108] 14 3798 CAPEEKIWEELSVLEASDGR MAGE-A12 14 5121 GEPRKFITQDLVQEKYLKYE MAGE-B1 [215-234] [239-258] 14 3799 ELVTKAEMLERVIKNYKRCF MAGE-A4 14 5122 AETSKMKVLEFLAKVNGTTP MAGE-B2 [129-148] [281-300] 14 3800 VAKLVHFLLLKYRAREPVTK MAGE-A6 14 5123 NSNPARYEFLWGPRAHAETS MAGE-B3 [113-132] [265-284] 14 3801 AGARPRVAARRGTTAMTSAY MAGE-B4 14 5124 PHLYEDALIDEVERALRLRA MAGE-B6 [315-334] [388-407] 14 3802 EEVIWEVLNAVGVYAGREHF MAGE-C2 14 5125 SDEQGMSQNRLLILILSIIF MAGE-C1 [246-265] [989-1008] 14 3803 KCGTLLVIYNLKLLLNGEPE MORC1 14 5126 TSASGSASGSASTLVHNGTS MUC-1 [193-212] [959-978] 14 3804 TTQKEFFQGCIMQPVKDLLK MPHOSPH1 14 5127 EAFSRASLVSVYNSYPYYPY NKX3.1 [123-142] [203-222] 14 3805 NRFPDLMMCLPEIRYIAGKM NR6A1 14 5128 MAASFFSDFGLMWYLEELKK NLRP4 [435-454] [1-20] 14 3806 QTERMLCFSVNGVFKEVEGQ NXF2 14 5129 RADPVDLEFSVDQVDSVDQE PASD1 [491-510] [298-317] 14 3807 INLVDVYGNTALHYAVYSEI NY-BR-1 14 5130 SATEVGRIQASPLPRSVDLS PIWIL4 [76-95] [17-36] 14 3808 FSDFKDFIFDDMYIVQKYIS NYD-TSPG 14 5131 KYADKIYSISMKHPQEMKTY PSMA [225-244] [606-625] 14 3809 IEAARRQFQSQLADLQQLPD ODF2 14 5132 YVEIWQAYLDYLARRVDFKQ SART3 [582-601] [417-436] 14 3810 TKPCAPVVTFGIKHSDYMTP ODF3 14 5133 MEKQKPFALFVPPRSSSSQV SCP-1 [229-248] [1-20] 14 3811 KSFWSLILSHPSGAVSCSSS ODF4 14 5134 IEKARKKASSAGVVEDMGGE SCP3a [205-224] [50-69] 14 3812 PLGPAGLGAEEPAAGPQLPS OIP5 14 5135 QDKRIENLREKVNILEAQNK se57-1 [49-68] [274-293] 14 3813 GYRAFTEANDGSLCLAMEYG PBK 14 5136 LKNNLIEKDPSLVYQHLLYL SPAG1 [99-118] [857-876] 14 3814 GILGSILLPSFQIALLTSED PEPP2 14 5137 KTRDGGSVVGASVFYKDVAG SPAG9 [209-228] [699-718] 14 3815 LRDWGLSFDSNLLSFSGRIL PIWIL1 14 5138 PDVENEVKALLRSDAEAVST TAF7L [438-457] [259-278] 14 3816 TITSCEWVDFYLLAHHVRQG PIWIL2 14 5139 WKRLGWSESSRIIVLDQSDL TEX14 [880-899] [1476-1495] 14 3817 TYCLCHMYYNLPGIIRVPAP PIWIL3 14 5140 PSSRILQLSKPKAPATLLEE THEG [833-852] [264-283] 14 3818 TWKLPTLAKFSPYLGQMINL PRAME 14 5141 DLKIQIEMEKKVVFSTISLG TPTE [243-262] [430-449] 14 3819 SVLLLLSLVTGTQLGPRTPL PRSS55 14 5142 KVITKEYLVNITEYRASHST TSPY1 [5-24] [214-233] 14 3820 PLLTTNLSPQCLSLLHAMVA RAGE-1 14 5143 FINHQIIYAGEKNHQYGKSF ZNF165 [248-267] [307-326] 14 3821 RRFGQNYERIFILLEEVQGS SAGE1 15 5144 EDVVLRWSQEFSTLTLGQFG ACRBP [836-855] [524-543] 14 3822 IHYFTGTPDPSRSIFKPFIF SCRN1 15 5145 QKQSSYVGWWIHFRIVEIVV ADAM29 [291-310] [185-204] 14 3823 VIVSTLEMSCKALMRFIMVT SLCO6A1 15 5146 ERQLNEAVGNVTPLQLLDWL AKAP-3 [442-461] [830-849] 14 3824 QIQVQGHMPPLMIPIFPHDQ SOX-6 15 5147 VPHLQKVFDRYKSYSPYDML ANXA2 [257-276] [222-241] 14 3825 NCTCGATAVAVPSNIQGIRN SPO11 15 5148 KNGRLTNQLQYLQKVVLKDL BRDT [193-212] [24-43] 14 3826 AHRKHTMLQECKERISALNL SYCE1 15 5149 APGHMSDVEWMSIFKPSKMQ CCDC62 [123-142] [525-544] 14 3827 RNGGTSMMVENMAVRPAPHP TAG-1 15 5150 LKEFEKTIHFYQKKIILHEK CTAGE2 [1002-1021] [408-427] 14 3828 VIYSPGEFYCHVLKEDALKK TDRD1 15 5151 SIYFSSDVVTGNVPLKVGQK CXorf48 [722-741] [56-75] 14 3829 QAPVIQECYQPYYLPGYRYL TEKT5 15 5152 VPVKGSRYAPNARKSRAFIP DBPC [28-47] [166-185] 14 3830 ADPANMFNWTTEEVETCDKG TEX101 15 5153 DAQESSLGLTGLQSLLQGFS DKKL1 [38-57] [37-56] 14 3831 LICREDNAVSAATALLESEE TEX15 15 5154 AISYRKFTSASDVWSFGIVM EPHA2 [541-560] [788-807] 14 3832 EQAQEEITRLRREMMKSCKS TSGA10 15 5155 VESAVWYVKKFGRYLEHLEV FBXO39 [69-88] [75-94] 14 3833 KLKQELKYSNYVRPICLPGT TSP50 15 5156 KRKRKSEMLQKAARGREEHG FMR1NB [211-230] [234-253] 14 3834 LYRNGDFFISSKDLGYDYSY TYR 15 5157 QGLEMRIKLWEEIKSAKYSE FSIP1 [432-451] [142-161] 14 3835 SDNHTTPILCGAQYRIHTHG WT1 15 5158 LENFFRYFLRLSDDKMEHAQ FTHL17 [273-292] [49-68] 15 3836 GLPHIRVFLDNNPWVCDCHM 5T4 15 5159 SKDQQKILAALKELQVEEIQ GASZ [283-302] [320-339] 15 3837 TLYPGFTKRLFRELMGDHVS ACTL8 15 5160 KVKNQLRFLAELAYDLDVDD Glypican- [302-321] 3 [515-534] 15 3838 PRTISLESLAVILAQLLSLS ADAM2 15 5161 SQKRSFVYVWKTWGQYWQVL gp100 [299-318] [144-163] 15 3839 TSSYANRRPCFSSLVVDETY AFP 15 5162 NLLLNYGLYRKMEIYRPHKA HDAC1 [502-521] [40-59]; HDAC2 [41-60] 15 3840 PDGECSIDDLSFYVNRLSSL AKAP-4 15 5163 KKIRESYENDIASMNLQAHL KOC1 [208-227] [345-364] 15 3841 PSSEAAEDVMVAAPLVCSGK CABYR 15 5164 EALFKKSAETLWNIQKDLIF LDHC [210-229] [313-332] 15 3842 FKKIKANYVCLQERYMTEMQ CAGE1 15 5165 KPPYSRLDYTDAKFVDVIHS LIPI [410-429] [213-232] 15 3843 SGTIFDNFLITDDEEYADNF CALR3 15 5166 SFSQDILHDKIIDLVHLLLR MAGE-A11 [309-328] [216-235] 15 3844 FLWQYKSSADKMQQLNAAHQ CDCA1 15 5167 PRKLLTQDLVQENYLEYRQV MAGE-A12 [141-160] [242-261] 15 3845 KGLCTNSCQYQDLLSNCDSL CRISP2 15 5168 GSNPARYEFLWGPRALAETS MAGE-A4 [198-217] [264-283] 15 3846 KWMLGCYDALQKKYLRMVVL CT46 15 5169 VVDEKYKDHFTEILNGASRR MAGE-B1 [80-99] [137-156] 15 3847 AFLSPPTLLEGPLRLSPLLP cTAGE5 15 5170 TKGEMLKIVGKRFREHFPEI MAGE-B2 [533-552] [133-152] 15 3848 RQSLQQCVAISIQQELYSPQ CTCFL 15 5171 KMKKPIMKADMLKIVQKSHK MAGE-B3 [127-146] [127-146] 15 3849 RAARALLSAVTRLLILADMA CTNNA2 15 5172 LKIISKKYKEHFPEIFRKVS MAGE-B4 [125-144] [136-155] 15 3850 ILCALIVFWKYRRFQRNTGE CXorf61 15 5173 LQIPVSRSFSSTLLSIFQSS MAGE-C1 [11-30] [198-217] 15 3851 AVSLDGYFHLWKAENTLSKL DCAF12 15 5174 ASSTLYLVFSPSSFSTSSSL MAGE-C2 [269-288] [42-61] 15 3852 GGSPVKNSLRGLPGPYVPGQ DMRT1 15 5175 ERSQRSQIANITTVWRAQPT MORC1 [249-268] [668-687] 15 3853 RKRKAVTKRARLQRSYEMNE DPPA2 15 5176 QKWREERDQLVAALEIQLKA MPHOSPH1 [148-167] [1516-1535] 15 3854 KDTEITCSERVRTYWIIIEL EpCAM 15 5177 ETQFNQYKTEAASRYNLTIS MUC-1 [129-148] [1118-1137] 15 3855 TQKVTCFYQPAPYFAAEARY FAM46D 15 5178 EKLDAFFGFQLSQEIKQQIH NLAP4 [342-361] [513-532] 15 3856 GHASPHLFTFPPTPPKDVSP GATA-3 15 5179 EQLEERTWLLHDAIQNQQNA PASD1 [144-163] [382-401] 15 3857 KEPMIVYVGTLDLVAVSSVK HAGE 15 5180 RPRRINMTDTGISPMSTRDP SAGE1 [443-462] [226-245] 15 3858 ALFENLRMLPHAPGVQMQAI HDAC2 15 5181 PIPESVIQNYNKALQQLEKY SART3 [366-385]; [276-295] HDAC1 [365-384] 15 3859 DRVMTVSFHKYGNYFFPGTG HDAC3 15 5182 EELKGTEQELIGLLQAREKE SCP-1 [185-204] [458-477] 15 3860 LYQGGQMFDGAPRFHGAVGF IGFS11 15 5183 EGVGVDINKALLAKRKRLEM SCP3a [75-94] [75-94] 15 3861 TRQLCFVVRSKVNIYCSDDG IL13RA2 15 5184 EIEALLGMDLVRLGLERGET SCAN1 [301-320] [103-122] 15 3862 CDVDKLHFTPRIQRLNELEA JARID1B 15 5185 IPPRDKMEDNSALYESTSAH se57-1 [76-95] [10-29] 15 3863 NDGTKIAASQAISAMCENSG KU-CT-1 15 5186 QAFPDMHNSNISKILGSAWK SOX-6 [329-348] [641-660] 15 3864 VADLVGFLLLKYRAREPVTK MAGE-A1 15 5187 PGNVKALLRRATTYKHQNKL SPAG1 [106-125] [273-292] 15 3865 GMLSDVQSMPKTGILILILS MAGE-A10 15 5188 QKVGSLEPRVEVLINRINEV SYCE1 [213-232] [44-63] 15 3866 REDSVFAHPRKLLMQDLVQE MAGE-A2 15 5189 KVLLDAGFAVGEQSMVTDKP TDAD1 [234-253] [665-684] 15 3867 KVLHHMVKISGGPHISYPPL MAGE-A3 15 5190 QAKATQFNSALFTLSSHRQG TEX14 [285-304] [875-894] 15 3868 LHHMVKISGGPRISYPLLHE MAGE-A6 15 5191 SRRVEELSRPKRFYLEYYNN THEG [287-306] [191-210] 15 3869 FLWGPRALAETSYVKVLEHV MAGE-A8 15 5192 KVLKSERDKIFLLYEQAQEE TSGA10 [274-293]; [55-74] MAGE-A4 [272-291] 15 3870 LKVAELVHFLLHKYRVKEPV MAGE-A9 16 5193 LIFLLNFTESRTLHRNEYGI AFP [110-129] [9-28] 15 3871 YDGILHSIYGDARKIITEDL MAGE-B6 16 5194 QVASDMMVSLMKTLKVHSSG AKAP-4 [317-336] [339-358] 15 3872 KMVNVPLEQLPLLFKVVLHS NA6A1 16 5195 VNILTNRSNAQRQDIAFAYQ ANXA2 [453-472] [57-76] 15 3873 TLKIIERNFPELLSLNLCNN NXF2 16 5196 SGKINRHEHYFNQFHRRNEL CALR3 [261-280] [365-384] 15 3874 ACLQRKMNVDVSSTIYNNEV NY-BR-1 16 5197 LQQSLNQDFHQKTIVLQEGN CDCA1 [1173-1192] [190-209] 15 3875 CKPAELSRGRGILIFSDFKD NYD-TSPG 16 5198 PASNMLKMEWSREVTTNAQR CRISP2 [211-230] [54-73] 15 3876 DELERKLEATSAQNIEFLQV ODF2 16 5199 EELERTIHSYQGQIISHEKK cTAGE5 [667-686] [440-459] 15 3877 GPAYSILGRYQTKTMLTPGP ODF3 16 5200 MSLLSIQQQEGVQVVVQQPG CTCFL [84-103] [97-116] 15 3878 RWMAQVLASELSLVAFILLL ODF4 16 5201 QPFEENEFIDASRLVYDGVR CTNNA2 [77-96] [602-621] 15 3879 STYNLLFCGSCGIPVGFHLY OIP5 16 5202 GLINSNTDNNLAVYDLSRDI CXorf61 [130-149] [47-66] 15 3880 CSTPTINIPASPFMQKLGFG PBK 16 5203 LHKRKRLPPVKRSLVYYLKN DCAF12 [22-41] [33-52] 15 3881 VTGQPSQDNCIFVVNEQTVA PEPP2 16 5204 TLSSHLQIDKMTDNKTGEVL DKKL1 [88-107] [99-118] 15 3882 AWNSCNEYMPSRIIVYRDGV PIWIL1 16 5205 DSKSLRTALQKEITTRYQLD EpCAM [685-704] [158-177] 15 3883 IAGPIGMRMSPPAWVELKDD PIWIL2 16 5206 GDQDNWLRTNWVYRGEAERI EPHA2 [628-647] [75-94] 15 3884 KMSTYLKTISPNNFTLAFIV PIWIL3 16 5207 FIKRNIELAKESRNPVVMVD FSIP1 [741-760] [254-273] 15 3885 ADCLKVFMTGALNKWYKYNH PIWIL4 16 5208 IQNAAVFQEAFEIVVRHAKN Glypican- [663-682] 3 [105-124] 15 3886 ELFPPLFMAAFDGRHSQTLK PRAME 16 5209 QVSLKVSNDGPTLIGANASF gp100 [51-70] [65-84] 15 3887 VIMDWEECSKMFPKLTKNML PASS55 16 5210 SDEYIKFLASIRPDNMSEYS HDAC2 [215-234] [70-89] 15 3888 FKYHLTVAQVRGGMVFELAN PSMA 16 5211 RDYTLRTFGEMADAFKSDYF JARID1B [570-589] [375-394] 15 3889 APECLLTDGFYTYKMDLWSA RAGE-1 16 5212 TSLGLTYDGMLSDVQSMPKT MAGE-A10 [169-188] [205-224] 15 3890 GRCWIYNKTKMAFLLVGICF SLCO6A1 16 5213 LEHVVRVNARVRIAYPSLRE MAGE-A4 [655-674] [288-307] 15 3891 QRKRFTAVEMARVLMERNQY SPAG9 16 5214 KASDSLQLVFGIELMEVDPI MAGE-A6 [499-518] [153-172] 15 3892 DADPHGIEIMCIYKYGSMSM SPO11 16 5215 QENYLEYRQAPGSDPVRYEF MAGE-A8 [277-296] [255-274] 15 3893 CSEEYLERQLQAEFIESGQY TAF7L 16 5216 DGEEHLIYGEPRKFITQDLV MAGE-B1 [362-381] [231-250] 15 3894 PGLSYRWLLNEFPNFIPTDG TAG-1 16 5217 GEPWKLITKDLVQEKYLEYK MAGE-B2 [162-181] [242-261] 15 3895 LECAANEVNCPLQVALECLY TEKT5 16 5218 KVDSTKDSYVLVSKMDLPNN MAGE-B3 [176-195] [170-189] 15 3896 VREACPHQLLTQPRKTENGA TEX101 16 5219 AETSKMKVLEFLAKVNDTTP MAGE-B4 [205-224] [278-297] 15 3897 KREKNSYYVFLKYKRQVNEC TEX15 16 5220 DDSTATESASSSVMSPSFSS MAGE-C1 [1774-1793] [1122-1141] 15 3898 GLFGVFLVLLDVTLILADLI TPTE 16 5221 YTLDEKVAELVEFLLLKYEA MAGE-C2 [95-114] [139-158] 15 3899 LQVSSYQHWIWDCLNGQALA TSP50 16 5222 EQEKEEIASKSALLRQIKEV MPHOSPH1 [344-363] [207-226] 15 3900 CGVGRAAQALVCASAKEGTA TSPY1 16 5223 DSLVERLHRQTAEYSAFKLE 0DF2 [20-39] [488-507] 15 3901 DINIYDLFVWMHYYVSMDAL TYR 16 5224 EHGDSSAYENVKFIVNVRDI PASD1 [169-188] [118-137] 15 3902 FKDCERRFSRSDQLKAHQRA WT1 16 5225 MDEAKILKSLHHPNIVGYRA PBK [357-376] [83-102] 15 3903 ALSRLRELCCQWLKPEIHTK ZNF165 16 5226 IPTSPSHGSIAAYQGYSPQR PEPP2 [66-85] [541-560] 16 3904 WVCDCHMADMVTWLKETEVV 5T4 16 5227 HDIVNRQKSIAGFVASTNAE PIWIL3 [296-315] [657-676] 16 3905 QYPNYCSFKSQQCLMRNRNR ACRBP 16 5228 ARLVDNIQRNTNARFELETW PIWIL4 [483-502] [415-434] 16 3906 SGLLTGVVVDSGYGLTRVQP ACTL8 16 5229 SISISALQSLLQHLIGLSNL PRAME [140-159] [417-436] 16 3907 TTGEANELLHTFLRWKTSYL ADAM2 16 5230 PYEEALLQAEAPRLAEYQAY SART3 [239-258] [297-316] 16 3908 KHLPVFTYTDQGAILEDQPF ADAM29 16 5231 EVEKAKVIADEAVKLQKEID SCP-1 [76-95] [681-700] 16 3909 AEDLIVSALLLIQYHLAQGG AKAP-3 16 5232 SGKPSVEDQFTRAYDFETED SCP3a [524-543] [12-31] 16 3910 YCVQDTTSANTTLVHQTTPS BRDT 16 5233 LKIKLQASREAGAAALANVA se57-1 [708-727] [112-131] 16 3911 QLPEQIVIPFTDQVACLKEN CABYR 16 5234 MITQLISLREQLLAAHDEQK SOX-6 [311-330] [194-213] 16 3912 KSVSQYLEMDKTLSKKEEEV CAGE1 16 5235 GQGENKMKNLPVPVYLRPLD SPAG9 [433-452] [660-679] 16 3913 QSDLQFLNFNVENSQELIQM CCDC62 16 5236 QGHTSSEYDMLREMFSDSRS TAF7L [293-312] [311-330] 16 3914 SVSCITYLRGIFPECAYGTR CT46 16 5237 PGNISWTFSSSSLSIKWDPV TAG-1 [37-56] [916-935] 16 3915 SLYPPTLLEGPLRLSPLLPR CTAGE2 16 5238 PQAKEMFIDTVISSYNIETA TEX15 [503-522] [389-408] 16 3916 FCGDYGMIDESIYFSSDVVT CXorf48 16 5239 TERDVAFTDLARMTTERDSL TSGA10 [46-65] [103-122] 16 3917 EAAAGATAVPAATVPATAAG DBPC 16 5240 TPIEWYPDYEVEAYRRRHHN TSPY1 [5-24] [233-252] 16 3918 CEPASEPSSFTVTPVIEEDE DMRT1 17 5241 EDVRVSGWLQTEFLSFQDGD ACRBP [354-373] [452-471] 16 3919 ARAVQPKALNSCSIPVSVEA DPPA2 17 5242 SNTYQLPDGSRVELTPMQRV ACTL8 [194-213] [235-254] 16 3920 PGNEEFQVVKDAVLDCLLDF FAM46D 17 5243 LFGLEIWTNKNLIVVDDVRK ADAM29 [92-111] [245-264] 16 3921 LLSCLSKSNNRLKSLSIQYL FBXO39 17 5244 KWVESIFLIFLLNFTESRTL AFP [115-134] [2-21] 16 3922 RRKAKGRNRRSHRAMRVAHL FMR1NB 17 5245 LGNGSSVDEVSFYANRLTNL AKAP-3 [5-24] [115-134] 16 3923 GDPQLCHFLESHYLHEQVKT FTHL17 17 5246 SSGKPIPASVVLKRVLLRHT AKAP-4 [126-145] [356-375] 16 3924 EISGDEFLNFLLKLNKQCGH GASZ 17 5247 KIRSEFKAKYGKSLYYYIQQ ANXA2 [350-369] [302-321] 16 3925 ANGDPVCNACGLYYKLHNIN GATA-3 17 5248 PDSQQQYNVVKTVKVTEQLR BRDT [333-352] [255-274] 16 3926 TLCYLMPGFIHLVLQPSLKG HAGE 17 5249 AQLEENAKYSSVYMEAEATA CABYR [293-312] [366-385] 16 3927 CWTYETSLLVEEAISEELPY HDAC3 17 5250 KMKNTDYLTQYDLSEFENIG CALR3 [306-325] [279-298] 16 3928 SESPGSIQVARGQPAVLPCT IGFS11 17 5251 ARNETLSNTLVELSAQVGQL CCDC62 [26-45] [133-152] 16 3929 ESSCEIKLKWSIPLGPIPAR IL13RA2 17 5252 SEQDELMADISKRIQSLEDE cTAGE5 [249-268] [160-179] 16 3930 TEEIPLKILAHNNFVGRLIG KOC1 17 5253 EHQLGNNTLSSHLQIDKMTD DKKL1 [274-293] [92-111] 16 3931 PDVKKNSMECIYNLVQDFQC KU-CT-1 17 5254 QQLGLSTNGKKIEVYLRLHR DPPA2 [164-183] [105-124] 16 3932 NSQCKITIVGTGAVGMACAI LDHC 17 5255 HKAREKPYDSKSLRTALQKE EpCAM [18-37] [150-169] 16 3933 KLQEVKILAQFYNDFVNISS LIPI 17 5256 EQQKKIESYLHNHFIGEGMT FAM46D [401-420] [275-294] 16 3934 LESVIKNYKHCFPEIFGKAS MAGE-A1 17 5257 GPLSVYPPASSSSLSGGHAS GATA-3 [129-148] [128-147] 16 3935 WVQEKYLVYRQVPGTDPACY MAGE-A11 17 5258 SLIYRRRLMKQDFSVPQLPH gp100 [363-382] [613-632] 16 3936 IGHLYILVTCLGLSYDGLLG MAGE-A12 17 5259 QLSTGGSVASAVKLNKQQTD HDAC1 [172-191] [111-130] 16 3937 ISHLYILVTCLGLSYDGLLG MAGE-A2 17 5260 HNLLLNYGLYRKMEIYRPHK HDAC2 [172-191] [40-59] 16 3938 LGDNQIMPKAGLLIIVLAII MAGE-A3 17 5261 IREDDTTLVTATVENETYTL IL13RA2 [190-209] [276-295] 16 3939 GTDVKEVDPAGHSYILVTAL MAGE-A9 17 5262 QEGPSTFPDLETSFQVALSR MAGE-A12 [162-181] [92-111] 16 3940 CATEEEVWEFLGLLGIYDGI MAGE-B6 17 5263 EEGPRMFPDLESEFQAAISR MAGE-A2 [301-320] [92-111] 16 3941 AGALEDFPARWSFRAYTSVL MORC1 17 5264 VGNWQYFFPVIFSKASSSLQ MAGE-A3 [225-244] [140-159] 16 3942 KNYGQLDIFPARDTYHPMSE MUC-1 17 5265 EEGVEAQEEALGLVGAQAPT MAGE-A4 [1189-1208] [13-32] 16 3943 TPQTQHQLKALCSLAAEGMW NLRP4 17 5266 PAHLESLFREALDEKVAELV MAGE-A8 [389-408] [101-120 16 3944 MCLPEIRYIAGKMVNVPLEQ NA6A1 17 5267 YKMREPIMKADMLKVVDEKY MAGE-B1 [442-461] [123-142] 16 3945 RNWFKVTIPYGIKYDKAWLM NXF2 17 5268 KSGSLVQFLLYKYKIKKSVT MAGE-B2 [122-141] [114-133] 16 3946 IQDAQKRTALHWACVNGHEE NY-BR-1 17 5269 VDVSYKKSYKGANSKIEKKQ MAGE-B3 [12-31] [75-94] 16 3947 KPLTIYVYQEGLVRFATEKF NYD-TSPG 17 5270 SASQKAIIFKRLSKDAVKKK MAGE-B6 [266-285] [179-198] 16 3948 TWRPHRPRGPIMALYSSPGP ODF3 17 5271 STFEGFAQSSLQIPVSPSFS MAGE-C1 [9-28] [258-277] 16 3949 RSCSDLENGKVTFIFSTLML ODF4 17 5272 KLREILLYFFPEHQLPSELE MORC1 [142-161] [824-843] 16 3950 GHFCLSSDKMVCYLLKTKAI OIP5 17 5273 QQHVPFRESKLTHYFQSFFN MPHOSPH1 [160-179] [426-445] 16 3951 KMGGELWRVDIPLKLVMIVG PIWIL1 17 5274 QLKVLIAENTMLTSKLKEKQ NY-BR-1 [611-630] [1111-1130] 16 3952 DSLKLCLVGSLKKFYEVNHC PIWIL2 17 5275 ITPPSSEKLVSVMRLSDLST ODF2 [786-805] [91-110] 16 3953 SLVNYNLWIEKVTQLEGRPF PRSS55 17 5276 SMEWDTQVVKGSSPLGPAGL OIP5 [287-306] [36-55] 16 3954 LHETDSAVATARRPRWLCAG PSMA 17 5277 GPPDPQAFQGPAAYQPDQMR PASD1 [5-24] [735-754] 16 3955 PQCLSLLHAMVAYDPDERIA RAGE-1 17 5278 GTGVNVYLMKRSPRGLSHSP PBK [256-275] [41-60] 16 3956 PAPGNILSTAPPWLRHMAAA SAGE1 17 5279 DVMHLSQSPSVSQLSVLSLS PRAME [639-658] [338-357] 16 3957 WGAEMGANEHGVCIANEAIN SCRN1 17 5280 IGEGTFSEVMKMQSLRDGNY RAGE-1 [77-96] [10-29] 16 3958 FLFAAVVAWCTLIPLSCFPN SLCO6A1 17 5281 RKQDNVLSNVLSGLINMAGA SAGE1 [318-337] [451-470] 16 3959 YPSLWGFGTTKTFKIPIEHL SPAG1 17 5282 TEKENKMKDLTFLLEESRDK SCP-1 [6-25] [276-295] 16 3960 TVVDNIINDISCMLKVSRRS SPO11 17 5283 EYSQQFLTLFQQWDLDMQKA SCP3a [148-167] [124-143] 16 3961 LKGERPGAAHQAGPDVLIGQ SYCE1 17 5284 VAFPPRAKDGLVVFGKNSAR SCRN1 [312-331] [11-30] 16 3962 QPITSSHLALPFQIIRCSLE TDRD1 17 5285 IQDIITSLARNEAPAFTIDN SPO11 [1039-1058] [55-74] 16 3963 EKCMGMRKTFPCTPRLVGHT TEKT5 17 5286 GQDTSSQKIEDLMEMVQKLQ SYCE1 [466-485] [25-44] 16 3964 IGCRLMSGILAVGPMFVREA TEX101 17 5287 DRGSETTYESSADIAGDEGT TAF7L [189-208] [36-55] 16 3965 PLPTQLYNWAAPEVILQKAA TEX14 17 5288 LMELNGSSSQLIIMLLKNFM TDRD1 [414-433] [1060-1079] 16 3966 LCWPSVYWTERFLEDTTLTI THEG 17 5289 SNAAIQIASATMPALSLNND TEX15 [166-185] [598-617] 16 3967 NLPPRRILFIKHFIIYSIPR TPTE 17 5290 NEGYDRRPLASMSLPPPKAS THEG [407-426] [349-368] 16 3968 DQMTQTASDVPVLQVIMHSR TSP50 17 5291 SSGRQSFYRNPIKEVVRFLD TPTE [172-191] [253-272] 16 3969 NLLSPASFFSSWQIVCSRLE TYR 17 5292 ELVRHHNMHQRNMTKLQLAL WT1 [261-280] [430-449] 16 3970 KRPFMCAYPGCNKRYFKLSH WT1 17 5293 SQSSNLSQHQRIHMRENLLM ZNF165 [320-339] [466-485] 16 3971 GTCDQSFKWNSDFINHQIIY ZNF165 18 5294 PWPERLSNNVEELLQSSLSL ACRBP [295-314] [167-186] 17 3972 TGNQLAVLPAGAFARRPPLA 5T4 18 5295 LAKDLIVSALKLIQYHLTQQ AKAP-4 [99-118] [540-559] 17 3973 GSDTTVVAQKVFQLIGLTNA ADAM2 18 5296 LEKDIISDTSGDFRKLMVAL ANXA2 [195-214] [155-174] 17 3974 RQFETVCKFHWVEAFDDEMT CAGE1 18 5297 DKSKLWLLKDRDLARQKEQE BRDT [119-138] [900-919] 17 3975 SEKTKRLNELKLSVVSLKEI CDCA1 18 5298 KVSSIHSDQSDVLMVDVATS CABYR [217-236] [182-201] 17 3976 SDPTSWSSAIQSWYDEILDF CRISP2 18 5299 QERTNSELHNLRQIYVKQQS CCDC62 [102-121] [275-294] 17 3977 FEGEPMYLNVGEVSTPFHIF CT46 18 5300 AQLQRTPMSALVFPNKISTE CT46 [203-222] [4-23] 17 3978 PGPPRAPFAMRNVYLPRGFL CTAGE2 18 5301 ELYQENEMKLHRKLTVEENY cTAGE5 [710-729] [387-406] 17 3979 KTFRTVTLLRNHVNTHTGTR CTCFL 18 5302 GPLKNTSDVINAAKKIAEAG CTNNA2 [292-311] [733-752] 17 3980 AGAIRGRAARVIHIINAEME CTNNA2 18 5303 RLFLKGNLLRGIDSLFSAPM DKKL1 [540-559] [57-76] 17 3981 PSAPGSRTPGNPATAVSGTP DBPC 18 5304 VRTYWIIIELKHKAREKPYD EpCAM [58-77] [139-158] 17 3982 NVCLAYGSEWSVYAVGSQAH DCAF12 18 5305 VLPDGQVIWVNNTIINGSQV gp100 [299-318] [96-115] 17 3983 SFYQPSLFPYYNNLYNCPQY DMRT1 18 5306 PARRAKRMRAEAMNIKIEPE JARID1B [212-231] [227-246] 17 3984 MELQAARACFALLWGCALAA EPHA2 18 5307 LENFTLKVAYIPDEMAAQQN KOC1 [1-20] [144-163] 17 3985 RILLQEIPIRSISLRSCYFS FBXO39 18 5308 AAEADGIDPLINLLSSKRDG KU-CT-1 [300-319] [394-413] 17 3986 SLEEDSALEALLNFFFPTTC FMR1NB 18 5309 WKNIHKQVIQSAYEIIKLKG LDHC [115-134] [227-246] 17 3987 AENMKCLQFSKDVIISDTKD FSIP1 18 5310 VKNTRKVAVSLSVHIKNLLK LIPI [501-520] [147-166] 17 3988 AINSHITLELYTSYLYLSMA FTHL17 18 5311 KVLEYVIKVSARVRFFFPSL MAGE-A1 [20-39] [278-297] 17 3989 LLDSGISVDSNFQYGWTPLM GASZ 18 5312 ASEEEIWEELGVMGVYDGRE MAGE-A4 [65-84] [217-236] 17 3990 RTACLVVAMLLSLDFPGQAQ Glypican- 18 5313 VGNWQYFFPVIFSKASDSLQ MAGE-A6 3 [140-159] [6-25] 17 3991 VHDVTHVYNFDFPRNIEEYV HAGE 18 5314 VNPNGHTYTFIDKVDLTDEE MAGE-B2 [553-572] [171-190] 17 3992 NNKICDIAINWAGGLHHAKK HDAC3 18 5315 EFLNKMRIYDGKKHFIFGEP MAGE-B3 [119-138] [225-244] 17 3993 NIGLIAGAIGTGAVIIIFCI IGFS11 18 5316 GEPRKLITQDLVQEKYLEYQ MAGE-B4 [239-258] [239-258] 17 3994 CAVNTFLTENSPYSLLEVLC JARID1B 18 5317 RTSQHLVVAFGVELKEMDSS MAGE-B6 [1072-1091] [239-258] 17 3995 LIPGLNLNALGLFPPTSGMP KOC1 18 5318 LDEKVDELARFLLLKYQVKQ MAGE-C1 [364-383] [908-927] 17 3996 PEEEVVIHEFASLCLANMSA KU-CT-1 18 5319 AFTKLNNASSRSHSIFTVKI MPHOSPH1 [119-138] [340-359] 17 3997 YSPDCKILVVSNPVDILTYI LDHC 18 5320 PSPGSTLSSSRSVELNGFMA NR6A1 [127-146] [190-209] 17 3998 NKRPCLEFSQLSVKDSFRDL LIPI 18 5321 YLKGELLRRTKRDIVDSLSA NXF2 [38-57] [454-473] 17 3999 PVTKAEMLESVIKNYKHCFP MAGE-A1 18 5322 IDIHFLERKMQHHLLKEKNE NY-BR-1 [122-141] [1296-1315] 17 4000 SDPARYEFLWGPRAHAEIRK MAGE-A10 18 5323 EKSEEYAEQLHVQLADKDLY ODF2 [289-308] [414-433] 17 4001 LVHLLLRKYRVKGLITKAEM MAGE-A11 18 5324 QPDQMRSAEQTRLMPAEQRD PASD1 [229-248] [749-768] 17 4002 MPKTGFLIIILAIIAKEGDC MAGE-A6 18 5325 SNSIKRNPNAPVVRRGWLYK PEPP2 [196-215] [159-178] 17 4003 GLSCDSMLGDGHSMPKAALL MAGE-A9 18 5326 QETAQLVGSTASQQPGYIQP PIWIL1 [182-201] [16-35] 17 4004 RNGLLMPLLSVIFLNGNCAR MAGE-B4 18 5327 MSGRARVKARGIARSPSATE PIWIL4 [197-216] [1-20] 17 4005 VTEAEMLMIVIKYKDYFPVI MAGE-C2 18 5328 RRLWGSIQSRYISMSVWTSP PRAME [162-181] [4-23] 17 4006 SPGSGSSTTQGQDVTLAPAT MUC-1 18 5329 RPFYRHVIYAPSSHNKYAGE PSMA [65-84] [684-703] 17 4007 EYISEMLLRNKSVRYLDLSA NLRP4 18 5330 GSMKVKRQFVEFTIKEAARF SAGE1 [797-816] [854-873] 17 4008 RKQRNRCQYCRLLKCLQMGM NR6A1 18 5331 QENRKIIEAQRKAIQELQFG SCP-1 [106-125] [135-154] 17 4009 NLCNNKLYQLDGLSDITEKA NXF2 18 5332 MFRQQQKILQQSRIVQSQRL SCP3a [276-295] [153-172] 17 4010 QFIPLTFVMPNDYTKFVAEY NYD-TSPG 18 5333 PLKNVRKKRFRKTQKKVPDV TAF7L [176-195] [225-244] 17 4011 MTEEVWMGTWRPHRPRGPIM ODF3 18 5334 KLVENSLSISNPGLFTSLGP TDRD1 [1-20] [144-163] 17 4012 IFSTLMLFPINIWIFELERN ODF4 18 5335 GEYFYSSTAQENLALETSSP TEX14 [155-174] [1088-1107] 17 4013 KKERPISMINEASNYNVTSD PEPP2 18 5336 LKKAHRRVHTSLQLITKVGE TEX15 [114-133] [1004-1023] 17 4014 PLISVKPLDNWLLIYTRRNY PIWIL1 18 5337 RKRRRRRRLMELAEPKINWQ THEG [486-505] [120-139] 17 4015 ERINLKNTSFITSQELNWVK PIWIL2 18 5338 TTDKILIDVFDGLPLYDDVK TPTE [571-590] [458-477] 17 4016 PGIIRVPAPCHYAHKLAYLV PIWIL3 18 5339 FWSWVGQANDIGLLKLKQEL TSP50 [844-863] [197-216] 17 4017 NDNSEAQLAHLIPELCFLTG PIWIL4 18 5340 ASPLTGIADASQSSMHNALH TYR [365-384] [348-367] 17 4018 EPGEKWYQVGIISWGKSCGE PRSS55 18 5341 ENSRSMPKLEIFEKIESQRI ZNF165 [259-278] [188-207] 17 4019 GAKGVILYSDPADYFAPGVK PSMA 19 5342 GFTKRLFRELMGDHVSSTKA ACTL8 [221-240] [306-325] 17 4020 LSSVGLHMTKGLALWEAYRE SART3 19 5343 QITEEQLEAVIADFSGLLEK AFP [214-233] [562-581] 17 4021 ENKLLQLKSSATYGKSCQDL se57-1 19 5344 AQDKAESYSLISMKGMGDPK AKAP-3 [213-232] [397-416] 17 4022 LVAIFIAFYGDRKKVIWFVA SLCO6A1 19 5345 LSGEAAEAVHSGTSVKSSSG CABYR [157-176] [451-470] 17 4023 VAEARVYRDARGRASSEPHI SOX-6 19 5346 PVQEDMALNEVLQKLKHTNR CAGE1 [602-621] [298-317] 17 4024 ADGNVKAFYRRALAHKGLKN SPAG1 19 5347 TILSPKQIKTPFQKILRDKD CT46 [687-706] [239-258] 17 4025 DSTLRLYHAHTYQHLQDVDI SPAG9 19 5348 VAEAKMTFKRFQANEERLEI CTAGE2 [1109-1128] [157-176] 17 4026 TATRRKPHLLLVAAVALVSS TAG-1 19 5349 AAPIHDADAQESSLGLTGLQ DKKL1 [3-22] [30-49] 17 4027 NSWRPSLFYKIANVQTCPDE TEKT5 19 5350 ASGALVGAASGSSAGGSSRG DMRT1 [48-67] [34-53] 17 4028 KTENGATCLPIPVWGLQLLL TEX101 19 5351 TRNDWRVASELINILERANQ HAGE [219-238] [592-611] 17 4029 GQPSLCSFEINEIYSGCLIL TEX14 19 5352 LPEIQELYQTLLAKPSPAQQ JARID1B [619-638] [1360-1379] 17 4030 SCKSPKSTTAHAILRRVETE TSGA10 19 5353 SDLESIFKDAKIPVSGPFLV KOC1 [85-104] [16-35] 17 4031 KVDPYRSCGFSYEQDPTLRD TSP50 19 5354 SSKRDGAIANAATVLTNMAM KU-CT-1 [97-116] [408-427] 17 4032 FSDHNFAGSNKIAEILCKDL TSPY1 19 5355 DLQHGSLFFSTSKITSGKDY LDHC [261-280] [64-83] 17 4033 VGAVLTALLAGLVSLLCRHK TYR 19 5356 DMNVIVVDWSRGATTFIYNR LIPI [484-503] [126-145] 18 4034 LALIGAIFLLVLYLNRKGIK 5T4 19 5357 WVQENYLEYRQVPGSNPARY MAGE-A4 [363-382] [251-270] 18 4035 ISLRPLLVSHVMACGGNTLY ACTL8 19 5358 SVMGLYDGREHSVYWKLRKL MAGE-A8 [285-304] [229-248] 18 4036 IFCVLIAIMVKVNFQRKKWR ADAM2 19 5359 NLSNDWDFPRNGLLMPLLGV MAGE-B1 [698-717] [188-207] 18 4037 FGGQKHIIHIKVKKLLFSKH ADAM29 19 5360 RGQTQDHQGAQITATNKKKV MAGE-B3 [58-77] [19-83] 18 4038 QHACAVMKNFGTRTFQAITV AFP 19 5361 RTHSTFEGFPQSLLQIPMTS MAGE-C1 [221-240] [325-344] 18 4039 EVVSDLIDSFLRNLHSVTGT AKAP-3 19 5362 KQEFLNVQEYNHLLKVMGQY MORC1 [328-347] [414-433] 18 4040 KLDKYHSLNEELDFLVTSYE CAGE1 19 5363 VQQIQSNYDIAIAELHVQKS MPHOSPH1 [690-709] [933-952] 18 4041 CGFDIKKVHVILHFKNKYHE CALR3 19 5364 TMNKRYNVSQQALDLQNLRF NXF2 [137-156] [220-239] 18 4042 PFSNLVTHLDSFLPICRVND CDCA1 19 5365 YWRTSSFRMTEHNSVKPWQQ NYD-TSPG [84-103] [124-143] 18 4043 RAAVAGFFAVLFLWRSFRSV CTAGE2 19 5366 NRSLGQRQNSPLPFQWRITH ODF4 [17-36] [55-74] 18 4044 CCQCSYASRDTYKLKAHMRT CTCFL 19 5367 RSWTYGITRGGRVFFINEEA PEPP2 [372-391] [14-33] 18 4045 WCPPPFFYRRRFVRGPRPPN DBPC 19 5368 KVLRSETVLDFMFNFYHQTE PIWIL1 [223-242] [272-291] 18 4046 GTLNKVFASQWLNHRQVVCG DCAF12 19 5369 FKRANMDNDIALLLLASPIK PRSS55 [87-106] [148-167] 18 4047 PQGRAGGFGKASGALVGAAS DMRT1 19 5370 RLQDFDKSNPIVLRMENDQL PSMA [24-43] [649-668] 18 4048 ALNSCSIPVSVEAFLMQASG DPPA2 19 5371 KMENVQPAPDNVLLTLRPRR SAGE1 [201-220] [210-229] 18 4049 LEPHMNYTFTVEARNGVSGL EPHA2 19 5372 AATEAPKMSNADFAKLFLRK SART3 [402-421] [944-963] 18 4050 EIRFTNLTWDQVITLDQVLD FAM46D 19 5373 GGSGAVMSERVSGLAGSIYR SPAG9 [3-22] [14-33] 18 4051 EVKFMNPYNAVLTKKFQVTM FBXO39 19 5374 NEVKALLRSDAEAVSTRWEV TAF7L [93-112] [263-282] 18 4052 FKCFAPFRDVPKQMMQMFGL FMR1NB 19 5375 NESVAPYTPFEVKIRSYNAR TAG-1 [171-190] [775-794] 18 4053 SEECEASKGYYLTKALTGHN FSIP1 19 5376 FQAENTIMLLERSIMAKEGP TEKT5 [473-492] [368-387] 18 4054 SHYLHEQVKTIKELGGYVSN FTHL17 19 5377 AYDPKHFHNRVVRIMIDDHN TPTE [136-155] [289-308] 18 4055 ANASFEKDKQSILITACSAH GASZ 19 5378 LVERREEAQRAQQAVPGPGP TSPY1 [103-122] [83-102] 18 4056 PTHHGSQVCRPPLLHGSLPW GATA-3 19 5379 AQYRIHTHGVFRGIQDVARV WT1 [77-96] [284-303] 18 4057 PDATCHQVRSFFQRLQPGLK Glypican- 20 5380 GRRDARSFVEAAGTTNFPAN AKAP-3 3 [543-562] [31-50] 18 4058 QSQAWPIVLQGIDLIGVAQT HAGE 20 5381 SKIASEMAYEAVELTAAEMR AKAP-4 [269-288] [268-287] 18 4059 HSDDYIKFLRSIRPDNMSEY HDAC1 20 5382 MKGKGTRDKVLIRIMVSRSE ANXA2 [68-87] [278-297] 18 4060 YGQGHPMKPHRIRMTHNLLL HDAC2 20 5383 SATEKVFKQQEIPSVFPKTS BRDT [25-44] [166-185] 18 4061 LHHAKKFEASGFCYVNDIVI HDAC3 20 5384 IKIGSEKSLHLEVEITSIVS CABYR [133-152] [409-428] 18 4062 TFTTSAALINLNVIWMVTPL IGFS11 20 5385 ERPEIVSTWSSAGISWRSEA CAGE1 [45-64] [260-279] 18 4063 GFILILVIFVTGLLLRKPNT IL13RA2 20 5386 HKEKDKGLQTTQNGRFYAIS CALR3 [349-368] [59-78] 18 4064 VQFLLFKYQMKEPITKAEIL MAGE-A10 20 5387 NQKSLFKDQKFEAMLVQQNR CCDC62 [142-161] [348-367] 18 4065 FREASVCMQLLFGIDVKEVD MAGE-A11 20 5388 KTRSGKVFQNKMANGNQPVK CT46 [264-283] [333-352] 18 4066 LETSFQVALSRKMAELVHFL MAGE-A12 20 5389 IEEKSKLLEKFSLVQKEYEG cTAGE5 [101-120] [86-105] 18 4067 VIFSKASEYLQLVFGIEVVE MAGE-A2 20 5390 GSSRGGGSGSGASDLGAGSK DMrT1 [149-168] [49-68] 18 4068 MPKAGLLIIVLAIIAREGDC MAGE-A3 20 5391 NSYNVRRTEGFSVTLDDLAP EPHA2 [196-215] [480-499] 18 4069 GHSYILVTCLGLSYDGLLGD MAGE-A8 20 5392 RPSRVHASEVESAVWYVKKF FBXO39 [176-195] [66-85] 18 4070 SMPKAALLIIVLGVILTKDN MAGE-A9 20 5393 QLAEIDIKLQELSAASPTIS FSIP1 [194-213] [319-338] 18 4071 DPPRYQFLWGPRAYAETTKM MAGE-B1 20 5394 GSHHTASPWNLSPFSKTSIH GATA-3 [264-283] [104-123] 18 4072 WEVLNAVGVYAGREHFVYGE MAGE-C2 20 5395 FVNLKNITYLVLDEADKMLD HAGE [250-269] [384-403] 18 4073 AMGIPFIIQCDLCLKWRVLP MORC1 20 5396 GSVAGAVKLNRQQTDMAVNW HDAC2 [477-496] [117-136] 18 4074 TLVHNGTSARATTTPASKST MUC-1 20 5397 TESVSHFSDLGQSFSFHSGN IGFS11 [971-990] [332-351] 18 4075 QEANFHIIDNVDLVVSAYCL NLAP4 20 5398 TVEYELKYRNIGSETWKTII IL13RA2 [574-593] [66-85] 18 4076 LKPWLLEVNYSPALTLDCST NYD-TSPG 20 5399 HSVPKRQRIRKLQIRNIPPH KOC1 [380-399] [72-91] 18 4077 TPGPAAYRQTDVRVTKFKAP ODF3 20 5400 FHPGGLMKLASREADLYRFI KU-CT-1 [179-198] [853-872] 18 4078 SELSLVAFILLLVVAFSKKW ODF4 20 5401 RAHAETSKMKVLEYIANANG MAGE-A11 [85-104] [389-408] 18 4079 GPQLPSWLQPERCAVFQCAQ OIP5 20 5402 EEGPSTFPDLESEFQAALSR MAGE-A6 [63-82] [92-111] 18 4080 HHPNIVGYRAFTEANDGSLC PBK 20 5403 QIKEPVTKAEMLESVIKNYK MAGE-A8 [93-112] [128-147] 18 4081 PNVECKSMRFGMLKDHQAVT PIWIL2 20 5404 KEPVTKAEMLESVIKNYKRY MAGE-A9 [249-268] [126-145] 18 4082 LQLWDLKFDTNFLSVPGRVL PIWIL3 20 5405 DGEEHSVFGEPWKLITKDLV MAGE-B2 [453-472] [234-253] 18 4083 MLLFSVLLLLSLVTGTQLGP PRSS55 20 5406 STSTERSLKDSLTRKTKMLV MAGE-B4 [1-20] [98-117] 18 4084 GDFGSCRSVYSKQPYTEYIS RAGE-1 20 5407 QATIDTADDATVMASESLSV MAGE-C2 [144-163] [345-364] 18 4085 VYDYNCHVDLIALLRLEGEL SART3 20 5408 LDVQIQHVVEGKRALSELTQ MPHOSPH1 [109-128] [1135-1154] 18 4086 MAAAPPSYCFVAFPPRAKDG SCRN1 20 5409 ESLDQKLFQLQSKNMWLQQQ NY-BR-1 [1-20] [1261-1280] 18 4087 SCQDLQREISILQEQISHLQ se57-1 20 5410 HKAEVEAIMEQLKELKQKGD ODF2 [228-247] [377-396] 18 4088 NPVLICLALSKATEYLVIIG SLCO6A1 20 5411 TKYVFDSAPSHSISARTKAF ODF3 [382-401] [112-131] 18 4089 RRQEMRQFFTVGQQPQIPIT SOX-6 20 5412 SVHLAWDLSRSLGAVVFSRV OIP5 [717-736] [90-109] 18 4090 VDYKTVLQIDCGLQLANDSV SPAG1 20 5413 NDLIEERYKASQDPFPAAII PBK [542-561] [124-143] 18 4091 LKDSILSIVHVKGIVLVALA SPAG9 20 5414 RGTTEIGMIGSKPFSTVKYK PEPP2 [999-1018] [779-798] 18 4092 HILSTSKGLIAGNLRYIEED SPO11 20 5415 KRVNTRFFAQSGGRLQNPLP PIWIL1 [169-188] [742-761] 18 4093 VLWSKGTEILVNSSRVTVTP TAG-1 20 5416 KTPKDSFTMSDGKEITFLEY PIWIL2 [450-469] [436-455] 18 4094 LPTLRSALFSRYSPHDWDQS TEKT5 20 5417 PSVSQLSVLSLSGVMLTDVS PRAME [78-97] [346-365] 18 4095 HCPTCVALGTCFSAPSLPCP TEX101 20 5418 YSEELFPEELSVVLGTNDLT PRSS55 [139-158] [111-130] 18 4096 TEALIVCEQDVSRMRRQLDE TSGA10 20 5419 KFSGYPLYHSVYETYELVEK PSMA [316-335] [545-564] 18 4097 MRPEGSLTYAVPERLRQGFC TSPY1 20 5420 RLNPHPNILMLHEVVFDRKS RAGE-1 [1-20] [56-75] 18 4098 PPPPSQASSGQARMFPNAPY WT1 20 5421 ELTKVRMARQKMSEIFPLTE SART3 [114-133] [127-146] 19 4099 VPTDLPAYVRNLFLTGNQLA 5T4 20 5422 ELEDIKVSLQRSVSTQKALE SCP-1 [85-104] [323-342] 19 4100 IYDENSYWRNQNPGSLLQLP ACRBP 20 5423 TGEGEFNFSEVFSPVEDHLD SCRN1 [301-320] [215-234] 19 4101 IPRATIIYANISGHLCIAVE ADAM2 20 5424 SILQEQISHLQFVIHSQHQN se57-1 [557-576] [237-256] 19 4102 NCSYGDFWEYTVERTKCLLE ADAM29 20 5425 QQQEQIARQQQQLLQQQHKI SOX-6 [368-387] [232-251] 19 4103 FNQWKQNATDIMEAMLKRLV AKAP-4 20 5426 IIEAKMELEEVTRLLNLKDK SPAG1 [412-431] [724-743] 19 4104 HLETVILGLLKTPAQYDASE ANXA2 20 5427 SSSLSIKWDPVVPFRNESAV TAG-1 [94-113] [925-944] 19 4105 EKMDNQEYKDAYKFAADVRL BRDT 20 5428 QAIIQGFSYDLLKKIDSPQR TEX14 [324-343] [152-171] 19 4106 YHENKKLIRCKVDGFTHLYT CALR3 20 5429 HVSDHNRLLHLARPKAQSDK THEG [154-173] [293-312] 19 4107 MVAVHQQQLLSWEEDRQKVL CCDC62 20 5430 TVEKEMKSLARKAMDTESEL TSGA10 [47-66] [174-193] 19 4108 EKMKDTVQKLKNARQEVVEK CDCA1 20 5431 SAKEGTAFRMEAVQEGAAGV TSPY1 [256-275] [33-52] 19 4109 RGPLFPVDARGPFLRRGPPF cTAGE5 [700-719]

Example 19—Process for Personalized Vaccination

Process for personalized vaccination consists of 3 main steps as shown in FIG. 17. First, during the visit at the oncologist the patient provides saliva sample and tumor sample (biopsy) for tumor pathology. Second step is the matching of vaccine peptides with the patient's unique genetic code: Based on the determined HLA genotype of the patient and determined tumor type of the patient, 12 tumor and patient specific peptides are selected for the patient from the Hotspot Sequences listed in Table-25. Then, the vaccine will be prepared and after fill&finish plus QC release, and vaccine vials shipped to the clinical site. At the clinic, as third step of the process, vaccine is administered to the patient by the oncologist. The manufacturing of the personalized vaccine is carried out under GMP conditions. Vaccine selection and preparation can be performed during 6-8 weeks.

Eligibility criteria for personalized vaccination are:

-   -   ≥12 immunogenic peptides (12 PEPIs) from     -   ≥12 different cancer-specific antigens (expression rate (ER) in         the disease ≥10%) and     -   AGP ≥3 (expected number of antigens expressed in the patient's         tumor)     -   On stock in the PEPI PANEL “Warehouse”

Example 20—Feasibility Study for a “Simulated” Breast Cancer Clinical Trial

We describe here a model, where the peptide set (“warehouse”) consists of 100 immunogenic peptides derived from breast cancer specific TSAs (FIG. 18). These 100 peptides represent the peptide set for vaccine selection in this example. In this stock, there are available 100 mg of each peptide, that represents 25 peptide dose (for vaccination).

During the feasibility study, we screened 509 HLA-genotyped breast cancer subjects and identified 82 patients (16%) who were not eligible because less, than 12 peptides were found for those patients. This means, that 82% of patients could be treated with “patient-specific” vaccine from a panel consisting of 100 peptides. However, the amount (100 mg each) will only be enough for 32% of the patients if we intend to administer 3 doses/patient during the treatment, therefore 267 (52%), who will have not sufficient peptides in warehouse must be also excluded from this feasibility study. Consequently, 160 patients can be enrolled and treated by the administration of 3 consecutive vaccine doses. Manufacturing (GMP) can be performed within cca. 6 months.

Example 21—Vaccine Selection for a Breast Cancer Patient (Patient-C of Example 22) and for a Colorectal Cancer Patient (Patient-D of Example 22)

The vaccine selection process from peptides listed in Table 25 is demonstrated here by two examples.

Patient-C's PIT vaccine described in Example 22 were designed during a completely personalized design process and manufactured individually, and demonstrated very high immunogenicity: 11 out of 12 (92%) vaccine peptides induced CD8+ T cell responses and 11/12 (92%) were resulted in CD4+ T cell specific immune responses.

By taking the HLA genotype and tumor pathology report (breast cancer) of Patient-C, patient matching process according to Example 16 resulted in 116 of 3286 sequences, selected from 38 breast cancer specific TSAs (according to selection criteria of, Expression rate (ER) ≥10%). These 116 peptides are usable for vaccine selection for Patient-C and contain the PIT vaccine sequences. Three examples for random selection of 12 peptides from the 116 peptides are shown in Table 25 with expected AGP numbers.

PIT vaccine of Patient-C has an expected AGP value of 6.45, meaning that at least 6 vaccine-specific TSAs are likely expressed in the patient's tumor and are targeted by immune responses with at least 50% of probability. (AGP95 is 4, meaning that PIT vaccine peptides from at least 4 different TSAs are likely expressed in the patient's tumor and are targeted by immune responses in Patient-C with at least 95% probability.)

TABLE 29 Vaccine selection for Patient-C from the PEPI PANEL. Original vaccine means the PIT vaccine designed during in a completely personalized design process for Patient-C (Example 22). The peptide set matched with Patient-C breast cancer indication resulted in 116 of 3286 Sequences selected from 38 of 58 Breast cancer specific TSAs). These 116 peptides are usable for vaccine selection for Patient-C. Three examples for random selection of 12 peptides from the 116 peptides are shown in this table with calculated expected AGP numbers. Calculated expected Vaccines SEQ ID NOS (AG[ER %] from Table 25) AGP CI95% PIT vaccine 5449 (SPAG9[88%]), 5432 (AKAP-4[85%]), 5433 (CTCFL[74%]), 6.45 [3, 9] of Patient-C 5440 (MAGE-A11[59%]), 41 (FMR1NB[55%]), 5437 (FSIP1[42%]), 5444 (NY-BR-1[47%]), 5439 (LDHC[35%]), 5438 (GATA-3[31%]), 440 (Survivin[68%]), 5443 (MAGE-C1[16%]), 111 (PRAME[49%]) Random1 2 (ACRBP[40%]), 7 (AKAP-3[40%]), 18 (CDCA1[64%]), 40 4.91 [2, 8] (FBXO39[38%]), 41 (FMR1NB[55%]), 42 (FSIP1[42%]), 57 (JARID1B[76%]), 60 (Lage-1[12%]), 66 (MAGE-A11[59%]), 68 (MAGE-A2[12%]), 74 (MAGE-A9[44%]), 80 (MAGE-C1[16%]) Random2 107 (PIWIL2[94%]), 167 (AKAP-4[85%]), 183 (CTCFL[74%]), 192 7.96 [5.11] (EpCAM[76%]), 215 (JARID1B[76%]), 405 (ODF4[63%]), 440 (Survivin[68%]), 663 (MAGE-A11[59%]), 1539 (MAGE-A9[44%]), 857 (TDRD1[38%]), 1326 (PEPP2[60%]), 1441 (ODF4[63%]) Random3 18 (CDCA1[64%]), 107 (PIWIL2[94%]), 215 (JARID1B[76%]), 5.92 [3, 9] 297 (TDRD1[38%]), 391 (MAGE-C1[16%]), 470 (AKAP-4[85%]), 490 (DKKL1[20%]), 498 (FBXO39[38%]), 1088 (PRAME[49%]), 1100 (SP17[47%]), 1800 (TSGA10[70%])

For Patient-D, a similar analysis was performed. During the patient matching process according to Example 19, 136 of 3286 sequences were selected from Table 25. (derived from 37 of 53 CRC specific TSAs), based on the HLA genotype and tumor pathology report (colorectal cancer, CRC) data of Patient-D. These 136 peptides are usable for vaccine selection for Patient-D. Three examples for random selection of 13 peptides from the 136 peptides are shown in Table 30, with calculated AGP numbers. Patient-D had a PIT vaccine consisting of 13 peptides, therefore the random selection was also performed to result in 13 peptide sets.

Patient-D's PIT vaccine described in Example 22 were designed during a completely personalized design process and manufactured individually, and demonstrated very high immunogenicity: 13 out of 13 (100%) vaccine peptides induced CD8+ T cell responses and 7/13 (54%) were resulted in CD4+ T cell specific immune responses.

PIT vaccine of Patient-D has an expected AGP value of 6.60, meaning that at least 6 vaccine-specific TSAs are likely expressed in the patient's tumor and are targeted by immune responses with at least 50% of probability. (AGP95 is 4, meaning that PIT vaccine peptides from at least 4 different TSAs are likely expressed in the patient's tumor and are targeted by immune responses in Patient-D with at least 95% probability.)

TABLE 30 Vaccine selection for Patient-D from the PEPI PANEL. Original vaccine means the PIT vaccine designed during in a completely personalized design process for Patient-D (Example 22). The peptide set matched with Patient-D CRC indication resulted in 136 of 3286 Sequences selected from 37 of 53 CRC specific TSAs). These 136 peptides are usable for vaccine selection for Patient-D and contain the PIT vaccine sequences. Three examples for random selection of 13 peptides from the 116 peptides are shown in this table with calculated AGP numbers. Calculated expected Vaccines SEQ ID NOS (AG[ER %] from Table 25) AGP CI95% PIT vaccine 5450 (TSP50[89%]), 5436 (EpCAM[88%]), 5434 (CAGE1[74%]), 6.60 [4, 10] of Patient-D 5447 (PIWIL1[48%]), 5448 (SPAG9[71%]), 2168 (AKAP-4 [74%]), 5442 (MAGE-A8[44%]), 5435 (DPPA2[44%]), 40 (FBXO39[39%]), 5445 (NYD-TSPG[30%]), 5446 (PAGE4[33%]), 647 (HAGE[15%]), 1172 (Lage-1[13%]) 5.30 [2, 8] Random1 315 (5T4[85%]), 347 (DPPA2[44%]), 353 (FBXO39[39%]), 371 (Lage-1[13%]), 383 (MAGE-A6[22%]), 384 (MAGE-A8[44%]), 412 (PIWIL2[80%]), 470 (AKAP-4[74%]), 486 (CXorf48[17%]), 639 (FBXO39[39%]), 647 (HAGE[15%]), 652 (IGFS11[55%]), 6.91 [4, 10] 657 (Lage-1[13%]) Random2 1157 (FBXO39[39%]), 1160 (GASZ[22%]), 1172 (Lage-1[13%]), 1183 (MAGE-A6[22%]), 1211 (PIWIL3[96%]), 1249 (5T4[85%]), 1256 (AKAP-4[74%]), 1262 (CCDC62[13%]), 1270 5.32 [3, 8] (DBPC[90%]), 1274 (EpCAM[88%]), 1300 (MAGE-A3[22%]), 1365 (ZNF165[43%]), 1372 (AKAP-3[83%]) Random3 470 (AKAP-4[74%]), 486 (CXorf48[17%]), 639 (FBXO39[39%]), 647 (HAGE[15%]), 652 (IGFS11[55%]), 657 (Lage-1[13%]), 658 (LDHC[15%]), 686 (NYD-TSPG[30%]), 696 (PIWIL3[96%]), 713 (SPAG1[55%]), 796 (MAGE-A1[14%]), 830 (PIWIL3[96%]), 929 (MAGE-A2[18%])

Example 22—Personalised Immunotherapy (PIT) Design and Treatment for Ovarian-, Breast- and Colorectal Cancer

This Example provides proof of concept data from 4 metastatic cancer patients treated with personalized immunotherapy vaccine compositions to support the principals of binding of epitopes by multiple HLAs of a subject to induce cytotoxic T cell responses, on which the present disclosure is partly based on.

Composition for Treatment of Ovarian Cancer with POC01-PIT (Patient-A)

This example describes the treatment of an ovarian cancer patient with a personalised immunotherapy composition, wherein the composition was specifically designed for the patient based on her HLA genotype based on the disclosure described herein.

The HLA class I and class II genotype of a metastatic ovarian adenocarcinoma cancer patient (Patient-A) was determined from a saliva sample.

To make a personalized pharmaceutical composition for Patient-A thirteen peptides were selected, each of which met the following two criteria: (i) derived from an antigen that is expressed in ovarian cancers, as reported in peer reviewed scientific publications; and (ii) comprises a fragment that is a T cell epitope capable of binding to at least three HLA class I of Patient-A (Table 31). In addition, each peptide is optimized to bind the maximum number of HLA class II of the patient.

TABLE 31 Personalized vaccine of ovarian cancer Patient-A. POC01 Anti- vaccine Tar- gen MAX MAX for get Ex- SEQ HLA HLA Patient- Anti- pres- ID class class A gen sion 20mer peptides NO: I II POC01_ AKAP4 89% NSLQKQLQAVLQWIA 5933 3 5 P1 ASQFN POC01_ BORIS 82% SGDERSDEIVLTVSN 5934 4 2 P2 SNVEE POC01_ SPAG9 76% VQKEDGRVQAFGWSL 5935 3 3 P3 PQKYK POC01_ OY- 75% EVESTPMIMENIQEL 5936 3 4 P4 TES-1 IRSAQ POC01_ SP17 69% AYFESLLEKREKTNF 5937 3 1 P5 DPAEW POC01_ WT1 63% PSQASSGQARMFPNA 5938 4 1 P6 PYLPS POC01_ HIWI 63% RRSIAGFVASINEGM 5939 3 4 P7 TRWFS POC01_ PRAME 60% MQDIKMILKMVQLDS 5940 3 4 P8 IEDLE POC01_ AKAP- 58% ANSVVSDMMVSIMKT 5941 3 4 P9 3 LKIQV POC01_ MAGE- 37% REALSNKVDELAHFL 5942 3 2 P10 A4 LRKYR POC01_ MAGE- 37% ETSYEKVINYLVMLN 5943 3 4 P11 A9 AREPI POC01_ MAGE- 52% DVKEVDPTGHSFVLV 5944 3 4 P12a A10 TSLGL POC01_ BAGE 30% SAQLLQARLMKEESP 5945 3 2 P12b VVSWR

Eleven PEPI3 peptides in this immunotherapy composition can induce T cell responses in Patient-A with 84% probability and the two PEPI4 peptides (POC01-P2 and POC01-P5) with 98% probability, according to the validation of the PEPI test shown in Table 7. T cell responses target 13 antigens expressed in ovarian cancers. Expression of these cancer antigens in Patient-A was not tested. Instead the probability of successful killing of cancer cells was determined based on the probability of antigen expression in the patient's cancer cells and the positive predictive value of the ≥1 PEPI3+ test (AGP count). AGP count predicts the effectiveness of a vaccine in a subject: Number of vaccine antigens expressed in the patient's tumor (ovarian adenocarcinoma) with PEPI. The AGP count indicates the number of tumor antigens that the vaccine recognizes and induces a T cell response against the patient's tumor (hit the target). The AGP count depends on the vaccine-antigen expression rate in the subject's tumor and the HLA genotype of the subject. The correct value is between 0 (no PEPI presented by any expressed antigen) and maximum number of antigens (all antigens are expressed and present a PEPI).

The probability that Patient-A will express one or more of the 13 antigens is shown in FIGS. 19A-B. AGP95 (AGP with 95% probability)=5, AGP50 (the mean-expected value-of the discrete probability distribution)=7.9, mAGP (probability that AGP is at least 2)=100%, AP=13.

A pharmaceutical composition for Patient-A may be comprised of at least 2 from the 13 peptides (Table 31), because the presence in a vaccine or immunotherapy composition of at least two polypeptide fragments (epitopes) that can bind to at least three HLAs of an individual (≥2 PEPI3+) was determined to be predictive for a clinical response. The peptides are synthetized, dissolved in a pharmaceutically acceptable solvent and mixed with an adjuvant prior to injection. It is desirable for the patient to receive personalized immunotherapy with at least two peptide vaccines, but preferable more to increase the probability of killing cancer cells and decrease the chance of relapse.

For treatment of Patient-A, the 13 peptides were formulated as 4×3 or 4 peptide (P0001/1, P0001/2, P0001/3, P0001/4). One treatment cycle is defined as administration of all 13 peptides within 30 days.

Patient History:

Diagnosis: Metastatic ovarian adenocarcinoma

Age: 51

Family anamnesis: colon and ovary cancer (mother) breast cancer (grandmother)

Tumor Pathology:

2011: first diagnosis of ovarian adenocarcinoma; Wertheim operation and chemotherapy; lymph node removal 2015: metastasis in pericardial adipose tissue, excised 2016: hepatic metastases 2017: retroperitoneal and mesenteric lymph nodes have progressed; incipient peritoneal carcinosis with small accompanying ascites

Prior Therapy: 2012: Paclitaxel-carboplatin (6×) 2014: Caelyx-carboplatin (lx)

2016-2017 (9 months): Lymparza (Olaparib) 2×400 mg/day, oral 2017: Hycamtin inf. 5×2.5 mg (3× one seria/month)

PIT vaccine treatment began on 21 Apr. 2017. FIG. 20.

2017-2018: Patient-A received 8 cycles of vaccination as add-on therapy, and lived 17 months (528 days) after start of the treatment. During this interval, after the 3^(rd) and 4^(th) vaccine treatment she experienced partial response as best response. She died in October 2018.

An interferon (IFN)-γ ELISPOT bioassay confirmed the predicted T cell responses of Patient-A to the 13 peptides. Positive T cell responses (defined as >5 fold above control, or >3 fold above control and >50 spots) were detected for all 13 20-mer peptides and all 13 9-mer peptides having the sequence of the PEPI of each peptide capable of binding to the maximum HLA class I alleles of Patient-A (FIG. 21).

Patient' tumor MRI findings (Baseline Apr. 15, 2016) (BL: baseline for tumor response evaluation on FIG. 22) Disease was confined primarily to liver and lymph nodes. The use of MRI limits detection of lung (pulmonary) metastasis May 2016-January 2017: Olaparib treatment (FU1: follow up 1 on FIG. 22) Dec. 25, 2016 (before PIT vaccine treatment) There was dramatic reduction in tumor burden with confirmation of response obtained at (FU2: follow up 2 on FIG. 22) January-March 2017—TOPO protocol (topoisomerase) Apr. 6, 2017 (FU3 on FIG. 22) demonstrated regrowth of existing lesions and appearance of new lesions leading to disease progression. Peritoneal carcinomatosis with increased amount of ascites. Progressive hepatic tumor and lymph node

Apr. 21, 2017 Start Pit

Jul. 26, 2017 (after the 2^(nd) Cycle of PIT): (FU4 on FIG. 22) Progression/Pseudo-Progression

-   -   Rapid progression in lymph nodes, hepatic, retroperitoneal and         thoracic areas, significant pleural fluid and ascites. Initiate         Carboplatin, Gemcitabine, Avastin.         Sep. 20, 2017 (after 3 Cycles of PIT): (FU5 on FIG. 22) Partial         Response     -   Complete remission in the pleural region/fluid and ascites     -   Remission in hepatic, retroperitoneal area and lymph nodes     -   The findings suggest pseudo progression.         Nov. 28, 2017 (after 4 Cycles of PIT): (FU6 on FIG. 22) Partial         Response     -   Complete remission in the thoracic region. Remission in hepatic,         retroperitoneal area and lymph nodes

Apr. 13, 2018: Progression

-   -   Complete remission in the thoracic and retroperitoneal regions.         Progression in hepatic centers and lymph nodes         Jun. 12, 2018: Stable disease     -   Complete remission in the thoracic and retroperitoneal regions.         Minimal regression in hepatic centers and lymph nodes

July 2018: Progression

October 2018: Patient-A died Partial MRI data for Patient-A is shown in Table 32 and FIG. 22.

TABLE 32 Summary Table of Lesions Responses Baseline FU1 FU2 FU3 FU4 FU5 FU6 Lesion/ (% Δ (% Δ (% Δ (% Δ (% Δ (% Δ (% Δ Best PD Time from from from from from from from Response Time Point BL) BL) BL) BL) BL) BL) BL) Cycle Point TL1 NA −56.1 −44.4 −44.8 +109.3 −47.8 −67.3 FU6 FU4 TL2 NA −100.0 −100.0 −47.1 −13.1 −100.0 −100.0 FU1 FU3 TL3 NA −59.4 −62.3 −62.0 −30.9 −66.7 −75.9 FU6 FU4 TL4 NA −65.8 −100.0 −100.0 −100.0 −100.0 −100.0 FU2 NA SUM NA −66.3 −76.0 −68.9 −23.5 −78.2 −85.2 FU6 FU4

Design, Safety and Immunogenicity of Personalised Immunotherapy Composition PBRC01 for Treatment of Metastatic Breast Cancer (Patient-B)

The HLA class I and class II genotype of metastatic breast cancer Patient-B was determined from a saliva sample. To make a personalized pharmaceutical composition for Patient-B twelve peptides were selected, each of which met the following two criteria: (i) derived from an antigen that is expressed in breast cancers, as reported in peer reviewed scientific publications; and (ii) comprises a fragment that is a T cell epitope capable of binding to at least three HLA class I of Patient-B (Table 33). In addition, each peptide is optimized to bind the maximum number of HLA class II of the patient. The twelve peptides target twelve breast cancer antigens. The probability that Patient-B will express one or more of the 12 antigens is shown in FIGS. 23A-C.

TABLE 33 12 peptides for Patient-B breast cancer patient Anti- Tar- gen MAXHL MAXHL BRC01 get Ex- SEQ  A A vaccine Anti- pres- ID Class Class peptides gen sion 20mer peptide NO: I II PBRC01_ FSIP1 49% ISDTKDYFMSKTL 5946 3 6 cP1 GIGRLKR PBRC01_ SPAG9 88% FDRNTESLFEELS 5947 3 2 cP2 SAGSGLI PBRC01_ AKAP4 85% SQKMDMSNIVLML 5948 3 6 cP3 IQKLLNE PBRC01_ BORIS 71% SAVFHERYALIQH 5949 3 6 cP4 QKTHKNE PBRC01_ MAGE- 59% DVKEVDPTSHSYV 5950 3 4 cP5 A11 LVTSLNL PBRC01_ NY- 49% ENAHGQSLEEDSA 5951 3 2 cP6 SAR- LEALLNF 35 PBRC01_ HOM- 47% MASFRKLTLSEKV 5952 3 5 cP7 TES- PPNHPSR 85 PBRC01_ NY- 47% KRASQYSGQLKVL 5953 3 6 cP8 BR-1 IAENTML PBRC01_ MAGE- 44% VDPAQLEFMFQEA 5954 3 8 cP9 A9 LKLKVAE PBRC01_ SCP- 38% EYEREETRQVYMD 5955 3 3 cP10 1 LNNNIEK PBRC01_ MAGE- 37% PEIFGKASESLQL 5956 3 3 cP11 A1 VFGIDVK PBRC01_ MAGE- 21% DSESSFTYTLDEK 5957 4 2 cP12 C2 VAELVEF

Predicted Efficacy:

AGP95=4; 95% likelihood that the PIT Vaccine induces CTL responses against 4 TSAs expressed in the breast cancer cells of Patient-B. Additional efficacy parameters: AGP50=6.45, mAGP=100%, AP=12.

For treatment of Patient-B the 12 peptides were formulated as 4×3 peptide (PBR01/1, PBR01/2, PBR01/3, PBR01/4). One treatment cycle is defined as administration of all 12 different peptide vaccines within 30 days (FIG. 23C).

Patient History:

2013: Diagnosis: breast carcinoma diagnosis; CT scan and hone scan ruled out metastatic disease. 2014: bilateral mastectomy, postoperative chemotherapy 2016: extensive metastatic disease with nodal involvement both above and below the diaphragm. Multiple liver and pulmonary metastases.

Therapy: 2013-2014: Adriamycin-Cyclophosphamide and Paclitaxel

2017: Letrozole, Palbociclib and Gosorelin and PIT vaccine 2018: Worsening conditions, patient died in January

PIT vaccine treatment began on 7 Apr. 2017. treatment schedule of Patient-B and main characteristics of disease are shown in Table 34.

TABLE 34 Treatment and response of Patient-B Date (2017) March May June September November December PIT Vaccine Palbocyclib Treatment Letrozole regimen Gosorelin Anticancer drug treatment interruption Neutrophils ND 1.1 4.5 3.4 2.4 3 (1.7-3.5/mm³) CEA 99 65 23 32 128 430 (<5.0 ng/ml) CA 15-3 322 333 138 76 272 230 (<31.3 U/ml) T1: Right 15 mm & 9 mm & nd* nd nd 6 mm & 0 axillar 11.6 2.0 SUV_(max) lymph node SUV_(max) SUV_(max) T2: Right lung 10 mm & 7 mm & 0 nd  nd nd 4 mm & 0 metastasis 4.8 SUV_(max) SUV_(max) SUV_(max) Left iliac Non Regression nd  nd nd Regression bone measurable & 0 & metastasis & 4.0 SUV_(max) 0 SUV_(max) SUV_(max) Multiple liver Non Partial nd  nd nd Progression metastases measurable regression & 16.8 & 11.5 & 6.1 SUV_(max) SUV_(max) SUV_(max) *no data

It was predicted with 95% confidence that 8-12 vaccine peptides would induce T cell responses in Patient-B. Peptide-specific T cell responses were measured in all available PBMC samples using an interferon (IFN)-γ ELISPOT bioassay (FIG. 24). The results confirmed the prediction: Nine peptides reacted positive demonstrating that T cells can recognize Patient-B's tumor cells expressing FISP1, BORIS, MAGE-A11, HOM-TES-85, NY-BR-1, MAGE-A9, SCP1, MAGE-A1 and MAGE-C2 antigens. Some tumor specific T cells were present after the 1^(St) vaccination and boosted with additional treatments (e.g. MAGE-A1) others induced after boosting (e.g. MAGE-A9). Such broad tumor specific T cell responses are remarkable in a late stage cancer patient.

Patient-B History and Results

Mar. 7, 2017: Prior PIT Vaccine treatment Hepatic multi-metastatic disease with truly extrinsic compression of the origin of the choledochal duct and massive dilatation of the entire intrahepatic biliary tract. Celiac, hepatic hilar and retroperitoneal adenopathy March 2017: Treatment initiation—Letrozole, Palbociclib, Gosorelin & PIT Vaccine May 2017: Drug interruption May 26, 2017: After 1 cycle of PIT 83% reduction of tumor metabolic activity (PET CT) liver, lung lymphnodes and other metastases. June 2017: Normalized Neutrophils values indicate Palbociclib interruption as affirmed by the patient

4 Months Delayed Rebound of Tumor Markers

March to May 2017: CEA and CA remained elevated consistently with the outcome of her anti-cancer treatment (Ban, Future Oncol 2018) June to September 2017: CEA and CA decreased consistently with the delayed responses to immunotherapies

Quality of Life

February to March 2017: Poor, hospitalized with jaundice

April to October 2017: Excellent

November 2017: Worsening conditions (tumor escape?) January 2018: Patient-B died. Immunogenicity results are summarized in FIG. 24.

Clinical outcome measurements of the patient: One month prior to the initiation of PIT vaccine treatment PET CT documented extensive DFG avid disease with nodal involvement both above and below the diaphragm (Table 34). She had progressive multiple hepatic, multifocal osseous and pulmonary metastases and retroperitoneal adenopathy. Her intrahepatic enzymes were elevated consistent with the damage caused by her liver metastases with elevated bilirubin and jaundice. She accepted Letrozole, Palbociclib and Gosorelin as anti-cancer treatment. Two month after initiation of PIT vaccinations the patient felt very well and her quality of life normalized. In fact, her PET CT showed a significant morphometabolic regression in the liver, lung, bone and lymph node metastases. No metabolic adenopathy was identifiable at the supra-diaphragmatic stage.

The combination of Palblocyclib and the personalised vaccine was likely to have been responsible for the remarkable early response observed following administration of the vaccine. Palbocyclib has been shown to improve the activity of immunotherapies by increasing TSA presentation by HLAs and decreasing the proliferation of Tregs (Goel et al. Nature. 2017:471-475). The results of Patient-B treatment suggest that PIT vaccine may be used as add-on to the state-of-art therapy to obtain maximal efficacy.

Patient-B's tumor biomarkers were followed to disentangle the effects of state-of-art therapy from those of PIT vaccine. Tumor markers were unchanged during the initial 2-3 months of treatment then sharply dropped suggesting of a delayed effect, typical of immunotherapies (Table 34). Moreover, at the time the tumor biomarkers dropped the patient had already voluntarily interrupted treatment and confirmed by the increase in neutrophil counts.

After the 5^(th) PIT treatment the patient experienced symptoms. The levels of tumor markers and liver enzymes were increased again. 33 days after the last PIT vaccination, her PET CT showed significant metabolic progression in the liver, peritoneal, skeletal and left adrenal site confirming the laboratory findings. The discrete relapse in the distant metastases could be due to potential immune resistance; perhaps caused by downregulation of both HLA expression that impairs the recognition of the tumor by PIT induced T cells. However, the PET CT had detected complete regression of the metabolic activity of all axillary and mediastinal axillary supra-diaphragmatic targets (Table 34). These localized tumor responses may be accounted to the known delayed and durable responses to immunotherapy, as it is unlikely that after anti-cancer drug treatment interruption these tumor sites would not relapse.

Personalised Immunotherapy Composition for Treatment of a Patient with Metastatic Breast Carcinoma (Patient-C)

PIT vaccine similar in design to that described for Patient-A and Patient-B was prepared for the treatment of a patient (Patient-C) with metastatic breast carcinoma. PIT vaccine contained 12 PEPIs. The PIT vaccine has a predicted efficacy of AGP=4. The patient's treatment schedule is shown in FIG. 25.

Tumor Pathology

2011 Original tumor: HER2-, ER+, sentinel lymph node negative 2017 Multiple bone metastases: ER+, cytokeratin 7+, cytokeratin 20-,CA125-, TTF1-, CDX2-

Treatments

2011 Wide local resection, sentinel lymph nodes negative; radiotherapy 2017—Anti-cancer therapy (Tx): Letrozole (2.5 mg/day), Denosumab;

-   -   Radiation (Rx): one bone     -   PIT vaccine (3 cycles) as add-on to standard of care

Bioassay confirmed positive T cell responses (defined as >5 fold above control, or >3 fold above control and >50 spots) to 11 out of the 12 20-mer peptides of the PIT vaccine and 11 out of 12 9-mer peptides having the sequence of the PEPI of each peptide capable of binding to the maximum HLA class I alleles of the patient (FIGS. 26A-B). Long-lasting memory T-cell responses were detected after 14 months of the last vaccination (FIGS. 26C-D).

Treatment Outcome

Clinical results of treatment of Patient-C are shown in Table 35. Patient-C has partial response and signs of healing bone metastases.

TABLE 35 Clinical results of treatment of breast cancer Patient-C +70 days* +150 days* +388 days* Before PIT (10 w) (21 w) (55 w) Bone Met. breast Not done RIB5 is Not done Biopsy cancer DCIS negative PET CT Multiple Only RIB5 is Not done Not done metastases DFG avid CT Multiple Not done Not done Healing metastases bone mets (sclerotic foci) CA-15-3 87 50 32 24 *After 3rd cycle of PIT vaccination Immune responses are shown on FIG. 26. Predicted Immunogenicity, PEPI=12 (CI95% [8,12] Detected Immunogenicity: 11 (20-mers) & 11 (9-mers) antigen specific T cell responses following 3 PIT vaccinations (FIG. 26A, B). After 4.5, 11 or 14 months of the last vaccination, PIT vaccine-specific immune response could still be detected (FIG. 26 C, D). Personalised Immunotherapy Composition for Treatment of Patient with Metastatic Colorectal Cancer (Patient-D)

Tumor Pathology

2017 (February) mCRC (MSS) with liver metastases, surgery of primer tumor (in sigmoid colon).

-   -   pT3 pN2b (8/16) M1. KRAS G12D, TP53-C135Y, KDR-Q472H, MET-T1010I         mutations. SATB2 expression. EGFR wt, PIK3CA-I391M (non-driver).         2017 (June) Partial liver resection: KRAS-G12D (35G>A) NRAS wt,         2018 (May) 2^(nd) resection: SATB2 expression, lung metastases         3→21

Treatments

2017 FOLFOX-4 (oxaliplatin, Ca-folinate, 5-FU)→allergic reaction during 2^(nd) treatment

-   -   DeGramont (5-FU+Ca-folinate)         2018 (June)→FOLFIRI plus ramucirumab, biweekly;         chemoembolization         2018 (October) PIT vaccination (13 patient-specific peptides, 4         doses) as add-on to standard of care.         The patient's treatment schedule is shown in FIG. 27.

Treatment Outcome

Patient in good overall condition, disease progression in lungs after 8 months confirmed by CT.

Both PIT induced and pre-existing T cell responses were measured by enriched Fluorospot from PBMC, using 9mer and 20mer peptides for stimulation (FIGS. 28A-B).

Summary of immune response rate and immunogenicity results prove the proper design for target antigen selection as well as for the induction of multi-peptide targeting immune responses, both CD4+ and CD8+ specific ones.

TABLE 36 Summary table of immunological analysis of Patient A-D Measured immunogenicity for the different vaccine peptides* Patient ID CD4+ T cells CD8+ T cells Patient-A 13/13 (100%) 13/13 (100%) Patient-B 9/12 (75%) 1/12 (8%) Patient-C 11/12 (92%) 11/12 (92%) Patient-D 7/13 (54%) 13/13 (100%) IRR (ratio of immune 4/4 4/4 responder patients) Ratio of immunogenic peptides 10/12-13 10/12-13 (median) *Following 1-3 cycles of vaccination 

1. A method of providing immunotherapy to a subject in need thereof, the method comprising: administering to the individual a pharmaceutical composition, comprising i) two or more different peptides consisting of an amino acid sequence selected from the group consisting of SEQ ID Nos: 1 to 2786 and 5432 to 5931 and ii) a pharmaceutically acceptable adjuvant, diluent, carrier, preservative, or a combination thereof, thereby inducing an immune response.
 2. The method of claim 1, further comprising: predicting that the subject will have a CD8+ T cell response and/or a CD4+ T cell response to each peptide of the pharmaceutical composition by, (i) a) determining that each peptide comprises at least one amino acid sequence that is a T cell epitope capable of binding to at least three HLA class I molecules of the subject; and b) predicting that the subject will have a CD8+ T cell response to each peptide of the pharmaceutical composition or each peptide, polynucleic acid or vector of the kit; and (ii) a) determining that each peptide comprises at least one amino acid sequence that is a T cell epitope capable of binding to at least three HLA class II molecules of the subject; and b) predicting that the subject will have a CD4+ T cell response to each peptide of the pharmaceutical composition.
 3. The method of claim 1, wherein the pharmaceutical composition comprises at least 3, at least 4, at least 5, at least 6, at least 7, at least 8, at least 9, at least 10, at least 11, or at least 12 different peptides, wherein each peptide consists of an amino acid sequence selected from the group consisting of SEQ ID Nos: 1 to 2786 and 5432 to
 5931. 4. The method of claim 1, wherein the peptides of the pharmaceutical composition are from different cancer associated antigens selected from Table
 24. 5. The method of claim 1, wherein the adjuvant comprises an aluminium salt, saponin, Lipid A, or a water-in-oil emulsion.
 6. The method according to claim 1, wherein the immunotherapy is a treatment for cancer.
 7. The method of claim 6, wherein the cancer is bladder cancer, brain cancer, breast cancer, colorectal cancer, gastric cancer, hepatocellular cancer, leukemia, lung cancer, lymphoma, melanoma, ovarian cancer, pancreatic cancer, pediatric cancer, thyroid cancer, prostate cancer, kidney cancer, head and neck cancer, esophageal cancer and cervical cancer.
 8. A pharmaceutical composition, comprising (a) at least two peptides consisting of 15 to 50 amino acids in length, wherein each peptide comprises a different sequence and which binds to at least three HLA class II alleles and at least three HLA class I alleles; and (b) an immunological adjuvant.
 9. The pharmaceutical composition of claim 8, wherein the at least two peptides each comprise a different sequence selected from SEQ ID Nos: 1 to 2786 and/or 5432 to
 5931. 10. The pharmaceutical composition of claim 8, comprising at least 3, at least 4, at least 5, at least 6, at least 7, at least 8, at least 9, at least 10, at least 11, or at least 12 different peptides, wherein each peptide comprises an amino acid sequence selected from the group consisting of SEQ ID Nos: 1 to 2786 and 5432 to
 5931. 11. The pharmaceutical composition of claim 8, wherein the peptides are from different cancer associated antigens selected from Table
 24. 12. The pharmaceutical composition of claim 8, wherein the adjuvant comprises an aluminium salt, saponin, Lipid A, or a water-in-oil emulsion.
 13. A method of designing or preparing a peptide, or a polynucleic acid or vector that encodes a peptide, or a panel of peptides, or one or more polynucleic acid or vectors that encode a panel of peptides, for use in a method of inducing a T cell response against a target polypeptide, the method comprising (i) selecting or defining a model human population comprising a plurality of subjects each defined by HLA class I genotype and/or by HLA class II genotype; (ii) identifying for each subject of the model population: (a) amino acid sequences of the target polypeptide that are a T cell epitope capable of binding to at least three HLA class I molecules of the subject; (b) amino acid sequences of the target polypeptide that are a T cell epitope capable of binding to at least three HLA class II molecules of the subject; (c) amino acid sequences of the target polypeptide that comprise a T cell epitope capable of binding to at least three HLA class I molecules of the subject and a T cell epitope capable of binding to at least three HLA class II molecules of the subject; or (d) amino acid sequences of the target polypeptide that both a. are a T cell epitope capable of binding to at least three HLA class II molecules; and b. comprise an amino acid sequence that is a T cell epitope capable of binding to at least three HLA class I molecules of the subject; (iii) selecting a polypeptide fragment window length of between 9 and 50 amino acids; (iv) identifying a fragment of the target polypeptide that (a) has the length selected in step (iii); and (b) comprises an amino acid sequence identified in any one of step (ii) (a) to (c) in the highest proportion of subjects in the model population; and (v) designing or preparing a peptide, a polynucleic acid or vector that encodes a peptide, a panel of peptides, or one or more polynucleic acids or vectors that encode a panel of peptides, wherein each peptide comprises one or more of the target polypeptide fragments identified in step (iv).
 14. The method of claim 13, wherein the polypeptide fragment is flanked at the N and/or C terminus by additional amino acids that are not part of the sequence of the target polypeptide antigen.
 15. The method of claim 13, further comprising (v) testing the fragment identified in step (iv) against additional pre-defined criteria, rejecting the fragment if the further pre-defined criteria are not met, and repeating step (iv) to identify an alternative fragment of the target polypeptide that has the length selected in step (iii); and comprises an amino acid sequence identified in step (iv) in the next highest proportion of subjects in the model population.
 16. The method of claim 15, further comprising repeating step (iv) and step (v) in one or more further rounds, wherein a further fragment of the target polypeptide is identified in each round, and wherein in each round subjects are excluded from the model population if any of the fragments selected in step (iv) and not rejected in step (v) of any of the preceding rounds comprises an amino acid sequence identified in step (ii) for that subject.
 17. The method according to claim 13, wherein the target polypeptide is expressed by pathogenic organism, a virus or a cancer cell, or is a cancer testes antigen, optionally wherein the target polypeptide is selected from the antigens listed in any of Tables 2 to
 5. 18. The method according to claim 13, further comprising selecting two or more peptides, polynucleic acids or vectors designed or prepared according to the method of claim 9 for use in a method of vaccinating, providing immunotherapy to, or inducing a cytotoxic and/or helper T cell response in a subject, wherein each of the two or more peptides or encoded peptides comprises an amino acid sequence that is (a) a fragment of a polypeptide that is expressed by a pathogenic organism, a virus or a cancer cell; and (b) a T cell epitope capable of binding to at least three HLA class I molecules of the subject or a T cell epitope capable of binding to at least three HLA class II molecules of the subject; and wherein the method further comprises administering the one or more peptides, polynucleic acids or vectors to the subject. 